Wall clock time and date at job start Mon Mar 30 2020 00:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21555 * 120.00518 * 0.02562 * 8 7 6 10 10 C 1.47875 * 119.99411 * 179.97438 * 8 7 6 11 11 N 1.34545 * 126.05093 * 359.69700 * 10 8 7 12 12 C 1.30871 * 107.27161 * 179.88859 * 11 10 8 13 13 N 1.34590 * 107.62150 * 0.36541 * 12 11 10 14 14 H 0.96997 * 125.74785 * 179.80278 * 13 12 11 15 15 N 1.28850 * 108.50472 * 359.76526 * 13 12 11 16 16 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00239 * 84.99640 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 26 26 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 29 29 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 31 31 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 32 32 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 33 33 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 34 34 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 35 35 H 1.07999 * 126.19042 * 180.12453 * 12 11 10 36 36 H 0.97004 * 119.99747 * 265.00379 * 16 4 2 37 37 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0424 -4.7526 1.8257 10 6 2.3954 -4.9159 3.7243 11 7 3.2543 -4.4117 4.6289 12 6 3.5366 -5.3708 5.4733 13 7 2.8593 -6.4674 5.0857 14 1 2.8803 -7.3315 5.5259 15 7 2.1778 -6.1759 4.0318 16 7 3.5050 -0.7207 1.2495 17 6 4.1892 0.3542 1.7510 18 1 3.6488 1.2015 2.1466 19 6 5.5773 0.3549 1.7508 20 7 6.2358 -0.6800 1.2736 21 14 6.5107 1.8210 2.4355 22 1 6.7634 2.7991 1.3470 23 1 5.7051 2.4659 3.5033 24 1 7.8056 1.3635 3.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.4437 -2.1651 1.3387 33 1 1.8184 -2.6510 0.3178 34 1 2.7227 -2.4348 2.9848 35 1 4.1969 -5.2970 6.3247 36 1 3.9903 -1.4819 0.8944 37 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319956204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:33 Heat of formation + Delta-G solvation = 55.880089 kcal Electronic energy + Delta-G solvation = -20482.441921 eV Core-core repulsion = 17296.913791 eV Total energy + Delta-G solvation = -3185.528129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.49393 -39.24287 -37.26454 -34.09989 -33.40890 -33.34986 -31.44093 -30.20161 -28.09480 -26.12676 -24.66525 -23.21878 -22.94978 -21.75963 -20.25000 -19.41852 -18.87925 -17.47349 -16.88452 -16.37502 -15.96442 -15.06749 -14.91283 -14.50920 -14.17777 -13.65825 -13.58769 -13.41914 -12.94749 -12.23950 -12.18693 -11.92867 -11.62150 -11.17270 -10.90395 -10.76663 -10.72952 -10.53799 -10.41318 -10.11547 -10.05271 -9.95476 -9.86591 -9.79230 -9.16071 -8.86770 -8.68038 -7.03364 -6.06439 -3.07558 1.37832 2.11239 2.47402 3.31813 3.53069 3.54025 3.57166 3.70945 4.16077 4.63667 4.67735 4.85844 5.30494 5.35049 5.54897 5.62551 5.76739 5.85377 5.89790 5.97028 6.12473 6.20222 6.20822 6.35201 6.41196 6.51202 6.58453 6.60784 6.64288 6.85752 7.04669 7.30571 7.71598 7.84417 8.04025 8.44093 8.77597 9.22354 10.09256 10.23877 11.40838 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.006254 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.231920 B = 4475.983003 C = 6067.999628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.112 3.888 7 N -0.690 5.690 8 C 0.609 3.391 9 O -0.533 6.533 10 C 0.153 3.847 11 N -0.474 5.474 12 C 0.196 3.804 13 N -0.405 5.405 14 H 0.450 0.550 15 N -0.255 5.255 16 N -0.731 5.731 17 C -0.326 4.326 18 H 0.068 0.932 19 C -0.043 4.043 20 N -0.942 5.942 21 Si 1.078 2.922 22 H -0.297 1.297 23 H -0.295 1.295 24 H -0.290 1.290 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.420 0.580 35 H 0.230 0.770 36 H 0.368 0.632 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 -7.124 7.665 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.065 3.935 5 H 0.074 0.926 6 C -0.012 4.012 7 N -0.342 5.342 8 C 0.390 3.610 9 O -0.407 6.407 10 C -0.128 4.128 11 N -0.200 5.200 12 C -0.102 4.102 13 N -0.128 5.128 14 H 0.297 0.703 15 N -0.094 5.094 16 N -0.374 5.374 17 C -0.456 4.456 18 H 0.086 0.914 19 C -0.241 4.241 20 N -0.587 5.587 21 Si 0.910 3.090 22 H -0.225 1.225 23 H -0.222 1.222 24 H -0.216 1.216 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.258 0.742 35 H 0.246 0.754 36 H 0.201 0.799 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.071 -6.611 7.054 11.978 hybrid contribution -0.839 -1.214 0.444 1.541 sum -7.910 -7.825 7.499 13.418 Atomic orbital electron populations 1.21947 0.96754 1.01004 1.01020 1.21716 0.93620 0.97909 0.99791 1.21809 1.04278 0.94473 0.98971 1.20485 0.85926 0.90819 0.96272 0.92583 1.21872 0.97628 0.93315 0.88363 1.45733 1.47955 1.09711 1.30819 1.16305 0.80927 0.81930 0.81878 1.90795 1.36013 1.68066 1.45844 1.23927 1.00028 0.89307 0.99539 1.71416 1.14274 1.29960 1.04303 1.26669 0.99455 0.82698 1.01384 1.45265 1.32707 1.14584 1.20240 0.70340 1.74340 1.16179 1.16734 1.02190 1.42459 0.99352 1.20957 1.74643 1.19999 0.91547 0.97184 1.36902 0.91432 1.25667 0.93415 1.03690 1.01287 1.70836 1.37427 1.07050 1.43406 0.83249 0.75792 0.74296 0.75667 1.22475 1.22179 1.21572 0.93109 0.93490 0.93013 0.92011 0.89447 0.95020 0.94019 0.91054 0.91582 0.74171 0.75386 0.79863 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.84 37.16 0.33 -1.80 16 2 C -0.11 -1.88 2.69 -90.62 -0.24 -2.12 16 3 C -0.14 -2.53 8.26 37.16 0.31 -2.22 16 4 C 0.18 3.32 2.18 -67.93 -0.15 3.17 16 5 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 6 C 0.11 1.98 4.73 -4.04 -0.02 1.96 16 7 N -0.69 -12.64 5.39 -61.24 -0.33 -12.97 16 8 C 0.61 11.56 7.83 -12.32 -0.10 11.46 16 9 O -0.53 -11.25 17.09 5.32 0.09 -11.16 16 10 C 0.15 2.61 7.96 -156.35 -1.24 1.37 16 11 N -0.47 -7.29 11.09 -12.36 -0.14 -7.43 16 12 C 0.20 1.94 13.14 -90.48 -1.19 0.75 16 13 N -0.41 -3.79 6.93 29.57 0.20 -3.59 16 14 H 0.45 1.95 8.96 -190.21 -1.70 0.24 16 15 N -0.26 -3.80 12.30 32.08 0.39 -3.41 16 16 N -0.73 -16.88 4.44 -53.43 -0.24 -17.12 16 17 C -0.33 -8.42 7.57 -15.06 -0.11 -8.53 16 18 H 0.07 1.74 7.40 -52.48 -0.39 1.35 16 19 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 20 N -0.94 -28.20 13.70 55.49 0.76 -27.44 16 21 Si 1.08 25.26 29.92 -169.99 -5.09 20.18 16 22 H -0.30 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.90 6.01 -51.93 -0.31 1.59 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.16 6.71 -51.92 -0.35 0.81 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.42 8.11 7.85 -40.82 -0.32 7.79 16 35 H 0.23 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.37 9.12 6.63 -40.82 -0.27 8.85 16 37 H 0.26 7.62 6.77 -40.82 -0.28 7.35 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -34.34 312.74 -8.28 -42.61 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.14 Total: 12.86 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.51 Total: 2.75 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: 0.66 Total: -71.95 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.09 Total: 20.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.34 -8.28 -42.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319956204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.493 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds