Wall clock time and date at job start Mon Mar 30 2020 00:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21555 * 120.00518 * 0.02562 * 8 7 6 10 10 C 1.47875 * 119.99411 * 179.97438 * 8 7 6 11 11 N 1.34545 * 126.05093 * 359.69700 * 10 8 7 12 12 C 1.30871 * 107.27161 * 179.88859 * 11 10 8 13 13 N 1.34590 * 107.62150 * 0.36541 * 12 11 10 14 14 H 0.96997 * 125.74785 * 179.80278 * 13 12 11 15 15 N 1.28850 * 108.50472 * 359.76526 * 13 12 11 16 16 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 17 17 C 1.36935 * 120.00239 * 84.99640 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 26 26 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 29 29 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 31 31 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 32 32 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 33 33 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 34 34 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 35 35 H 1.07999 * 126.19042 * 180.12453 * 12 11 10 36 36 H 0.97004 * 119.99747 * 265.00379 * 16 4 2 37 37 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0424 -4.7526 1.8257 10 6 2.3954 -4.9159 3.7243 11 7 3.2543 -4.4117 4.6289 12 6 3.5366 -5.3708 5.4733 13 7 2.8593 -6.4674 5.0857 14 1 2.8803 -7.3315 5.5259 15 7 2.1778 -6.1759 4.0318 16 7 3.5050 -0.7207 1.2495 17 6 4.1892 0.3542 1.7510 18 1 3.6488 1.2015 2.1466 19 6 5.5773 0.3549 1.7508 20 7 6.2358 -0.6800 1.2736 21 14 6.5107 1.8210 2.4355 22 1 6.7634 2.7991 1.3470 23 1 5.7051 2.4659 3.5033 24 1 7.8056 1.3635 3.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.4437 -2.1651 1.3387 33 1 1.8184 -2.6510 0.3178 34 1 2.7227 -2.4348 2.9848 35 1 4.1969 -5.2970 6.3247 36 1 3.9903 -1.4819 0.8944 37 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319956204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:33 Heat of formation + Delta-G solvation = 30.242189 kcal Electronic energy + Delta-G solvation = -20483.553663 eV Core-core repulsion = 17296.913791 eV Total energy + Delta-G solvation = -3186.639872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.49192 -40.72020 -38.84615 -35.56799 -35.19221 -34.47317 -32.49305 -31.96672 -29.67834 -27.48800 -26.16898 -25.00072 -23.88638 -23.22399 -21.63370 -20.79623 -19.95867 -19.35582 -18.23131 -17.45745 -17.34585 -16.61826 -16.36912 -15.84238 -15.73023 -15.43819 -15.05835 -14.93654 -14.41031 -13.66475 -13.52538 -13.21981 -12.87587 -12.78804 -12.66774 -12.47088 -11.97370 -11.86226 -11.80468 -11.61419 -11.56660 -11.48532 -11.42860 -11.13571 -10.84424 -10.78473 -10.15146 -9.01564 -8.22817 -5.17548 0.23232 1.12319 1.52993 1.63908 1.73401 1.86559 2.18763 2.24640 2.78549 3.10027 3.51667 3.56911 3.73964 3.82446 4.01287 4.24310 4.25247 4.37646 4.57728 4.65660 4.84908 4.88577 4.93144 5.00560 5.12104 5.20944 5.23719 5.24946 5.40911 5.59697 5.73217 5.77427 5.92275 6.33930 6.61823 6.88182 7.05807 7.18779 8.08670 8.21686 9.27670 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.006254 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.231920 B = 4475.983003 C = 6067.999628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.133 4.133 4 C 0.178 3.822 5 H 0.055 0.945 6 C 0.120 3.880 7 N -0.689 5.689 8 C 0.606 3.394 9 O -0.563 6.563 10 C 0.121 3.879 11 N -0.517 5.517 12 C 0.220 3.780 13 N -0.380 5.380 14 H 0.473 0.527 15 N -0.272 5.272 16 N -0.739 5.739 17 C -0.301 4.301 18 H 0.071 0.929 19 C -0.105 4.105 20 N -0.980 5.980 21 Si 1.121 2.879 22 H -0.292 1.292 23 H -0.272 1.272 24 H -0.300 1.300 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.285 0.715 36 H 0.357 0.643 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -6.948 9.180 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.190 4.190 4 C 0.069 3.931 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.340 5.340 8 C 0.388 3.612 9 O -0.440 6.440 10 C -0.159 4.159 11 N -0.244 5.244 12 C -0.077 4.077 13 N -0.106 5.106 14 H 0.325 0.675 15 N -0.114 5.114 16 N -0.380 5.380 17 C -0.433 4.433 18 H 0.089 0.911 19 C -0.296 4.296 20 N -0.629 5.629 21 Si 0.949 3.051 22 H -0.219 1.219 23 H -0.198 1.198 24 H -0.227 1.227 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.301 0.699 36 H 0.189 0.811 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.048 -6.444 8.592 13.421 hybrid contribution -0.616 -1.342 0.047 1.478 sum -8.663 -7.787 8.639 14.502 Atomic orbital electron populations 1.21860 0.93691 1.02023 1.02308 1.21609 0.96113 0.96853 0.98080 1.21713 1.01620 0.95385 1.00298 1.20631 0.83543 0.91918 0.97027 0.92690 1.21820 0.98529 0.92144 0.87938 1.45719 1.47760 1.09820 1.30686 1.16606 0.80446 0.81860 0.82243 1.90754 1.37467 1.68591 1.47214 1.23516 1.02001 0.90128 1.00238 1.71356 1.15184 1.32401 1.05467 1.27639 0.98026 0.81133 1.00870 1.45237 1.31026 1.15734 1.18574 0.67526 1.74222 1.17168 1.16013 1.03954 1.42580 1.01097 1.19908 1.74431 1.20228 0.91558 0.97271 1.34213 0.91070 1.26854 0.95075 1.05244 1.02425 1.70951 1.37594 1.07870 1.46473 0.82671 0.74584 0.72109 0.75772 1.21911 1.19769 1.22695 0.92204 0.91837 0.92178 0.93061 0.93339 0.92870 0.93530 0.89171 0.92512 0.74739 0.69942 0.81110 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.84 71.98 0.64 -3.02 16 2 C -0.10 -3.52 2.69 -10.79 -0.03 -3.55 16 3 C -0.13 -4.69 8.26 71.98 0.59 -4.10 16 4 C 0.18 6.66 2.18 44.99 0.10 6.76 16 5 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 6 C 0.12 4.20 4.73 86.38 0.41 4.61 16 7 N -0.69 -25.71 5.39 -465.94 -2.51 -28.22 16 8 C 0.61 23.48 7.83 86.80 0.68 24.16 16 9 O -0.56 -24.28 17.09 -3.89 -0.07 -24.35 16 10 C 0.12 4.12 7.96 137.13 1.09 5.21 16 11 N -0.52 -15.44 11.09 -193.02 -2.14 -17.58 16 12 C 0.22 3.71 13.14 180.30 2.37 6.08 16 13 N -0.38 -6.17 6.93 -60.37 -0.42 -6.59 16 14 H 0.47 2.59 8.96 -219.80 -1.97 0.62 16 15 N -0.27 -7.86 12.30 -52.43 -0.64 -8.51 16 16 N -0.74 -34.64 4.44 -322.95 -1.43 -36.08 16 17 C -0.30 -15.66 7.57 84.03 0.64 -15.03 16 18 H 0.07 3.61 7.40 -2.91 -0.02 3.59 16 19 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 20 N -0.98 -60.23 13.70 21.65 0.30 -59.94 16 21 Si 1.12 51.14 29.92 68.60 2.05 53.19 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.06 1.47 6.55 -2.39 -0.02 1.45 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 2.84 6.71 -2.38 -0.02 2.83 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.42 16.41 7.85 -92.71 -0.73 15.68 16 35 H 0.29 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.36 18.34 6.63 -92.71 -0.61 17.73 16 37 H 0.24 14.99 6.77 -92.71 -0.63 14.36 16 Total: -1.00 -77.07 312.74 0.04 -77.03 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -2.05 Total: 35.29 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.95 Total: 15.74 kcal Atomic # 7 Polarization: -150.06 SS G_CDS: -6.85 Total: -156.91 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.07 Total: -24.35 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -77.07 0.04 -77.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319956204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.275 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds