Wall clock time and date at job start Mon Mar 30 2020 00:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46218 * 2 1 4 4 N 1.46498 * 109.47203 * 119.99591 * 2 1 3 5 5 C 1.34781 * 120.00157 * 275.00727 * 4 2 1 6 6 O 1.21587 * 119.99744 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99826 * 179.97438 * 5 4 2 8 8 C 1.46501 * 119.99672 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47018 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47177 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00193 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99801 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47400 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46645 * 120.00318 * 14 12 10 17 17 H 1.48501 * 109.47302 * 239.99830 * 14 12 10 18 18 C 1.50697 * 109.47357 * 239.99952 * 2 1 3 19 19 N 1.30519 * 126.34476 * 284.99585 * 18 2 1 20 20 N 1.28600 * 109.66808 * 179.73098 * 19 18 2 21 21 C 1.30516 * 109.67696 * 0.44987 * 20 19 18 22 22 N 1.35495 * 107.30468 * 359.55808 * 21 20 19 23 23 C 1.46499 * 126.97946 * 180.26092 * 22 21 20 24 24 H 1.09007 * 109.46681 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47661 * 299.99910 * 1 2 3 26 26 H 1.09006 * 109.47150 * 60.00641 * 1 2 3 27 27 H 0.96999 * 120.00142 * 94.99990 * 4 2 1 28 28 H 0.96999 * 120.00018 * 359.97438 * 7 5 4 29 29 H 1.09007 * 109.46848 * 300.00088 * 8 7 5 30 30 H 1.08998 * 109.47326 * 59.99780 * 8 7 5 31 31 H 1.09007 * 109.46977 * 299.99511 * 9 8 7 32 32 H 1.08998 * 109.47658 * 59.99486 * 9 8 7 33 33 H 0.96999 * 119.99848 * 179.97438 * 13 12 10 34 34 H 1.08002 * 126.35125 * 179.82818 * 21 20 19 35 35 H 1.09004 * 109.47293 * 90.03308 * 23 22 21 36 36 H 1.09007 * 109.47309 * 210.02845 * 23 22 21 37 37 H 1.09000 * 109.47123 * 330.02746 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1617 2.4116 7 7 2.5958 -0.6536 3.4578 8 6 2.7361 0.0775 4.7196 9 6 3.2604 -0.8687 5.8015 10 6 3.4041 -0.1170 7.0997 11 1 3.1476 0.9310 7.1481 12 6 3.8631 -0.7670 8.2256 13 7 4.1760 -2.0430 8.1666 14 14 4.0420 0.1651 9.8346 15 1 3.6280 1.5775 9.6371 16 1 3.1807 -0.4628 10.8687 17 1 5.4588 0.1213 10.2772 18 6 2.0324 -0.7104 -1.2304 19 7 2.0338 -1.9998 -1.4328 20 7 2.5293 -2.2555 -2.5916 21 6 2.8753 -1.1416 -3.1772 22 7 2.5663 -0.1289 -2.3316 23 6 2.7686 1.3037 -2.5614 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 2.2491 -1.6317 1.1527 28 1 2.8258 -1.5949 3.4144 29 1 3.4378 0.9009 4.5863 30 1 1.7657 0.4722 5.0207 31 1 2.5589 -1.6924 5.9349 32 1 4.2308 -1.2631 5.5003 33 1 4.4993 -2.5003 8.9587 34 1 3.3209 -1.0446 -4.1562 35 1 1.8827 1.7240 -3.0375 36 1 2.9406 1.8039 -1.6083 37 1 3.6330 1.4493 -3.2093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320307699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:09 Heat of formation + Delta-G solvation = 42.464514 kcal Electronic energy + Delta-G solvation = -19695.204528 eV Core-core repulsion = 16509.094655 eV Total energy + Delta-G solvation = -3186.109872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.45340 -39.70671 -36.13409 -35.32607 -34.62409 -32.88479 -31.50505 -29.82118 -28.96064 -28.04464 -24.98619 -24.05559 -22.75284 -21.31681 -20.71636 -20.30692 -18.40505 -17.32032 -16.72560 -16.47146 -16.13991 -15.24232 -15.17505 -14.78315 -14.46782 -14.09669 -13.91856 -13.56900 -13.48382 -13.24909 -12.78476 -12.36545 -12.24534 -11.86776 -11.59329 -11.16838 -11.03990 -10.63937 -10.60672 -10.55733 -10.31996 -10.01567 -9.62573 -9.52130 -9.23316 -9.16534 -8.48755 -8.27193 -6.07439 -4.10167 1.41556 2.03814 2.56475 3.03646 3.29666 3.37322 3.42423 3.49919 3.83727 4.16163 4.25150 4.40544 4.54441 4.65740 4.68142 4.89487 4.98529 5.11476 5.29672 5.34545 5.53209 5.70292 5.76415 6.05226 6.29211 6.40048 6.43318 6.49299 6.77974 6.98320 7.21801 7.58646 7.65370 7.91717 8.26428 8.39124 8.43259 8.91033 8.97378 9.54539 11.04252 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.003099 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.589149 B = 9031.735629 C = 9279.319986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.256 3.744 3 H 0.102 0.898 4 N -0.743 5.743 5 C 0.703 3.297 6 O -0.600 6.600 7 N -0.735 5.735 8 C 0.140 3.860 9 C 0.012 3.988 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.169 3.831 19 N -0.282 5.282 20 N -0.295 5.295 21 C 0.150 3.850 22 N -0.471 5.471 23 C 0.067 3.933 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.404 0.596 28 H 0.395 0.605 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.220 0.780 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 5.110 -23.715 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.147 3.853 3 H 0.120 0.880 4 N -0.401 5.401 5 C 0.403 3.597 6 O -0.479 6.479 7 N -0.388 5.388 8 C 0.018 3.982 9 C -0.026 4.026 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.099 4.099 19 N -0.123 5.123 20 N -0.134 5.134 21 C -0.138 4.138 22 N -0.162 5.162 23 C -0.076 4.076 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.239 0.761 28 H 0.229 0.771 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.237 0.763 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.886 4.616 -23.291 24.060 hybrid contribution 0.692 0.894 0.415 1.204 sum -3.194 5.511 -22.876 23.747 Atomic orbital electron populations 1.22190 0.92972 1.03513 1.03008 1.18742 0.94395 0.94773 0.77369 0.88038 1.45060 1.72789 1.14180 1.08058 1.15967 0.78497 0.85047 0.80186 1.90878 1.57884 1.14388 1.84734 1.45539 1.69380 1.14110 1.09778 1.21615 1.00441 0.95569 0.80589 1.19340 0.96653 0.94673 0.91927 1.21083 1.44225 0.96642 0.93935 0.92169 1.25004 0.95239 0.94919 0.99195 1.69970 1.44599 1.09176 1.29511 0.86459 0.77707 0.80107 0.83298 1.19579 1.20948 1.20974 1.24956 1.01649 0.91338 0.92003 1.74227 1.17471 1.10580 1.10008 1.74278 1.14196 1.23005 1.01927 1.26499 1.04343 0.83441 0.99491 1.46173 1.45695 1.09682 1.14648 1.22230 1.04037 0.76410 1.04922 0.91259 0.90207 0.91938 0.76065 0.77131 0.92768 0.92647 0.95863 0.95944 0.92908 0.76346 0.89507 0.88579 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.47 37.16 0.35 -1.30 16 2 C 0.26 2.93 2.97 -69.08 -0.20 2.73 16 3 H 0.10 1.14 6.34 -51.93 -0.33 0.81 16 4 N -0.74 -10.06 5.07 -59.81 -0.30 -10.36 16 5 C 0.70 12.11 8.53 -86.91 -0.74 11.37 16 6 O -0.60 -12.12 16.01 5.29 0.08 -12.03 16 7 N -0.74 -13.12 5.56 -65.22 -0.36 -13.48 16 8 C 0.14 3.01 5.61 -4.04 -0.02 2.98 16 9 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 10 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 14 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 C 0.17 1.89 6.82 -154.99 -1.06 0.83 16 19 N -0.28 -3.85 11.92 32.79 0.39 -3.46 16 20 N -0.29 -3.79 12.21 29.69 0.36 -3.43 16 21 C 0.15 1.27 12.74 -89.95 -1.15 0.12 16 22 N -0.47 -3.84 3.15 -122.69 -0.39 -4.23 16 23 C 0.07 0.25 11.00 59.85 0.66 0.91 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.40 5.15 8.37 -40.82 -0.34 4.80 16 28 H 0.40 6.26 8.49 -40.82 -0.35 5.92 16 29 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.22 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.10 0.40 7.06 -51.93 -0.37 0.04 16 37 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -35.32 322.51 -7.51 -42.83 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.15 Total: 3.88 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.71 Total: 4.56 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.44 Total: -60.50 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.32 -7.51 -42.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320307699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.295 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds