Wall clock time and date at job start Mon Mar 30 2020 00:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46218 * 2 1 4 4 N 1.46498 * 109.47203 * 119.99591 * 2 1 3 5 5 C 1.34781 * 120.00157 * 275.00727 * 4 2 1 6 6 O 1.21587 * 119.99744 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99826 * 179.97438 * 5 4 2 8 8 C 1.46501 * 119.99672 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47018 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47177 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00193 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99801 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99976 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47400 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46645 * 120.00318 * 14 12 10 17 17 H 1.48501 * 109.47302 * 239.99830 * 14 12 10 18 18 C 1.50697 * 109.47357 * 239.99952 * 2 1 3 19 19 N 1.30519 * 126.34476 * 284.99585 * 18 2 1 20 20 N 1.28600 * 109.66808 * 179.73098 * 19 18 2 21 21 C 1.30516 * 109.67696 * 0.44987 * 20 19 18 22 22 N 1.35495 * 107.30468 * 359.55808 * 21 20 19 23 23 C 1.46499 * 126.97946 * 180.26092 * 22 21 20 24 24 H 1.09007 * 109.46681 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47661 * 299.99910 * 1 2 3 26 26 H 1.09006 * 109.47150 * 60.00641 * 1 2 3 27 27 H 0.96999 * 120.00142 * 94.99990 * 4 2 1 28 28 H 0.96999 * 120.00018 * 359.97438 * 7 5 4 29 29 H 1.09007 * 109.46848 * 300.00088 * 8 7 5 30 30 H 1.08998 * 109.47326 * 59.99780 * 8 7 5 31 31 H 1.09007 * 109.46977 * 299.99511 * 9 8 7 32 32 H 1.08998 * 109.47658 * 59.99486 * 9 8 7 33 33 H 0.96999 * 119.99848 * 179.97438 * 13 12 10 34 34 H 1.08002 * 126.35125 * 179.82818 * 21 20 19 35 35 H 1.09004 * 109.47293 * 90.03308 * 23 22 21 36 36 H 1.09007 * 109.47309 * 210.02845 * 23 22 21 37 37 H 1.09000 * 109.47123 * 330.02746 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1617 2.4116 7 7 2.5958 -0.6536 3.4578 8 6 2.7361 0.0775 4.7196 9 6 3.2604 -0.8687 5.8015 10 6 3.4041 -0.1170 7.0997 11 1 3.1476 0.9310 7.1481 12 6 3.8631 -0.7670 8.2256 13 7 4.1760 -2.0430 8.1666 14 14 4.0420 0.1651 9.8346 15 1 3.6280 1.5775 9.6371 16 1 3.1807 -0.4628 10.8687 17 1 5.4588 0.1213 10.2772 18 6 2.0324 -0.7104 -1.2304 19 7 2.0338 -1.9998 -1.4328 20 7 2.5293 -2.2555 -2.5916 21 6 2.8753 -1.1416 -3.1772 22 7 2.5663 -0.1289 -2.3316 23 6 2.7686 1.3037 -2.5614 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 2.2491 -1.6317 1.1527 28 1 2.8258 -1.5949 3.4144 29 1 3.4378 0.9009 4.5863 30 1 1.7657 0.4722 5.0207 31 1 2.5589 -1.6924 5.9349 32 1 4.2308 -1.2631 5.5003 33 1 4.4993 -2.5003 8.9587 34 1 3.3209 -1.0446 -4.1562 35 1 1.8827 1.7240 -3.0375 36 1 2.9406 1.8039 -1.6083 37 1 3.6330 1.4493 -3.2093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320307699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:08 Heat of formation + Delta-G solvation = 17.576473 kcal Electronic energy + Delta-G solvation = -19696.283754 eV Core-core repulsion = 16509.094655 eV Total energy + Delta-G solvation = -3187.189099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.19979 -41.08252 -37.34115 -36.30060 -35.94284 -34.82536 -32.75712 -31.15444 -30.24232 -28.48822 -26.75817 -25.17375 -23.52009 -22.94387 -22.05678 -21.37446 -19.66549 -18.43197 -18.13094 -17.43851 -17.30216 -16.63685 -16.49329 -16.03016 -15.82506 -15.31933 -15.10264 -14.83053 -14.33300 -14.28135 -13.98758 -13.68902 -13.21417 -13.17659 -12.94480 -12.68838 -12.49395 -12.43939 -12.22460 -11.67134 -11.50090 -11.40809 -11.22209 -11.15327 -10.60533 -10.51701 -10.32905 -9.81234 -8.22591 -6.33001 0.69137 1.36291 1.42550 1.43619 1.56756 1.74370 1.91249 2.12312 2.42600 3.00925 3.12403 3.30398 3.67495 3.83509 3.92441 4.07063 4.34107 4.41100 4.47558 4.54847 4.56860 4.68607 4.78284 4.86879 4.89465 5.03511 5.18157 5.31869 5.37867 5.51849 5.60984 5.79134 5.86240 5.97192 6.18118 6.80971 7.02796 7.36416 7.52010 7.65218 8.89663 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.003099 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.589149 B = 9031.735629 C = 9279.319986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.256 3.744 3 H 0.107 0.893 4 N -0.730 5.730 5 C 0.707 3.293 6 O -0.628 6.628 7 N -0.734 5.734 8 C 0.162 3.838 9 C 0.022 3.978 10 C -0.544 4.544 11 H 0.061 0.939 12 C 0.005 3.995 13 N -0.928 5.928 14 Si 0.967 3.033 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.160 3.840 19 N -0.319 5.319 20 N -0.346 5.346 21 C 0.171 3.829 22 N -0.466 5.466 23 C 0.058 3.942 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.409 0.591 28 H 0.405 0.595 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.265 0.735 34 H 0.267 0.733 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 6.497 -25.064 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.148 3.852 3 H 0.125 0.875 4 N -0.387 5.387 5 C 0.407 3.593 6 O -0.510 6.510 7 N -0.388 5.388 8 C 0.038 3.962 9 C -0.016 4.016 10 C -0.582 4.582 11 H 0.080 0.920 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.110 4.110 19 N -0.159 5.159 20 N -0.185 5.185 21 C -0.118 4.118 22 N -0.156 5.156 23 C -0.083 4.083 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.245 0.755 28 H 0.240 0.760 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.282 0.718 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.669 5.995 -24.691 25.672 hybrid contribution 0.638 0.474 0.700 1.059 sum -3.031 6.470 -23.991 25.032 Atomic orbital electron populations 1.22112 0.92238 1.03162 1.03442 1.18859 0.94936 0.94729 0.76642 0.87549 1.44972 1.71741 1.14304 1.07660 1.15945 0.78097 0.84653 0.80653 1.90856 1.59117 1.15686 1.85293 1.45272 1.69895 1.14469 1.09141 1.21102 0.99472 0.94542 0.81122 1.19148 0.95458 0.94559 0.92439 1.21499 1.44343 0.97038 0.95323 0.92027 1.25903 0.94744 0.95801 1.02925 1.70078 1.45292 1.10700 1.30724 0.85371 0.77868 0.78995 0.78654 1.18719 1.20337 1.20318 1.24712 1.02482 0.91049 0.92725 1.74122 1.18734 1.12055 1.11028 1.74184 1.16492 1.25450 1.02391 1.27352 1.01814 0.82304 1.00284 1.46403 1.44402 1.11310 1.13449 1.22609 1.06388 0.73766 1.05519 0.91966 0.91726 0.89468 0.75500 0.75983 0.93436 0.93394 0.97449 0.97498 0.92606 0.71785 0.87466 0.89103 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.47 71.98 0.68 -2.36 16 2 C 0.26 5.65 2.97 44.25 0.13 5.78 16 3 H 0.11 2.26 6.34 -2.38 -0.02 2.25 16 4 N -0.73 -19.55 5.07 -461.40 -2.34 -21.89 16 5 C 0.71 24.24 8.53 179.05 1.53 25.76 16 6 O -0.63 -25.25 16.01 -3.99 -0.06 -25.31 16 7 N -0.73 -26.35 5.56 -478.53 -2.66 -29.01 16 8 C 0.16 7.00 5.61 86.38 0.48 7.49 16 9 C 0.02 1.10 5.09 29.85 0.15 1.25 16 10 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 11 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 12 C 0.00 0.27 5.46 84.65 0.46 0.73 16 13 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 14 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 C 0.16 3.40 6.82 137.98 0.94 4.34 16 19 N -0.32 -8.59 11.92 -50.16 -0.60 -9.19 16 20 N -0.35 -8.58 12.21 -59.99 -0.73 -9.31 16 21 C 0.17 2.45 12.74 180.11 2.30 4.74 16 22 N -0.47 -6.45 3.15 -542.06 -1.71 -8.16 16 23 C 0.06 0.25 11.00 127.77 1.41 1.66 16 24 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.41 10.40 8.37 -92.71 -0.78 9.62 16 28 H 0.41 12.95 8.49 -92.71 -0.79 12.17 16 29 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.01 0.38 8.14 -2.38 -0.02 0.37 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.27 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 36 H 0.09 0.54 7.06 -2.38 -0.02 0.52 16 37 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: -1.00 -76.99 322.51 2.06 -74.93 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.47 Total: 17.71 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 8.31 Total: 19.17 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -7.75 Total: -132.28 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.06 Total: -25.31 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -76.99 2.06 -74.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320307699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.505 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds