Wall clock time and date at job start Mon Mar 30 2020 00:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1 6 6 C 1.36941 * 119.99931 * 179.97438 * 5 4 2 7 7 H 1.07992 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99553 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00490 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99736 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46976 * 89.99540 * 10 8 6 12 12 H 1.48501 * 109.47185 * 209.99751 * 10 8 6 13 13 H 1.48503 * 109.47056 * 329.99702 * 10 8 6 14 14 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 15 15 C 1.34777 * 120.00199 * 275.00460 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2 18 18 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 19 19 C 1.53000 * 109.47245 * 59.72201 * 17 15 14 20 20 N 1.46491 * 109.46957 * 179.72354 * 17 15 14 21 21 C 1.34434 * 126.82168 * 274.99875 * 20 17 15 22 22 N 1.30833 * 108.07891 * 179.97438 * 21 20 17 23 23 C 1.33246 * 109.82611 * 359.97438 * 22 21 20 24 24 N 1.30711 * 108.94832 * 359.75337 * 23 22 21 25 25 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 26 26 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 27 27 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 29 29 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 30 30 H 0.97002 * 119.99978 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00452 * 180.02562 * 9 8 6 32 32 H 0.97000 * 119.99484 * 94.99557 * 14 2 1 33 33 H 1.09001 * 109.46739 * 299.99817 * 19 17 15 34 34 H 1.08996 * 109.46783 * 59.99559 * 19 17 15 35 35 H 1.08994 * 109.47175 * 180.02562 * 19 17 15 36 36 H 1.08000 * 125.96273 * 359.92310 * 21 20 17 37 37 H 1.08005 * 125.52263 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2068 7 1 3.6467 -1.8445 -3.0513 8 6 5.5672 -1.5379 -2.1514 9 7 6.2218 -1.0429 -1.1224 10 14 6.4999 -2.3739 -3.5372 11 1 6.8615 -1.3679 -4.5679 12 1 7.7357 -2.9959 -2.9976 13 1 5.6440 -3.4226 -4.1479 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8589 1.1586 2.4115 17 6 2.6553 -0.7271 3.5861 18 1 1.9840 -1.5491 3.8351 19 6 4.0567 -1.2776 3.3144 20 7 2.7095 0.2155 4.7061 21 6 3.7126 1.0609 4.9998 22 7 3.3781 1.7307 6.0727 23 6 2.1737 1.3428 6.4905 24 7 1.7210 0.4204 5.6826 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 -1.2952 29 1 1.7516 -0.1583 -2.1370 30 1 3.9824 -0.4622 -0.4319 31 1 7.1886 -1.1119 -1.0839 32 1 2.2490 -1.6317 1.1526 33 1 4.0162 -1.9789 2.4810 34 1 4.7278 -0.4556 3.0653 35 1 4.4241 -1.7907 4.2030 36 1 4.6343 1.1679 4.4471 37 1 1.6538 1.7311 7.3539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321488332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:31 Heat of formation + Delta-G solvation = 66.989786 kcal Electronic energy + Delta-G solvation = -20512.620727 eV Core-core repulsion = 17327.574350 eV Total energy + Delta-G solvation = -3185.046377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07800 -39.78587 -36.44305 -34.96937 -33.78225 -31.68253 -31.22917 -30.28415 -29.41131 -25.83380 -25.23967 -23.01552 -22.35711 -21.82997 -20.70966 -20.12674 -17.87956 -17.09905 -17.05383 -15.90377 -15.49939 -15.16880 -14.82062 -14.47609 -14.23753 -13.94747 -13.75718 -13.36857 -12.75668 -12.57196 -12.49094 -12.35620 -12.29554 -12.18253 -11.73454 -11.51663 -11.00831 -10.90160 -10.57750 -10.33420 -10.14623 -9.98982 -9.84790 -9.71026 -9.39647 -9.02427 -8.89497 -7.07396 -5.89125 -3.18810 1.62300 2.15663 2.60620 3.02522 3.30390 3.36049 3.41794 3.42754 4.32183 4.38101 4.47984 4.59805 4.67510 4.87111 5.16069 5.25011 5.36576 5.43074 5.43909 5.49433 5.54588 5.89450 5.93768 5.98497 6.07581 6.23296 6.29371 6.34423 6.46278 6.57147 6.73932 6.80110 7.58975 7.60427 8.11085 8.25678 8.29253 9.41446 9.95492 10.31383 11.33233 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023148 B = 0.004830 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.321586 B = 5796.248953 C = 6685.902310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.071 0.929 8 C -0.009 4.009 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.702 5.702 15 C 0.505 3.495 16 O -0.531 6.531 17 C 0.139 3.861 18 H 0.128 0.872 19 C -0.162 4.162 20 N -0.358 5.358 21 C 0.273 3.727 22 N -0.550 5.550 23 C 0.195 3.805 24 N -0.319 5.319 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.406 0.594 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.216 0.784 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -1.370 10.111 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.375 4.375 7 H 0.089 0.911 8 C -0.206 4.206 9 N -0.580 5.580 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 N -0.354 5.354 15 C 0.288 3.712 16 O -0.407 6.407 17 C 0.032 3.968 18 H 0.145 0.855 19 C -0.220 4.220 20 N -0.148 5.148 21 C -0.023 4.023 22 N -0.277 5.277 23 C -0.108 4.108 24 N -0.146 5.146 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.241 0.759 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.434 -0.763 10.160 13.226 hybrid contribution 0.960 -0.774 -0.843 1.494 sum -7.474 -1.537 9.316 12.042 Atomic orbital electron populations 1.22103 0.95326 1.01989 1.02272 1.21295 0.93468 0.98009 0.84228 0.89451 1.20993 0.86902 0.97044 0.93461 1.42344 0.99666 1.70348 1.25314 1.19216 0.89450 1.29567 0.99312 0.91117 1.24721 0.96378 1.01416 0.98063 1.69642 1.07297 1.50759 1.30260 0.86198 0.79483 0.79021 0.81498 1.21672 1.21732 1.20748 1.45915 1.66120 1.14466 1.08890 1.20469 0.78476 0.87639 0.84654 1.90751 1.49759 1.15545 1.84644 1.21275 1.01769 0.90787 0.82966 0.85454 1.22201 0.92276 1.03192 1.04374 1.50069 1.13175 1.30491 1.21085 1.25957 0.95228 0.87517 0.93635 1.70569 1.15591 1.28224 1.13321 1.25930 0.91467 0.93832 0.99548 1.77986 1.12272 1.22388 1.01928 0.92502 0.91475 0.92434 0.95616 0.94709 0.78070 0.93437 0.75904 0.88114 0.90176 0.90354 0.76743 0.76873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 2 C 0.13 2.10 2.73 -67.93 -0.19 1.92 16 3 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 4 C 0.14 2.60 5.82 -4.04 -0.02 2.57 16 5 N -0.73 -16.82 5.43 -59.91 -0.33 -17.14 16 6 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 7 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 8 C -0.01 -0.25 5.50 -17.44 -0.10 -0.35 16 9 N -0.93 -26.21 13.06 55.49 0.72 -25.49 16 10 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 N -0.70 -10.00 4.41 -53.81 -0.24 -10.24 16 15 C 0.50 7.63 7.19 -10.98 -0.08 7.55 16 16 O -0.53 -10.18 16.08 5.55 0.09 -10.09 16 17 C 0.14 1.68 3.77 -69.09 -0.26 1.42 16 18 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 19 C -0.16 -1.68 8.75 37.16 0.33 -1.35 16 20 N -0.36 -5.01 3.04 -57.25 -0.17 -5.18 16 21 C 0.27 3.74 11.77 -90.65 -1.07 2.67 16 22 N -0.55 -8.05 11.19 -15.83 -0.18 -8.23 16 23 C 0.20 2.62 13.03 -91.81 -1.20 1.42 16 24 N -0.32 -4.75 12.70 29.29 0.37 -4.38 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.39 9.33 7.33 -40.82 -0.30 9.03 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.41 5.18 8.01 -40.82 -0.33 4.85 16 33 H 0.10 1.05 7.55 -51.93 -0.39 0.66 16 34 H 0.08 0.90 7.22 -51.93 -0.38 0.53 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.22 2.32 7.32 -52.49 -0.38 1.93 16 37 H 0.21 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -33.45 321.02 -7.39 -40.84 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.10 Total: 11.22 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -2.38 Total: 7.61 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: 0.18 Total: -70.66 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.45 -7.39 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321488332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.834 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds