Wall clock time and date at job start Mon Mar 30 2020 00:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1 6 6 C 1.36941 * 119.99931 * 179.97438 * 5 4 2 7 7 H 1.07992 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99553 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00490 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99736 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46976 * 89.99540 * 10 8 6 12 12 H 1.48501 * 109.47185 * 209.99751 * 10 8 6 13 13 H 1.48503 * 109.47056 * 329.99702 * 10 8 6 14 14 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 15 15 C 1.34777 * 120.00199 * 275.00460 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2 18 18 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 19 19 C 1.53000 * 109.47245 * 59.72201 * 17 15 14 20 20 N 1.46491 * 109.46957 * 179.72354 * 17 15 14 21 21 C 1.34434 * 126.82168 * 274.99875 * 20 17 15 22 22 N 1.30833 * 108.07891 * 179.97438 * 21 20 17 23 23 C 1.33246 * 109.82611 * 359.97438 * 22 21 20 24 24 N 1.30711 * 108.94832 * 359.75337 * 23 22 21 25 25 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 26 26 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 27 27 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 29 29 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 30 30 H 0.97002 * 119.99978 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00452 * 180.02562 * 9 8 6 32 32 H 0.97000 * 119.99484 * 94.99557 * 14 2 1 33 33 H 1.09001 * 109.46739 * 299.99817 * 19 17 15 34 34 H 1.08996 * 109.46783 * 59.99559 * 19 17 15 35 35 H 1.08994 * 109.47175 * 180.02562 * 19 17 15 36 36 H 1.08000 * 125.96273 * 359.92310 * 21 20 17 37 37 H 1.08005 * 125.52263 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1838 -1.4387 -2.2068 7 1 3.6467 -1.8445 -3.0513 8 6 5.5672 -1.5379 -2.1514 9 7 6.2218 -1.0429 -1.1224 10 14 6.4999 -2.3739 -3.5372 11 1 6.8615 -1.3679 -4.5679 12 1 7.7357 -2.9959 -2.9976 13 1 5.6440 -3.4226 -4.1479 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8589 1.1586 2.4115 17 6 2.6553 -0.7271 3.5861 18 1 1.9840 -1.5491 3.8351 19 6 4.0567 -1.2776 3.3144 20 7 2.7095 0.2155 4.7061 21 6 3.7126 1.0609 4.9998 22 7 3.3781 1.7307 6.0727 23 6 2.1737 1.3428 6.4905 24 7 1.7210 0.4204 5.6826 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 -1.2952 29 1 1.7516 -0.1583 -2.1370 30 1 3.9824 -0.4622 -0.4319 31 1 7.1886 -1.1119 -1.0839 32 1 2.2490 -1.6317 1.1526 33 1 4.0162 -1.9789 2.4810 34 1 4.7278 -0.4556 3.0653 35 1 4.4241 -1.7907 4.2030 36 1 4.6343 1.1679 4.4471 37 1 1.6538 1.7311 7.3539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321488332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:30 Heat of formation + Delta-G solvation = 44.725528 kcal Electronic energy + Delta-G solvation = -20513.586178 eV Core-core repulsion = 17327.574350 eV Total energy + Delta-G solvation = -3186.011828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.11912 -41.01689 -37.84794 -36.05861 -35.49153 -33.15207 -32.36174 -31.75464 -30.48426 -27.42679 -26.27684 -24.59741 -23.67163 -22.86331 -21.96311 -21.29695 -19.35030 -18.66428 -18.17513 -17.14272 -16.74617 -16.50101 -16.19696 -15.67700 -15.39774 -15.34796 -15.11752 -14.96133 -13.99502 -13.83368 -13.68933 -13.47258 -13.40535 -13.31542 -13.08722 -12.79123 -12.65991 -12.49822 -12.14514 -11.89970 -11.70380 -11.49881 -11.06706 -10.95460 -10.78733 -10.52363 -10.15947 -8.98156 -7.92026 -5.20583 0.56609 1.16217 1.42425 1.51141 1.52758 1.59965 1.98613 2.16971 2.58313 3.35343 3.42793 3.45078 3.53225 3.76131 3.80782 3.96623 4.03695 4.25834 4.28190 4.50283 4.57676 4.64303 4.75621 4.84205 4.93427 5.07056 5.09141 5.23895 5.27139 5.46447 5.49197 5.55324 5.75908 6.29264 6.43479 7.06180 7.09524 7.37828 8.09373 8.34529 9.30521 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023148 B = 0.004830 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.321586 B = 5796.248953 C = 6685.902310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.142 3.858 3 H 0.058 0.942 4 C 0.146 3.854 5 N -0.742 5.742 6 C -0.245 4.245 7 H 0.076 0.924 8 C -0.065 4.065 9 N -0.962 5.962 10 Si 0.966 3.034 11 H -0.294 1.294 12 H -0.296 1.296 13 H -0.269 1.269 14 N -0.694 5.694 15 C 0.504 3.496 16 O -0.576 6.576 17 C 0.146 3.854 18 H 0.152 0.848 19 C -0.154 4.154 20 N -0.364 5.364 21 C 0.267 3.733 22 N -0.572 5.572 23 C 0.194 3.806 24 N -0.345 5.345 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.376 0.624 31 H 0.251 0.749 32 H 0.415 0.585 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.235 0.765 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -2.594 9.999 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.037 3.963 3 H 0.076 0.924 4 C 0.019 3.981 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.094 0.906 8 C -0.258 4.258 9 N -0.612 5.612 10 Si 0.796 3.204 11 H -0.222 1.222 12 H -0.223 1.223 13 H -0.194 1.194 14 N -0.346 5.346 15 C 0.289 3.711 16 O -0.455 6.455 17 C 0.040 3.960 18 H 0.169 0.831 19 C -0.212 4.212 20 N -0.154 5.154 21 C -0.030 4.030 22 N -0.299 5.299 23 C -0.108 4.108 24 N -0.172 5.172 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.209 0.791 31 H 0.059 0.941 32 H 0.252 0.748 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.252 0.748 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.208 -2.027 10.024 13.762 hybrid contribution 1.123 -0.356 -0.829 1.440 sum -8.085 -2.383 9.196 12.474 Atomic orbital electron populations 1.22008 0.92900 1.03291 1.02397 1.21103 0.95153 0.96168 0.83862 0.92352 1.21113 0.84253 0.98120 0.94567 1.42488 1.01641 1.69988 1.24407 1.19582 0.89852 1.28493 0.99768 0.90565 1.25413 0.97376 1.02856 1.00184 1.69775 1.07012 1.52494 1.31942 0.85257 0.78119 0.78130 0.78892 1.22188 1.22294 1.19418 1.45841 1.65594 1.14766 1.08391 1.20993 0.77527 0.87138 0.85492 1.90730 1.51801 1.17553 1.85421 1.21378 1.03062 0.90511 0.81091 0.83095 1.22171 0.90938 1.02754 1.05355 1.50180 1.13071 1.30851 1.21266 1.26428 0.95845 0.87138 0.93579 1.70590 1.16412 1.28899 1.14030 1.26645 0.91120 0.93063 1.00005 1.77931 1.13136 1.23433 1.02672 0.93545 0.90197 0.90479 0.93769 0.94613 0.79102 0.94055 0.74825 0.88021 0.91357 0.88226 0.74850 0.73643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.48 71.98 0.68 -2.91 16 2 C 0.14 4.33 2.73 44.99 0.12 4.45 16 3 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 4 C 0.15 5.05 5.82 86.38 0.50 5.55 16 5 N -0.74 -33.55 5.43 -343.46 -1.87 -35.42 16 6 C -0.25 -12.51 9.99 84.03 0.84 -11.67 16 7 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 8 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 9 N -0.96 -54.29 13.06 21.65 0.28 -54.00 16 10 Si 0.97 43.29 29.55 68.60 2.03 45.32 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 14 N -0.69 -19.12 4.41 -442.54 -1.95 -21.07 16 15 C 0.50 15.00 7.19 87.66 0.63 15.63 16 16 O -0.58 -22.31 16.08 -3.04 -0.05 -22.36 16 17 C 0.15 3.35 3.77 44.25 0.17 3.52 16 18 H 0.15 2.74 8.14 -2.38 -0.02 2.72 16 19 C -0.15 -2.99 8.75 71.98 0.63 -2.36 16 20 N -0.36 -9.86 3.04 -335.03 -1.02 -10.88 16 21 C 0.27 7.15 11.77 180.36 2.12 9.27 16 22 N -0.57 -16.35 11.19 -203.99 -2.28 -18.63 16 23 C 0.19 5.00 13.03 180.76 2.36 7.36 16 24 N -0.34 -9.95 12.70 -61.24 -0.78 -10.73 16 25 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.38 18.24 7.33 -92.71 -0.68 17.56 16 31 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.41 9.95 8.01 -92.71 -0.74 9.20 16 33 H 0.10 1.98 7.55 -2.39 -0.02 1.96 16 34 H 0.07 1.50 7.22 -2.39 -0.02 1.49 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.24 4.95 7.32 -2.91 -0.02 4.93 16 37 H 0.25 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -70.95 321.02 2.56 -68.40 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.33 Total: 33.57 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 8.52 Total: 25.83 kcal Atomic # 7 Polarization: -143.14 SS G_CDS: -7.61 Total: -150.75 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -70.95 2.56 -68.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321488332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.122 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds