Wall clock time and date at job start Mon Mar 30 2020 00:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47276 * 2 1 4 4 C 1.53003 * 109.47049 * 239.99697 * 2 1 3 5 5 N 1.46500 * 109.47151 * 185.00025 * 4 2 1 6 6 C 1.46507 * 119.99848 * 270.00525 * 5 4 2 7 7 C 1.36933 * 119.99760 * 90.00257 * 5 4 2 8 8 H 1.08001 * 120.00109 * 23.62628 * 7 5 4 9 9 C 1.38812 * 119.99714 * 203.63015 * 7 5 4 10 10 N 1.31616 * 120.00556 * 12.03351 * 9 7 5 11 11 Si 1.86804 * 119.99808 * 192.03660 * 9 7 5 12 12 H 1.48500 * 109.47012 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47125 * 119.99857 * 11 9 7 14 14 H 1.48493 * 109.47091 * 239.99581 * 11 9 7 15 15 N 1.46498 * 109.46792 * 120.00219 * 2 1 3 16 16 C 1.34779 * 119.99701 * 274.99526 * 15 2 1 17 17 O 1.21618 * 120.00180 * 355.09856 * 16 15 2 18 18 C 1.47235 * 119.99851 * 175.10092 * 16 15 2 19 19 C 1.37017 * 127.18776 * 4.85481 * 18 16 15 20 20 N 1.33322 * 106.36986 * 179.97438 * 19 18 16 21 21 N 1.28517 * 109.43733 * 359.97438 * 20 19 18 22 22 N 1.28712 * 110.64326 * 359.75363 * 21 20 19 23 23 C 1.46492 * 126.03836 * 180.26305 * 22 21 20 24 24 H 1.09002 * 109.47307 * 60.00190 * 1 2 3 25 25 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47482 * 299.99754 * 1 2 3 27 27 H 1.08997 * 109.47434 * 305.00685 * 4 2 1 28 28 H 1.09003 * 109.46658 * 65.00517 * 4 2 1 29 29 H 1.09001 * 109.46959 * 95.13137 * 6 5 4 30 30 H 1.09001 * 109.46256 * 215.12790 * 6 5 4 31 31 H 1.08998 * 109.46658 * 335.12568 * 6 5 4 32 32 H 0.96997 * 120.00398 * 180.02562 * 10 9 7 33 33 H 0.97002 * 120.00004 * 95.00465 * 15 2 1 34 34 H 1.07990 * 126.81459 * 359.97438 * 19 18 16 35 35 H 1.08993 * 109.47310 * 272.25428 * 23 22 21 36 36 H 1.09005 * 109.47117 * 32.25804 * 23 22 21 37 37 H 1.09001 * 109.47120 * 152.25326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3343 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5412 -2.8461 -0.5273 9 6 5.3766 -1.8248 -0.1022 10 7 5.9518 -0.6478 0.0245 11 14 6.2987 -3.3728 0.3907 12 1 5.4374 -4.5589 0.1528 13 1 7.5379 -3.4899 -0.4192 14 1 6.6536 -3.3001 1.8308 15 7 2.0183 -0.6907 1.1961 16 6 2.1470 -0.0183 2.3571 17 8 1.9437 1.1803 2.3915 18 6 2.5339 -0.7348 3.5838 19 6 2.8856 -2.0543 3.6962 20 7 3.1554 -2.2627 4.9851 21 7 2.9903 -1.1688 5.6390 22 7 2.6238 -0.2197 4.8505 23 6 2.3481 1.1656 5.2391 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 1.7517 -0.1583 -2.1369 29 1 4.6156 0.9368 -0.9769 30 1 5.2328 -0.2046 -2.1954 31 1 3.7753 0.7587 -2.5360 32 1 6.8545 -0.5841 0.3736 33 1 2.2490 -1.6318 1.1525 34 1 2.9345 -2.7811 2.8990 35 1 1.3045 1.2578 5.5396 36 1 2.9923 1.4440 6.0732 37 1 2.5426 1.8257 4.3938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322145891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:58 Heat of formation + Delta-G solvation = 86.391970 kcal Electronic energy + Delta-G solvation = -21349.944662 eV Core-core repulsion = 18165.739627 eV Total energy + Delta-G solvation = -3184.205035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.00145 -39.14471 -36.43880 -34.57097 -33.94148 -32.01104 -30.90858 -29.71861 -27.85382 -26.25119 -25.67489 -23.93343 -22.37571 -21.58886 -20.30915 -19.86834 -17.81465 -16.79826 -16.54298 -16.31489 -15.59456 -14.91847 -14.55303 -14.18488 -13.79616 -13.63460 -13.21205 -13.14040 -12.94187 -12.83159 -12.34313 -12.07263 -11.78101 -11.48571 -11.38428 -10.89540 -10.88405 -10.73109 -10.49830 -10.34669 -10.06851 -9.98625 -9.89844 -9.62401 -9.20938 -8.64136 -8.46372 -6.83815 -5.80558 -3.28968 1.24913 2.34645 2.58406 3.32748 3.40208 3.44048 3.50813 3.66059 4.41806 4.59484 4.80712 5.04936 5.09910 5.26063 5.31628 5.43157 5.48203 5.56109 5.73657 5.84973 5.89289 6.07996 6.14164 6.24069 6.36404 6.39533 6.59925 6.67986 6.78852 7.05252 7.30727 7.66115 7.72980 8.00714 8.30038 8.54906 8.63988 9.13467 9.77517 10.27666 11.22723 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.008978 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.945079 B = 3117.855672 C = 4313.425937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.081 0.919 4 C 0.141 3.859 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.264 4.264 8 H 0.068 0.932 9 C 0.012 3.988 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.288 1.288 15 N -0.665 5.665 16 C 0.597 3.403 17 O -0.558 6.558 18 C -0.054 4.054 19 C 0.005 3.995 20 N -0.277 5.277 21 N -0.074 5.074 22 N -0.261 5.261 23 C 0.078 3.922 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.040 0.960 31 H -0.002 1.002 32 H 0.252 0.748 33 H 0.408 0.592 34 H 0.198 0.802 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 1.920 3.301 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.099 0.901 4 C 0.013 3.987 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.394 4.394 8 H 0.085 0.915 9 C -0.188 4.188 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.214 1.214 15 N -0.314 5.314 16 C 0.381 3.619 17 O -0.437 6.437 18 C -0.188 4.188 19 C -0.155 4.155 20 N -0.140 5.140 21 N -0.054 5.054 22 N -0.057 5.057 23 C -0.063 4.063 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.245 0.755 34 H 0.215 0.785 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.333 2.454 4.793 10.775 hybrid contribution 0.672 -0.764 -0.660 1.213 sum -8.661 1.689 4.133 9.744 Atomic orbital electron populations 1.22173 0.96539 1.01549 1.01679 1.21973 0.91880 0.98649 0.86397 0.90069 1.21215 0.86089 0.98025 0.93398 1.43881 0.98809 1.22672 1.66578 1.20807 0.92870 0.90534 0.94051 1.19104 0.98123 0.89137 1.33009 0.91453 1.25017 0.98799 0.96110 0.98911 1.70062 1.14262 1.21403 1.48133 0.86390 0.80313 0.82981 0.78189 1.20018 1.21594 1.21422 1.45427 1.63709 1.14569 1.07699 1.16574 0.77389 0.85955 0.82024 1.90700 1.53214 1.13857 1.85977 1.22122 1.13003 0.95295 0.88407 1.23910 1.01433 0.94552 0.95621 1.74833 1.17889 1.16733 1.04575 1.78169 1.16155 0.91837 1.19284 1.47519 1.41824 1.11421 1.04967 1.22504 1.03361 0.75840 1.04611 0.91909 0.92748 0.93052 0.93116 0.92693 0.95129 0.94074 0.98391 0.93751 0.75521 0.78518 0.89167 0.88418 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 2 C 0.12 2.02 2.92 -67.93 -0.20 1.82 16 3 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 4 C 0.14 2.50 5.36 -4.04 -0.02 2.48 16 5 N -0.60 -13.44 2.81 -181.11 -0.51 -13.95 16 6 C 0.16 3.78 9.02 59.85 0.54 4.32 16 7 C -0.26 -6.40 8.00 -15.06 -0.12 -6.52 16 8 H 0.07 1.56 7.85 -52.49 -0.41 1.15 16 9 C 0.01 0.30 5.12 -17.43 -0.09 0.21 16 10 N -0.90 -24.84 10.69 55.49 0.59 -24.25 16 11 Si 0.89 20.73 29.57 -169.99 -5.03 15.70 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 N -0.67 -11.92 4.48 -54.94 -0.25 -12.17 16 16 C 0.60 11.28 7.77 -12.60 -0.10 11.18 16 17 O -0.56 -11.35 14.42 5.26 0.08 -11.27 16 18 C -0.05 -0.97 6.98 -82.33 -0.57 -1.55 16 19 C 0.01 0.09 11.55 -17.35 -0.20 -0.11 16 20 N -0.28 -5.20 12.35 30.47 0.38 -4.83 16 21 N -0.07 -1.32 13.14 60.35 0.79 -0.53 16 22 N -0.26 -4.33 3.79 -64.12 -0.24 -4.57 16 23 C 0.08 0.95 11.03 59.84 0.66 1.61 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.84 8.03 -51.93 -0.42 0.43 16 28 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 29 H 0.03 0.80 7.33 -51.93 -0.38 0.41 16 30 H 0.04 1.04 7.36 -51.93 -0.38 0.65 16 31 H 0.00 -0.05 7.83 -51.93 -0.41 -0.46 16 32 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.41 7.16 6.43 -40.82 -0.26 6.89 16 34 H 0.20 3.02 7.56 -52.49 -0.40 2.62 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.12 1.61 6.26 -51.93 -0.32 1.29 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -30.86 312.84 -4.25 -35.12 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.03 Total: 4.40 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 0.25 Total: 11.64 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.76 Total: -60.30 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.86 -4.25 -35.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322145891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.509 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds