Wall clock time and date at job start Mon Mar 30 2020 00:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47276 * 2 1 4 4 C 1.53003 * 109.47049 * 239.99697 * 2 1 3 5 5 N 1.46500 * 109.47151 * 185.00025 * 4 2 1 6 6 C 1.46507 * 119.99848 * 270.00525 * 5 4 2 7 7 C 1.36933 * 119.99760 * 90.00257 * 5 4 2 8 8 H 1.08001 * 120.00109 * 23.62628 * 7 5 4 9 9 C 1.38812 * 119.99714 * 203.63015 * 7 5 4 10 10 N 1.31616 * 120.00556 * 12.03351 * 9 7 5 11 11 Si 1.86804 * 119.99808 * 192.03660 * 9 7 5 12 12 H 1.48500 * 109.47012 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47125 * 119.99857 * 11 9 7 14 14 H 1.48493 * 109.47091 * 239.99581 * 11 9 7 15 15 N 1.46498 * 109.46792 * 120.00219 * 2 1 3 16 16 C 1.34779 * 119.99701 * 274.99526 * 15 2 1 17 17 O 1.21618 * 120.00180 * 355.09856 * 16 15 2 18 18 C 1.47235 * 119.99851 * 175.10092 * 16 15 2 19 19 C 1.37017 * 127.18776 * 4.85481 * 18 16 15 20 20 N 1.33322 * 106.36986 * 179.97438 * 19 18 16 21 21 N 1.28517 * 109.43733 * 359.97438 * 20 19 18 22 22 N 1.28712 * 110.64326 * 359.75363 * 21 20 19 23 23 C 1.46492 * 126.03836 * 180.26305 * 22 21 20 24 24 H 1.09002 * 109.47307 * 60.00190 * 1 2 3 25 25 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47482 * 299.99754 * 1 2 3 27 27 H 1.08997 * 109.47434 * 305.00685 * 4 2 1 28 28 H 1.09003 * 109.46658 * 65.00517 * 4 2 1 29 29 H 1.09001 * 109.46959 * 95.13137 * 6 5 4 30 30 H 1.09001 * 109.46256 * 215.12790 * 6 5 4 31 31 H 1.08998 * 109.46658 * 335.12568 * 6 5 4 32 32 H 0.96997 * 120.00398 * 180.02562 * 10 9 7 33 33 H 0.97002 * 120.00004 * 95.00465 * 15 2 1 34 34 H 1.07990 * 126.81459 * 359.97438 * 19 18 16 35 35 H 1.08993 * 109.47310 * 272.25428 * 23 22 21 36 36 H 1.09005 * 109.47117 * 32.25804 * 23 22 21 37 37 H 1.09001 * 109.47120 * 152.25326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3343 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6023 8 1 3.5412 -2.8461 -0.5273 9 6 5.3766 -1.8248 -0.1022 10 7 5.9518 -0.6478 0.0245 11 14 6.2987 -3.3728 0.3907 12 1 5.4374 -4.5589 0.1528 13 1 7.5379 -3.4899 -0.4192 14 1 6.6536 -3.3001 1.8308 15 7 2.0183 -0.6907 1.1961 16 6 2.1470 -0.0183 2.3571 17 8 1.9437 1.1803 2.3915 18 6 2.5339 -0.7348 3.5838 19 6 2.8856 -2.0543 3.6962 20 7 3.1554 -2.2627 4.9851 21 7 2.9903 -1.1688 5.6390 22 7 2.6238 -0.2197 4.8505 23 6 2.3481 1.1656 5.2391 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2952 28 1 1.7517 -0.1583 -2.1369 29 1 4.6156 0.9368 -0.9769 30 1 5.2328 -0.2046 -2.1954 31 1 3.7753 0.7587 -2.5360 32 1 6.8545 -0.5841 0.3736 33 1 2.2490 -1.6318 1.1525 34 1 2.9345 -2.7811 2.8990 35 1 1.3045 1.2578 5.5396 36 1 2.9923 1.4440 6.0732 37 1 2.5426 1.8257 4.3938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322145891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:57 Heat of formation + Delta-G solvation = 64.610387 kcal Electronic energy + Delta-G solvation = -21350.889182 eV Core-core repulsion = 18165.739627 eV Total energy + Delta-G solvation = -3185.149555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.35292 -40.60921 -38.03770 -36.00577 -35.42611 -33.54140 -32.59132 -31.11064 -29.00162 -27.99653 -27.33162 -25.33169 -23.77975 -23.20939 -21.73718 -21.31227 -19.23012 -18.55288 -17.85179 -17.74065 -17.06568 -16.69935 -15.97922 -15.55041 -15.50680 -15.10396 -14.83845 -14.44735 -14.26296 -13.93385 -13.85252 -13.41249 -13.19812 -13.07644 -12.83554 -12.71944 -12.48961 -12.24269 -12.10843 -11.93830 -11.88310 -11.64797 -11.26589 -11.09464 -10.61047 -10.59706 -9.88984 -8.71904 -7.75998 -5.23589 -0.12263 1.11671 1.19199 1.47038 1.52938 1.59113 2.07287 2.30076 2.54342 3.31108 3.40744 3.52335 3.74718 3.77428 4.03016 4.19873 4.20621 4.47700 4.49520 4.56771 4.63591 4.82135 4.88796 4.91160 4.96623 5.06152 5.22001 5.34005 5.36985 5.45168 5.65848 5.72174 5.78588 6.37692 6.56455 7.14346 7.20400 7.23484 7.93516 8.39401 9.26648 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.008978 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.945079 B = 3117.855672 C = 4313.425937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.122 3.878 3 H 0.050 0.950 4 C 0.139 3.861 5 N -0.610 5.610 6 C 0.176 3.824 7 C -0.244 4.244 8 H 0.085 0.915 9 C -0.041 4.041 10 N -0.932 5.932 11 Si 0.941 3.059 12 H -0.252 1.252 13 H -0.304 1.304 14 H -0.305 1.305 15 N -0.664 5.664 16 C 0.594 3.406 17 O -0.578 6.578 18 C -0.071 4.071 19 C 0.006 3.994 20 N -0.300 5.300 21 N -0.078 5.078 22 N -0.254 5.254 23 C 0.069 3.931 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.078 0.922 29 H -0.005 1.005 30 H 0.013 0.987 31 H 0.031 0.969 32 H 0.239 0.761 33 H 0.410 0.590 34 H 0.215 0.785 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 1.082 2.878 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.068 0.932 4 C 0.013 3.987 5 N -0.333 5.333 6 C 0.031 3.969 7 C -0.374 4.374 8 H 0.103 0.897 9 C -0.237 4.237 10 N -0.579 5.579 11 Si 0.772 3.228 12 H -0.175 1.175 13 H -0.232 1.232 14 H -0.233 1.233 15 N -0.313 5.313 16 C 0.378 3.622 17 O -0.460 6.460 18 C -0.205 4.205 19 C -0.155 4.155 20 N -0.162 5.162 21 N -0.059 5.059 22 N -0.052 5.052 23 C -0.070 4.070 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.013 0.987 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.247 0.753 34 H 0.232 0.768 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.456 1.590 4.360 12.360 hybrid contribution 1.229 -0.444 -0.568 1.425 sum -10.227 1.146 3.792 10.967 Atomic orbital electron populations 1.22054 0.93212 1.02992 1.02383 1.21886 0.94323 0.96606 0.85672 0.93184 1.21445 0.83059 0.99751 0.94461 1.44110 1.00929 1.21964 1.66256 1.20511 0.92675 0.90142 0.93608 1.19493 0.97628 0.90165 1.30112 0.89699 1.25572 1.00117 0.97599 1.00407 1.70238 1.13860 1.23112 1.50690 0.85580 0.79129 0.81743 0.76380 1.17527 1.23188 1.23253 1.45486 1.63424 1.14618 1.07745 1.16697 0.77180 0.85768 0.82516 1.90686 1.54252 1.14658 1.86356 1.22123 1.14096 0.95593 0.88731 1.24244 1.00669 0.94856 0.95736 1.74808 1.18938 1.17387 1.05111 1.78104 1.16312 0.92049 1.19443 1.47873 1.40425 1.12419 1.04440 1.22832 1.05745 0.73518 1.04892 0.89661 0.90878 0.93932 0.90943 0.90374 0.98667 0.96832 0.95090 0.95125 0.75279 0.76812 0.86451 0.85835 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.48 71.98 0.68 -2.81 16 2 C 0.12 3.90 2.92 44.99 0.13 4.04 16 3 H 0.05 1.94 7.51 -2.39 -0.02 1.92 16 4 C 0.14 4.50 5.36 86.38 0.46 4.96 16 5 N -0.61 -26.43 2.81 -726.91 -2.05 -28.48 16 6 C 0.18 8.17 9.02 127.77 1.15 9.33 16 7 C -0.24 -11.40 8.00 84.03 0.67 -10.72 16 8 H 0.09 3.66 7.85 -2.91 -0.02 3.63 16 9 C -0.04 -2.12 5.12 84.86 0.43 -1.69 16 10 N -0.93 -53.02 10.69 21.65 0.23 -52.79 16 11 Si 0.94 42.62 29.57 68.60 2.03 44.65 16 12 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 13 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 15 N -0.66 -22.85 4.48 -445.99 -2.00 -24.84 16 16 C 0.59 22.10 7.77 86.61 0.67 22.78 16 17 O -0.58 -23.46 14.42 -4.09 -0.06 -23.52 16 18 C -0.07 -2.50 6.98 40.41 0.28 -2.21 16 19 C 0.01 0.20 11.55 84.18 0.97 1.17 16 20 N -0.30 -11.03 12.35 -57.50 -0.71 -11.74 16 21 N -0.08 -2.73 13.14 37.02 0.49 -2.24 16 22 N -0.25 -8.20 3.79 -356.78 -1.35 -9.55 16 23 C 0.07 1.60 11.03 127.77 1.41 3.01 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 2.07 8.03 -2.39 -0.02 2.06 16 28 H 0.08 2.20 7.86 -2.39 -0.02 2.18 16 29 H 0.00 -0.27 7.33 -2.39 -0.02 -0.29 16 30 H 0.01 0.67 7.36 -2.39 -0.02 0.65 16 31 H 0.03 1.20 7.83 -2.39 -0.02 1.18 16 32 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 33 H 0.41 13.58 6.43 -92.71 -0.60 12.98 16 34 H 0.22 6.26 7.56 -2.92 -0.02 6.24 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.10 2.80 6.26 -2.39 -0.01 2.79 16 Total: -1.00 -66.99 312.84 3.94 -63.05 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.49 Total: 17.64 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 6.87 Total: 27.83 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -5.39 Total: -129.65 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -66.99 3.94 -63.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322145891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.660 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds