Wall clock time and date at job start Mon Mar 30 2020 00:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47047 * 299.99945 * 3 2 1 6 6 H 1.48509 * 109.46791 * 59.99938 * 3 2 1 7 7 C 1.37874 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47765 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47643 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99425 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00458 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00096 * 175.56320 * 13 11 10 15 15 C 1.53000 * 109.54160 * 294.00455 * 14 13 11 16 16 C 1.52997 * 117.50052 * 2.18538 * 15 14 13 17 17 C 1.52997 * 117.50120 * 293.52482 * 15 14 13 18 18 C 1.53177 * 109.53983 * 173.73877 * 14 13 11 19 19 C 1.53085 * 109.16597 * 297.11240 * 18 14 13 20 20 O 1.42905 * 109.41658 * 302.39409 * 19 18 14 21 21 C 1.42905 * 114.09552 * 61.15781 * 20 19 18 22 22 C 1.53095 * 109.41142 * 298.84022 * 21 20 19 23 23 H 0.97002 * 120.00484 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46977 * 59.99290 * 9 7 2 25 25 H 1.09005 * 109.47108 * 300.00218 * 9 7 2 26 26 H 1.08997 * 109.47333 * 300.00137 * 10 9 7 27 27 H 1.09001 * 109.47240 * 59.99712 * 10 9 7 28 28 H 0.97007 * 119.99636 * 355.56641 * 13 11 10 29 29 H 1.08997 * 115.54850 * 147.84959 * 15 14 13 30 30 H 1.09001 * 117.49887 * 359.97438 * 16 15 14 31 31 H 1.08998 * 117.50497 * 145.02105 * 16 15 14 32 32 H 1.08999 * 117.49753 * 214.98290 * 17 15 14 33 33 H 1.09003 * 117.49793 * 359.97438 * 17 15 14 34 34 H 1.09002 * 109.52145 * 57.02351 * 18 14 13 35 35 H 1.09006 * 109.52083 * 177.20364 * 18 14 13 36 36 H 1.09007 * 109.48118 * 182.40994 * 19 18 14 37 37 H 1.09000 * 109.47839 * 62.37946 * 19 18 14 38 38 H 1.09002 * 109.47495 * 178.86265 * 21 20 19 39 39 H 1.08994 * 109.48960 * 58.83344 * 21 20 19 40 40 H 1.08997 * 109.52505 * 297.70111 * 22 21 20 41 41 H 1.09005 * 109.56929 * 177.54637 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1657 -6.1344 0.0008 14 6 1.4366 -7.4012 0.0995 15 6 0.7639 -7.4990 1.4702 16 6 0.9155 -6.3077 2.4182 17 6 1.6719 -7.6090 2.6966 18 6 2.4117 -8.5689 -0.0793 19 6 3.0206 -8.5049 -1.4824 20 8 1.9750 -8.5389 -2.4559 21 6 1.0595 -7.4452 -2.3674 22 6 0.3719 -7.4667 -0.9997 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8905 28 1 3.1335 -6.1356 -0.0649 29 1 -0.1804 -8.0430 1.4927 30 1 1.4949 -5.4545 2.0655 31 1 0.0712 -6.0683 3.0647 32 1 1.3250 -8.2252 3.5261 33 1 2.7487 -7.6121 2.5270 34 1 3.2046 -8.4986 0.6655 35 1 1.8779 -9.5113 0.0436 36 1 3.6830 -9.3578 -1.6304 37 1 3.5881 -7.5806 -1.5905 38 1 0.3092 -7.5348 -3.1529 39 1 1.6012 -6.5070 -2.4872 40 1 -0.2032 -8.3868 -0.8956 41 1 -0.2948 -6.6087 -0.9127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324282820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:20 Heat of formation + Delta-G solvation = -63.514666 kcal Electronic energy + Delta-G solvation = -21542.137537 eV Core-core repulsion = 18422.679654 eV Total energy + Delta-G solvation = -3119.457882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89138 -38.34282 -36.90714 -33.95734 -33.46408 -31.77424 -31.20427 -30.49866 -26.05919 -25.17056 -23.90169 -22.07683 -22.02741 -21.03885 -19.84780 -19.05820 -17.08571 -16.64666 -16.04225 -15.91750 -15.54811 -15.38257 -14.83183 -14.47728 -14.32261 -13.48336 -13.47467 -13.19120 -12.74873 -12.45060 -12.22202 -12.10051 -11.81329 -11.42210 -11.18042 -11.16671 -11.01085 -10.95019 -10.59211 -10.49754 -10.21068 -9.98753 -9.95113 -9.69297 -9.56857 -9.11766 -8.80738 -8.73793 -8.33625 -5.97690 -4.01966 3.22848 3.31388 3.38339 3.41234 3.48189 3.82436 3.87705 4.46384 4.55382 4.65702 4.76159 4.92681 5.07587 5.08594 5.25909 5.28488 5.37354 5.37609 5.44351 5.57647 5.62156 5.67579 5.77540 5.82351 5.96496 6.04898 6.09992 6.15688 6.19380 6.21087 6.32125 6.40647 6.83214 6.87419 7.15622 7.73060 7.84501 7.90099 8.05405 8.37596 8.80264 9.06914 9.61871 11.13193 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.004743 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.120503 B = 5902.036134 C = 6329.025823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.133 4.133 11 C 0.513 3.487 12 O -0.521 6.521 13 N -0.740 5.740 14 C 0.210 3.790 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.183 4.183 18 C -0.153 4.153 19 C 0.061 3.939 20 O -0.386 6.386 21 C 0.064 3.936 22 C -0.169 4.169 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.394 0.606 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -18.594 0.682 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.173 4.173 11 C 0.303 3.697 12 O -0.395 6.395 13 N -0.395 5.395 14 C 0.124 3.876 15 C -0.171 4.171 16 C -0.194 4.194 17 C -0.220 4.220 18 C -0.191 4.191 19 C -0.016 4.016 20 O -0.305 6.305 21 C -0.012 4.012 22 C -0.207 4.207 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.228 0.772 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.034 -18.601 0.553 19.278 hybrid contribution 0.912 1.137 0.312 1.490 sum 5.945 -17.465 0.865 18.469 Atomic orbital electron populations 1.70002 1.06038 1.26465 1.50299 1.25011 0.94804 0.99197 0.95297 0.86557 0.80020 0.83914 0.77605 1.19774 1.21005 1.21013 1.21257 0.92926 0.91057 1.51262 0.92659 1.18874 0.93087 0.89300 0.98578 1.21909 1.00779 0.92282 1.02319 1.21362 0.88807 0.85410 0.74156 1.90601 1.14203 1.87234 1.47512 1.46436 1.09917 1.05440 1.77680 1.19648 0.91520 0.83383 0.93072 1.22548 1.00292 1.04093 0.90199 1.23000 1.02553 0.92151 1.01739 1.22955 0.98003 1.01915 0.99132 1.22441 0.99660 0.98875 0.98109 1.22547 0.89751 1.01798 0.87523 1.87901 1.40326 1.47842 1.54396 1.22557 0.92035 0.89358 0.97261 1.22706 0.99154 1.04934 0.93945 0.93013 0.95863 0.95817 0.90497 0.90455 0.77217 0.87698 0.88218 0.89177 0.89303 0.89207 0.90359 0.89674 0.88988 0.93178 0.89008 0.92919 0.91119 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 11 C 0.51 9.11 4.87 -10.99 -0.05 9.05 16 12 O -0.52 -11.08 12.31 5.55 0.07 -11.01 16 13 N -0.74 -9.71 3.53 -47.44 -0.17 -9.88 16 14 C 0.21 2.55 0.49 -131.64 -0.06 2.49 16 15 C -0.15 -1.93 4.90 -90.62 -0.44 -2.37 16 16 C -0.16 -2.27 8.63 -26.70 -0.23 -2.50 16 17 C -0.18 -2.03 9.72 -26.70 -0.26 -2.29 16 18 C -0.15 -1.44 4.66 -26.60 -0.12 -1.56 16 19 C 0.06 0.59 6.67 37.20 0.25 0.84 16 20 O -0.39 -4.85 10.77 -35.23 -0.38 -5.23 16 21 C 0.06 0.84 6.68 37.21 0.25 1.08 16 22 C -0.17 -2.28 4.62 -26.59 -0.12 -2.40 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.39 4.22 7.75 -40.82 -0.32 3.90 16 29 H 0.10 1.31 8.06 -51.93 -0.42 0.89 16 30 H 0.10 1.64 5.22 -51.93 -0.27 1.36 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.91 7.26 -51.93 -0.38 0.53 16 34 H 0.08 0.62 7.07 -51.93 -0.37 0.26 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 37 H 0.05 0.47 7.23 -51.93 -0.38 0.09 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.74 7.75 -51.93 -0.40 0.34 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 1.88 5.55 -51.93 -0.29 1.59 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -32.27 319.74 -8.01 -40.29 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.58 Total: 3.96 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.49 Total: -13.01 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.57 Total: -36.36 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.31 Total: -16.24 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.27 -8.01 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324282820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.228 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds