Wall clock time and date at job start Mon Mar 30 2020 00:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47047 * 299.99945 * 3 2 1 6 6 H 1.48509 * 109.46791 * 59.99938 * 3 2 1 7 7 C 1.37874 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47765 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47643 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99425 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00458 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00096 * 175.56320 * 13 11 10 15 15 C 1.53000 * 109.54160 * 294.00455 * 14 13 11 16 16 C 1.52997 * 117.50052 * 2.18538 * 15 14 13 17 17 C 1.52997 * 117.50120 * 293.52482 * 15 14 13 18 18 C 1.53177 * 109.53983 * 173.73877 * 14 13 11 19 19 C 1.53085 * 109.16597 * 297.11240 * 18 14 13 20 20 O 1.42905 * 109.41658 * 302.39409 * 19 18 14 21 21 C 1.42905 * 114.09552 * 61.15781 * 20 19 18 22 22 C 1.53095 * 109.41142 * 298.84022 * 21 20 19 23 23 H 0.97002 * 120.00484 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46977 * 59.99290 * 9 7 2 25 25 H 1.09005 * 109.47108 * 300.00218 * 9 7 2 26 26 H 1.08997 * 109.47333 * 300.00137 * 10 9 7 27 27 H 1.09001 * 109.47240 * 59.99712 * 10 9 7 28 28 H 0.97007 * 119.99636 * 355.56641 * 13 11 10 29 29 H 1.08997 * 115.54850 * 147.84959 * 15 14 13 30 30 H 1.09001 * 117.49887 * 359.97438 * 16 15 14 31 31 H 1.08998 * 117.50497 * 145.02105 * 16 15 14 32 32 H 1.08999 * 117.49753 * 214.98290 * 17 15 14 33 33 H 1.09003 * 117.49793 * 359.97438 * 17 15 14 34 34 H 1.09002 * 109.52145 * 57.02351 * 18 14 13 35 35 H 1.09006 * 109.52083 * 177.20364 * 18 14 13 36 36 H 1.09007 * 109.48118 * 182.40994 * 19 18 14 37 37 H 1.09000 * 109.47839 * 62.37946 * 19 18 14 38 38 H 1.09002 * 109.47495 * 178.86265 * 21 20 19 39 39 H 1.08994 * 109.48960 * 58.83344 * 21 20 19 40 40 H 1.08997 * 109.52505 * 297.70111 * 22 21 20 41 41 H 1.09005 * 109.56929 * 177.54637 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1657 -6.1344 0.0008 14 6 1.4366 -7.4012 0.0995 15 6 0.7639 -7.4990 1.4702 16 6 0.9155 -6.3077 2.4182 17 6 1.6719 -7.6090 2.6966 18 6 2.4117 -8.5689 -0.0793 19 6 3.0206 -8.5049 -1.4824 20 8 1.9750 -8.5389 -2.4559 21 6 1.0595 -7.4452 -2.3674 22 6 0.3719 -7.4667 -0.9997 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8905 28 1 3.1335 -6.1356 -0.0649 29 1 -0.1804 -8.0430 1.4927 30 1 1.4949 -5.4545 2.0655 31 1 0.0712 -6.0683 3.0647 32 1 1.3250 -8.2252 3.5261 33 1 2.7487 -7.6121 2.5270 34 1 3.2046 -8.4986 0.6655 35 1 1.8779 -9.5113 0.0436 36 1 3.6830 -9.3578 -1.6304 37 1 3.5881 -7.5806 -1.5905 38 1 0.3092 -7.5348 -3.1529 39 1 1.6012 -6.5070 -2.4872 40 1 -0.2032 -8.3868 -0.8956 41 1 -0.2948 -6.6087 -0.9127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324282820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:19 Heat of formation + Delta-G solvation = -85.037667 kcal Electronic energy + Delta-G solvation = -21543.070844 eV Core-core repulsion = 18422.679654 eV Total energy + Delta-G solvation = -3120.391190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.02687 -39.53992 -38.02115 -35.56674 -35.05169 -33.32566 -32.13028 -32.07765 -27.81180 -26.40369 -24.83167 -23.85041 -23.06921 -22.01664 -21.32888 -20.22001 -18.82757 -17.86389 -17.43185 -16.93624 -16.89796 -16.48679 -16.39863 -15.94612 -15.50968 -14.95487 -14.56809 -14.36874 -14.18950 -13.93805 -13.51348 -13.34962 -13.19090 -12.86751 -12.85130 -12.46236 -12.38129 -12.18425 -11.98055 -11.88980 -11.61648 -11.44706 -11.27115 -11.20662 -10.99492 -10.64376 -10.57649 -10.21777 -9.91388 -8.18729 -6.32398 1.41207 1.42241 1.55429 1.81036 2.25223 2.44079 2.86868 2.95819 3.14603 3.58990 3.73808 3.81250 4.02329 4.07852 4.13605 4.19561 4.24074 4.37747 4.48955 4.51736 4.54241 4.66847 4.73426 4.80202 4.82161 4.89202 5.02764 5.06267 5.11537 5.14475 5.18495 5.24874 5.26509 5.49385 5.64631 5.70140 5.86090 6.18187 6.24833 6.69967 6.86816 7.37759 7.46816 8.93917 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.004743 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.120503 B = 5902.036134 C = 6329.025823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.047 3.953 10 C -0.124 4.124 11 C 0.520 3.480 12 O -0.564 6.564 13 N -0.717 5.717 14 C 0.208 3.792 15 C -0.156 4.156 16 C -0.192 4.192 17 C -0.146 4.146 18 C -0.142 4.142 19 C 0.052 3.948 20 O -0.396 6.396 21 C 0.070 3.930 22 C -0.168 4.168 23 H 0.262 0.738 24 H -0.018 1.018 25 H -0.018 1.018 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.411 0.589 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.294 -20.142 1.004 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.010 3.990 10 C -0.163 4.163 11 C 0.308 3.692 12 O -0.442 6.442 13 N -0.371 5.371 14 C 0.122 3.878 15 C -0.176 4.176 16 C -0.229 4.229 17 C -0.183 4.183 18 C -0.180 4.180 19 C -0.024 4.024 20 O -0.315 6.315 21 C -0.007 4.007 22 C -0.207 4.207 23 H 0.071 0.929 24 H 0.000 1.000 25 H 0.000 1.000 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.247 0.753 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.282 -20.193 0.876 21.843 hybrid contribution -0.123 1.567 0.217 1.587 sum 8.159 -18.626 1.093 20.364 Atomic orbital electron populations 1.70176 1.08257 1.27679 1.51608 1.26094 0.95677 1.03812 0.94680 0.85316 0.79321 0.78304 0.77566 1.17694 1.20626 1.20642 1.21746 0.93884 0.91782 1.50579 0.90902 1.18624 0.93546 0.92243 0.94618 1.21664 0.99413 0.91025 1.04242 1.20934 0.88012 0.86186 0.74024 1.90611 1.16010 1.87837 1.49740 1.46108 1.10663 1.04557 1.75752 1.19814 0.91983 0.83643 0.92326 1.22606 1.01165 1.02870 0.90917 1.22896 1.03326 0.93071 1.03657 1.23058 0.98608 0.98399 0.98189 1.22418 0.99470 0.97366 0.98706 1.22841 0.89299 1.03342 0.86941 1.87895 1.40819 1.47230 1.55551 1.22417 0.92194 0.89078 0.96980 1.22624 0.99280 1.03717 0.95056 0.92903 0.99972 0.99952 0.88448 0.88431 0.75252 0.87841 0.90421 0.90825 0.87512 0.87191 0.87779 0.88675 0.86267 0.92724 0.88797 0.94381 0.90037 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.52 13.29 21.45 0.28 -59.23 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 4 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.05 2.61 4.26 29.84 0.13 2.74 16 10 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 11 C 0.52 18.85 4.87 87.66 0.43 19.28 16 12 O -0.56 -25.56 12.31 -3.04 -0.04 -25.60 16 13 N -0.72 -17.90 3.53 -422.39 -1.49 -19.39 16 14 C 0.21 4.73 0.49 3.72 0.00 4.73 16 15 C -0.16 -3.78 4.90 -10.80 -0.05 -3.83 16 16 C -0.19 -5.58 8.63 30.62 0.26 -5.32 16 17 C -0.15 -2.81 9.72 30.62 0.30 -2.51 16 18 C -0.14 -2.11 4.66 30.68 0.14 -1.97 16 19 C 0.05 0.82 6.67 72.01 0.48 1.30 16 20 O -0.40 -9.07 10.77 -148.98 -1.60 -10.68 16 21 C 0.07 1.79 6.68 72.01 0.48 2.27 16 22 C -0.17 -4.54 4.62 30.68 0.14 -4.39 16 23 H 0.26 15.58 8.31 -92.71 -0.77 14.80 16 24 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 25 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 26 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.41 7.60 7.75 -92.70 -0.72 6.89 16 29 H 0.10 2.52 8.06 -2.39 -0.02 2.50 16 30 H 0.08 2.60 5.22 -2.39 -0.01 2.59 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 1.70 7.26 -2.39 -0.02 1.69 16 34 H 0.10 1.08 7.07 -2.39 -0.02 1.06 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.05 0.82 7.23 -2.39 -0.02 0.80 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.04 1.07 7.75 -2.39 -0.02 1.05 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.66 5.55 -2.38 -0.01 2.65 16 Total: -1.00 -74.61 319.74 2.65 -71.95 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.30 Total: 19.38 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 3.17 Total: -22.85 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.21 Total: -78.63 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.64 Total: -36.27 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -74.61 2.65 -71.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324282820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.085 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds