Wall clock time and date at job start Mon Mar 30 2020 00:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47035 * 2 1 4 4 C 1.50707 * 109.47332 * 240.00446 * 2 1 3 5 5 N 1.31073 * 126.65439 * 285.02730 * 4 2 1 6 6 N 1.28839 * 107.98794 * 179.97438 * 5 4 2 7 7 N 1.28744 * 109.39875 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80455 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43604 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47437 * 120.00141 * 2 1 3 11 11 C 1.48532 * 110.99958 * 177.60679 * 10 2 1 12 12 C 1.54934 * 103.22908 * 159.72113 * 11 10 2 13 13 C 1.54601 * 102.91727 * 322.58609 * 12 11 10 14 14 O 1.42902 * 110.30597 * 263.03896 * 13 12 11 15 15 C 1.50700 * 110.31062 * 140.87546 * 13 12 11 16 16 H 1.08000 * 119.99518 * 244.28311 * 15 13 12 17 17 C 1.37874 * 120.00314 * 64.27478 * 15 13 12 18 18 N 1.31516 * 119.99921 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00292 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46650 * 60.00576 * 19 17 15 21 21 H 1.48499 * 109.47130 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47390 * 300.00804 * 19 17 15 23 23 C 1.47905 * 110.99596 * 295.00086 * 10 2 1 24 24 H 1.08995 * 109.47010 * 299.99806 * 1 2 3 25 25 H 1.09002 * 109.46854 * 60.00151 * 1 2 3 26 26 H 1.09003 * 109.46574 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47678 * 90.01913 * 9 8 7 28 28 H 1.09004 * 109.47433 * 210.02564 * 9 8 7 29 29 H 1.09010 * 109.47042 * 330.02023 * 9 8 7 30 30 H 1.09004 * 110.66360 * 278.15632 * 11 10 2 31 31 H 1.09003 * 110.66899 * 41.28438 * 11 10 2 32 32 H 1.08994 * 110.72556 * 204.22951 * 12 11 10 33 33 H 1.09003 * 110.87657 * 81.00624 * 12 11 10 34 34 H 0.96703 * 113.99962 * 295.71893 * 14 13 12 35 35 H 0.97003 * 120.00447 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.91618 * 333.50372 * 23 10 2 37 37 H 1.08999 * 109.91442 * 94.80595 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 2.0362 -2.0041 -1.4405 6 7 2.5435 -2.2167 -2.6056 7 7 2.8628 -1.0920 -3.1446 8 7 2.5634 -0.1394 -2.3276 9 6 2.7640 1.2944 -2.5518 10 7 2.0198 -0.6925 1.1994 11 6 3.5034 -0.7626 1.2050 12 6 3.8409 -1.0122 2.6964 13 6 2.7915 -0.1516 3.4369 14 8 3.3532 1.1111 3.8007 15 6 2.2913 -0.8748 4.6608 16 1 1.2555 -1.1734 4.7258 17 6 3.1561 -1.1555 5.6973 18 7 4.4174 -0.7916 5.6182 19 14 2.5359 -2.0514 7.2146 20 1 2.0038 -3.3808 6.8214 21 1 3.6538 -2.2296 8.1757 22 1 1.4569 -1.2554 7.8530 23 6 1.6462 0.0442 2.4263 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8776 1.7155 -3.0263 28 1 2.9355 1.7911 -1.5968 29 1 3.6282 1.4436 -3.1992 30 1 3.8517 -1.5909 0.5879 31 1 3.9344 0.1792 0.8654 32 1 4.8505 -0.6713 2.9257 33 1 3.7240 -2.0658 2.9501 34 1 4.0798 1.0500 4.4358 35 1 5.0258 -0.9887 6.3476 36 1 1.5267 1.1039 2.2012 37 1 0.7189 -0.3587 2.8335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326019057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:19 Heat of formation + Delta-G solvation = 55.158274 kcal Electronic energy + Delta-G solvation = -21255.809590 eV Core-core repulsion = 18070.250161 eV Total energy + Delta-G solvation = -3185.559430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.23080 -40.36856 -37.36540 -36.59680 -34.44881 -34.09592 -32.30723 -30.00245 -29.51348 -29.10114 -26.78970 -25.33267 -24.13006 -22.87614 -21.72492 -20.98198 -19.10494 -18.53577 -18.26797 -17.39922 -16.92763 -16.66999 -15.82910 -15.49361 -15.09306 -14.84603 -14.57241 -14.35654 -13.93172 -13.74318 -13.58721 -13.21602 -13.17674 -13.14363 -12.92582 -12.70949 -12.51231 -12.39260 -12.33296 -12.12176 -12.00923 -11.91923 -11.79582 -11.14138 -11.03108 -10.58462 -10.09768 -9.41708 -8.19962 -6.32401 0.16683 1.05897 1.16679 1.44267 1.45486 1.52460 2.41537 2.75790 2.86584 3.07465 3.38839 3.74507 3.82924 3.96507 4.19749 4.23884 4.25777 4.30170 4.31620 4.39414 4.54299 4.58910 4.67235 4.77264 4.80449 4.87852 5.08296 5.16059 5.21437 5.27632 5.38871 5.59842 5.77107 5.88608 6.07922 6.17089 6.72130 7.37302 7.45896 7.55572 8.85948 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.033237 B = 0.005047 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.226126 B = 5546.894466 C = 5590.817965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.156 3.844 3 H 0.092 0.908 4 C 0.198 3.802 5 N -0.310 5.310 6 N -0.116 5.116 7 N -0.105 5.105 8 N -0.296 5.296 9 C 0.060 3.940 10 N -0.506 5.506 11 C 0.048 3.952 12 C -0.110 4.110 13 C 0.230 3.770 14 O -0.598 6.598 15 C -0.552 4.552 16 H 0.058 0.942 17 C 0.028 3.972 18 N -0.917 5.917 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.070 3.930 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.378 0.622 35 H 0.268 0.732 36 H 0.056 0.944 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 8.535 -12.828 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.110 0.890 4 C -0.081 4.081 5 N -0.160 5.160 6 N -0.109 5.109 7 N -0.091 5.091 8 N -0.099 5.099 9 C -0.079 4.079 10 N -0.232 5.232 11 C -0.080 4.080 12 C -0.149 4.149 13 C 0.190 3.810 14 O -0.407 6.407 15 C -0.590 4.590 16 H 0.076 0.924 17 C -0.172 4.172 18 N -0.557 5.557 19 Si 0.782 3.218 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.057 4.057 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.229 0.771 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.565 7.087 -13.957 16.305 hybrid contribution 0.865 0.555 1.728 2.010 sum -3.700 7.641 -12.229 14.887 Atomic orbital electron populations 1.21835 0.89864 1.03565 1.04113 1.20485 0.98119 0.94166 0.82799 0.89020 1.26062 0.99020 0.89850 0.93213 1.75037 1.18003 1.13636 1.09304 1.78612 1.13257 1.16635 1.02442 1.78717 1.19236 0.92653 1.18542 1.48791 1.38647 1.11743 1.10764 1.23021 1.07787 0.69768 1.07340 1.64793 1.09817 1.47757 1.00798 1.23069 0.88188 0.98979 0.97717 1.22758 0.99294 0.99991 0.92824 1.19551 0.88939 0.80909 0.91624 1.86044 1.55390 1.32764 1.66494 1.21960 0.96485 1.37507 1.03036 0.92378 1.25660 0.94922 0.95626 1.00995 1.69681 1.04191 1.48064 1.33803 0.85640 0.77952 0.79039 0.79163 1.20200 1.20885 1.19574 1.22689 0.98432 0.96050 0.88495 0.89736 0.89449 0.92300 0.85312 0.86068 0.85761 0.92508 0.93678 0.93229 0.93998 0.77095 0.92243 0.92535 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.16 71.98 0.66 -2.25 16 2 C 0.16 4.03 2.17 44.17 0.10 4.12 16 3 H 0.09 1.85 6.67 -2.38 -0.02 1.83 16 4 C 0.20 5.57 5.81 138.14 0.80 6.37 16 5 N -0.31 -11.13 12.36 -50.45 -0.62 -11.76 16 6 N -0.12 -4.11 13.43 37.01 0.50 -3.61 16 7 N -0.11 -3.07 13.29 37.02 0.49 -2.58 16 8 N -0.30 -6.74 3.75 -359.63 -1.35 -8.09 16 9 C 0.06 0.56 11.21 127.77 1.43 1.99 16 10 N -0.51 -17.89 5.10 -862.21 -4.40 -22.29 16 11 C 0.05 1.84 5.71 86.65 0.50 2.33 16 12 C -0.11 -5.10 5.49 31.80 0.17 -4.93 16 13 C 0.23 10.90 0.99 -10.66 -0.01 10.88 16 14 O -0.60 -29.35 12.93 -148.98 -1.93 -31.28 16 15 C -0.55 -29.01 8.10 25.60 0.21 -28.80 16 16 H 0.06 3.03 7.34 -2.91 -0.02 3.01 16 17 C 0.03 1.45 5.26 84.65 0.45 1.90 16 18 N -0.92 -48.71 10.88 21.45 0.23 -48.48 16 19 Si 0.96 42.15 29.54 68.60 2.03 44.17 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 C 0.07 2.72 5.02 86.44 0.43 3.15 16 24 H 0.08 1.71 7.35 -2.39 -0.02 1.69 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.12 0.79 7.01 -2.39 -0.02 0.77 16 29 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 2.26 7.95 -2.39 -0.02 2.24 16 31 H 0.05 1.56 8.02 -2.39 -0.02 1.54 16 32 H 0.05 2.40 8.05 -2.39 -0.02 2.38 16 33 H 0.04 2.14 7.86 -2.39 -0.02 2.13 16 34 H 0.38 19.47 7.05 -74.06 -0.52 18.95 16 35 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 36 H 0.06 1.96 7.47 -2.39 -0.02 1.95 16 37 H 0.08 3.24 7.39 -2.39 -0.02 3.22 16 Total: -1.00 -66.67 304.56 0.26 -66.41 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.57 Total: 22.72 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.74 Total: -5.23 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -5.15 Total: -96.80 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.93 Total: -31.28 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -66.67 0.26 -66.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326019057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.569 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds