Wall clock time and date at job start Mon Mar 30 2020 00:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.50696 * 109.46941 * 120.00660 * 2 1 3 5 5 N 1.31071 * 126.66259 * 75.02534 * 4 2 1 6 6 N 1.28845 * 107.98838 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.39892 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80902 * 359.74527 * 7 6 5 9 9 C 1.46500 * 126.43913 * 180.24666 * 8 7 6 10 10 N 1.46900 * 109.46824 * 240.00301 * 2 1 3 11 11 C 1.48537 * 110.99942 * 59.14722 * 10 2 1 12 12 C 1.54947 * 103.22711 * 159.71732 * 11 10 2 13 13 C 1.54595 * 102.92023 * 322.58614 * 12 11 10 14 14 O 1.42892 * 110.30983 * 263.03962 * 13 12 11 15 15 C 1.50699 * 110.30756 * 140.87159 * 13 12 11 16 16 H 1.08004 * 120.00271 * 244.28199 * 15 13 12 17 17 C 1.37876 * 120.00076 * 64.28156 * 15 13 12 18 18 N 1.31514 * 119.99745 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00245 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47162 * 89.99973 * 19 17 15 21 21 H 1.48501 * 109.47468 * 210.00412 * 19 17 15 22 22 H 1.48507 * 109.47130 * 330.00273 * 19 17 15 23 23 C 1.47902 * 110.99845 * 176.53988 * 10 2 1 24 24 H 1.08993 * 109.47304 * 174.19630 * 1 2 3 25 25 H 1.09003 * 109.47287 * 294.20424 * 1 2 3 26 26 H 1.09000 * 109.47065 * 54.20013 * 1 2 3 27 27 H 1.08994 * 109.46993 * 270.18070 * 9 8 7 28 28 H 1.08997 * 109.46965 * 30.17784 * 9 8 7 29 29 H 1.08990 * 109.47115 * 150.17846 * 9 8 7 30 30 H 1.08996 * 110.66905 * 278.15065 * 11 10 2 31 31 H 1.08994 * 110.66792 * 41.28535 * 11 10 2 32 32 H 1.08997 * 110.72149 * 204.22840 * 12 11 10 33 33 H 1.08997 * 110.71822 * 80.94290 * 12 11 10 34 34 H 0.96705 * 114.00117 * 295.72024 * 14 13 12 35 35 H 0.97004 * 119.99953 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.92160 * 333.51253 * 23 10 2 37 37 H 1.09007 * 109.91593 * 94.80467 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.0370 -2.0044 1.4398 6 7 2.5448 -2.2171 2.6047 7 7 2.8647 -1.0925 3.1435 8 7 2.5695 -0.1400 2.3248 9 6 2.7762 1.2933 2.5464 10 7 2.0196 -0.6924 -1.1995 11 6 1.5265 -0.0308 -2.4346 12 6 2.5174 -0.5221 -3.5197 13 6 3.8678 -0.5498 -2.7677 14 8 4.6027 0.6486 -3.0236 15 6 4.6717 -1.7558 -3.1804 16 1 4.9035 -2.5237 -2.4571 17 6 5.1113 -1.8790 -4.4814 18 7 4.8295 -0.9438 -5.3620 19 14 6.1084 -3.3736 -4.9928 20 1 5.1916 -4.4427 -5.4637 21 1 7.0359 -2.9981 -6.0901 22 1 6.8903 -3.8681 -3.8312 23 6 3.4957 -0.6404 -1.2761 24 1 -0.3633 -1.0223 -0.1039 25 1 -0.3634 0.4213 0.9373 26 1 -0.3633 0.6011 -0.8335 27 1 1.8930 1.7182 3.0232 28 1 3.6430 1.4400 3.1907 29 1 2.9463 1.7879 1.5902 30 1 0.5117 -0.3545 -2.6655 31 1 1.5722 1.0536 -2.3346 32 1 2.5546 0.1787 -4.3537 33 1 2.2476 -1.5202 -3.8649 34 1 4.8644 0.7598 -3.9479 35 1 5.1391 -1.0302 -6.2772 36 1 3.8643 0.2386 -0.7474 37 1 3.9222 -1.5445 -0.8412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326019059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:24 Heat of formation + Delta-G solvation = 79.732081 kcal Electronic energy + Delta-G solvation = -21345.583897 eV Core-core repulsion = 18161.090067 eV Total energy + Delta-G solvation = -3184.493829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.00390 -38.80931 -35.85464 -35.39594 -32.99809 -32.10032 -30.87932 -28.68462 -28.40496 -27.70797 -24.50367 -24.40892 -23.08933 -21.44472 -20.04556 -19.45785 -17.51038 -17.18570 -17.08439 -15.76311 -15.47143 -14.88919 -14.51176 -14.10101 -13.86650 -13.80417 -13.23652 -12.88773 -12.59249 -12.44500 -12.13956 -12.05482 -11.80052 -11.48464 -11.29958 -11.13824 -11.03097 -10.83136 -10.74451 -10.71312 -10.49994 -10.44023 -9.99313 -9.81308 -9.23885 -8.60884 -8.17132 -7.99457 -6.21956 -4.27286 1.34283 2.03153 2.47411 3.25487 3.32088 3.37672 3.94850 4.08420 4.32545 4.36380 4.65445 4.77940 4.99977 5.02204 5.07670 5.24577 5.45564 5.54753 5.64062 5.71680 5.85953 5.88764 5.96495 6.09457 6.12407 6.21997 6.27020 6.39584 6.85856 6.94953 7.16463 7.40295 7.51432 7.56795 7.81688 8.12507 8.74734 8.81255 9.38283 9.47496 10.85898 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.005908 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.109949 B = 4738.164461 C = 5177.257872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.156 3.844 3 H 0.061 0.939 4 C 0.200 3.800 5 N -0.271 5.271 6 N -0.081 5.081 7 N -0.106 5.106 8 N -0.313 5.313 9 C 0.079 3.921 10 N -0.494 5.494 11 C 0.034 3.966 12 C -0.118 4.118 13 C 0.246 3.754 14 O -0.597 6.597 15 C -0.527 4.527 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.057 3.943 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.385 0.615 35 H 0.267 0.733 36 H 0.029 0.971 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 8.255 9.390 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.043 3.957 3 H 0.078 0.922 4 C -0.078 4.078 5 N -0.120 5.120 6 N -0.075 5.075 7 N -0.092 5.092 8 N -0.116 5.116 9 C -0.063 4.063 10 N -0.219 5.219 11 C -0.093 4.093 12 C -0.157 4.157 13 C 0.206 3.794 14 O -0.407 6.407 15 C -0.566 4.566 16 H 0.080 0.920 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.071 4.071 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.237 0.763 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.533 6.676 10.675 14.672 hybrid contribution 0.905 0.910 -1.317 1.839 sum -6.628 7.586 9.358 13.750 Atomic orbital electron populations 1.21834 0.91730 1.04328 1.01881 1.20234 0.96481 0.93405 0.85532 0.92182 1.26017 0.98872 0.90452 0.92485 1.75121 1.16782 1.11396 1.08659 1.78635 1.11609 1.15303 1.01987 1.78812 1.19650 0.92514 1.18176 1.48409 1.40662 1.10225 1.12270 1.22366 1.05223 0.73194 1.05540 1.64877 1.08743 1.48811 0.99514 1.23358 0.99764 0.95690 0.90482 1.23009 0.95441 1.01237 0.96000 1.19302 0.88320 0.84057 0.87751 1.86056 1.76483 1.43654 1.34492 1.21688 1.33859 1.05512 0.95513 0.91963 1.24989 0.95403 0.96635 0.96210 1.69605 1.46505 1.33926 1.04147 0.86450 0.79938 0.82596 0.78220 1.20393 1.21142 1.19795 1.22892 0.85529 0.99716 0.98930 0.90231 0.92552 0.90797 0.88582 0.87504 0.87803 0.90884 0.94527 0.91351 0.91024 0.76294 0.92318 0.95308 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.86 37.16 0.33 -1.28 16 2 C 0.16 2.25 2.15 -68.87 -0.15 2.10 16 3 H 0.06 0.75 6.69 -51.93 -0.35 0.41 16 4 C 0.20 3.18 6.15 -155.43 -0.96 2.22 16 5 N -0.27 -5.17 12.36 32.70 0.40 -4.77 16 6 N -0.08 -1.53 13.43 60.35 0.81 -0.72 16 7 N -0.11 -1.73 13.29 60.35 0.80 -0.93 16 8 N -0.31 -4.27 3.75 -65.03 -0.24 -4.52 16 9 C 0.08 0.60 11.21 59.85 0.67 1.27 16 10 N -0.49 -9.10 5.10 -223.88 -1.14 -10.24 16 11 C 0.03 0.60 5.40 -1.89 -0.01 0.59 16 12 C -0.12 -2.61 5.49 -24.87 -0.14 -2.75 16 13 C 0.25 5.99 0.99 -90.41 -0.09 5.90 16 14 O -0.60 -15.03 12.93 -35.23 -0.46 -15.49 16 15 C -0.53 -14.30 8.10 -34.44 -0.28 -14.58 16 16 H 0.06 1.74 7.34 -52.48 -0.39 1.35 16 17 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 18 N -0.90 -23.76 10.88 55.43 0.60 -23.16 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.06 1.23 5.43 -2.75 -0.01 1.21 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.75 7.23 -51.93 -0.38 0.37 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.68 7.01 -51.93 -0.36 0.32 16 30 H 0.07 1.14 7.79 -51.93 -0.40 0.73 16 31 H 0.04 0.60 8.01 -51.93 -0.42 0.18 16 32 H 0.07 1.55 8.05 -51.93 -0.42 1.13 16 33 H 0.07 1.71 7.86 -51.93 -0.41 1.30 16 34 H 0.39 9.91 7.05 45.56 0.32 10.23 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 37 H 0.08 1.90 7.39 -51.92 -0.38 1.51 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -31.16 304.44 -4.78 -35.94 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.40 Total: 6.84 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.73 Total: -3.58 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 1.23 Total: -44.33 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.46 Total: -15.49 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.16 -4.78 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326019059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.669 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds