Wall clock time and date at job start Mon Mar 30 2020 00:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.50696 * 109.46941 * 120.00660 * 2 1 3 5 5 N 1.31071 * 126.66259 * 75.02534 * 4 2 1 6 6 N 1.28845 * 107.98838 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.39892 * 359.97438 * 6 5 4 8 8 N 1.29019 * 108.80902 * 359.74527 * 7 6 5 9 9 C 1.46500 * 126.43913 * 180.24666 * 8 7 6 10 10 N 1.46900 * 109.46824 * 240.00301 * 2 1 3 11 11 C 1.48537 * 110.99942 * 59.14722 * 10 2 1 12 12 C 1.54947 * 103.22711 * 159.71732 * 11 10 2 13 13 C 1.54595 * 102.92023 * 322.58614 * 12 11 10 14 14 O 1.42892 * 110.30983 * 263.03962 * 13 12 11 15 15 C 1.50699 * 110.30756 * 140.87159 * 13 12 11 16 16 H 1.08004 * 120.00271 * 244.28199 * 15 13 12 17 17 C 1.37876 * 120.00076 * 64.28156 * 15 13 12 18 18 N 1.31514 * 119.99745 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00245 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47162 * 89.99973 * 19 17 15 21 21 H 1.48501 * 109.47468 * 210.00412 * 19 17 15 22 22 H 1.48507 * 109.47130 * 330.00273 * 19 17 15 23 23 C 1.47902 * 110.99845 * 176.53988 * 10 2 1 24 24 H 1.08993 * 109.47304 * 174.19630 * 1 2 3 25 25 H 1.09003 * 109.47287 * 294.20424 * 1 2 3 26 26 H 1.09000 * 109.47065 * 54.20013 * 1 2 3 27 27 H 1.08994 * 109.46993 * 270.18070 * 9 8 7 28 28 H 1.08997 * 109.46965 * 30.17784 * 9 8 7 29 29 H 1.08990 * 109.47115 * 150.17846 * 9 8 7 30 30 H 1.08996 * 110.66905 * 278.15065 * 11 10 2 31 31 H 1.08994 * 110.66792 * 41.28535 * 11 10 2 32 32 H 1.08997 * 110.72149 * 204.22840 * 12 11 10 33 33 H 1.08997 * 110.71822 * 80.94290 * 12 11 10 34 34 H 0.96705 * 114.00117 * 295.72024 * 14 13 12 35 35 H 0.97004 * 119.99953 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.92160 * 333.51253 * 23 10 2 37 37 H 1.09007 * 109.91593 * 94.80467 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.0370 -2.0044 1.4398 6 7 2.5448 -2.2171 2.6047 7 7 2.8647 -1.0925 3.1435 8 7 2.5695 -0.1400 2.3248 9 6 2.7762 1.2933 2.5464 10 7 2.0196 -0.6924 -1.1995 11 6 1.5265 -0.0308 -2.4346 12 6 2.5174 -0.5221 -3.5197 13 6 3.8678 -0.5498 -2.7677 14 8 4.6027 0.6486 -3.0236 15 6 4.6717 -1.7558 -3.1804 16 1 4.9035 -2.5237 -2.4571 17 6 5.1113 -1.8790 -4.4814 18 7 4.8295 -0.9438 -5.3620 19 14 6.1084 -3.3736 -4.9928 20 1 5.1916 -4.4427 -5.4637 21 1 7.0359 -2.9981 -6.0901 22 1 6.8903 -3.8681 -3.8312 23 6 3.4957 -0.6404 -1.2761 24 1 -0.3633 -1.0223 -0.1039 25 1 -0.3634 0.4213 0.9373 26 1 -0.3633 0.6011 -0.8335 27 1 1.8930 1.7182 3.0232 28 1 3.6430 1.4400 3.1907 29 1 2.9463 1.7879 1.5902 30 1 0.5117 -0.3545 -2.6655 31 1 1.5722 1.0536 -2.3346 32 1 2.5546 0.1787 -4.3537 33 1 2.2476 -1.5202 -3.8649 34 1 4.8644 0.7598 -3.9479 35 1 5.1391 -1.0302 -6.2772 36 1 3.8643 0.2386 -0.7474 37 1 3.9222 -1.5445 -0.8412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326019059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:23 Heat of formation + Delta-G solvation = 53.989155 kcal Electronic energy + Delta-G solvation = -21346.700194 eV Core-core repulsion = 18161.090067 eV Total energy + Delta-G solvation = -3185.610127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.21145 -40.36753 -37.39405 -36.59308 -34.45825 -34.14684 -32.15691 -30.17708 -29.52707 -29.16808 -26.32312 -25.64934 -24.26995 -22.78152 -21.43765 -21.22608 -19.15922 -18.51878 -18.27225 -17.20338 -16.95545 -16.62509 -16.09776 -15.78043 -15.08716 -14.60023 -14.48750 -14.16825 -14.09588 -13.82142 -13.66114 -13.30371 -13.18314 -13.07451 -12.83278 -12.62528 -12.51620 -12.44326 -12.33902 -12.16424 -12.08063 -11.87242 -11.79498 -11.12000 -11.05098 -10.63405 -10.11044 -9.40672 -8.25024 -6.37138 0.17909 1.07454 1.19185 1.36970 1.39473 1.48747 2.36996 2.77764 2.88093 3.02863 3.39568 3.74186 3.86980 3.93813 4.18996 4.26113 4.27697 4.31880 4.36497 4.43554 4.51279 4.54040 4.71674 4.78128 4.85244 4.90254 5.06303 5.19544 5.23313 5.30518 5.39727 5.62452 5.74618 5.92576 6.06530 6.15985 6.65391 7.32836 7.43668 7.56451 8.80758 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.005908 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.109949 B = 4738.164461 C = 5177.257872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.155 3.845 3 H 0.092 0.908 4 C 0.196 3.804 5 N -0.311 5.311 6 N -0.117 5.117 7 N -0.107 5.107 8 N -0.299 5.299 9 C 0.060 3.940 10 N -0.508 5.508 11 C 0.048 3.952 12 C -0.113 4.113 13 C 0.231 3.769 14 O -0.599 6.599 15 C -0.558 4.558 16 H 0.040 0.960 17 C 0.035 3.965 18 N -0.909 5.909 19 Si 0.952 3.048 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.281 1.281 23 C 0.073 3.927 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.380 0.620 35 H 0.271 0.729 36 H 0.035 0.965 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 10.277 9.765 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.083 4.083 5 N -0.160 5.160 6 N -0.111 5.111 7 N -0.094 5.094 8 N -0.102 5.102 9 C -0.078 4.078 10 N -0.234 5.234 11 C -0.078 4.078 12 C -0.151 4.151 13 C 0.191 3.809 14 O -0.409 6.409 15 C -0.596 4.596 16 H 0.058 0.942 17 C -0.166 4.166 18 N -0.549 5.549 19 Si 0.778 3.222 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.206 1.206 23 C -0.055 4.055 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.709 8.728 11.059 16.562 hybrid contribution 1.301 0.363 -1.400 1.946 sum -7.407 9.090 9.658 15.192 Atomic orbital electron populations 1.21850 0.89159 1.03893 1.04290 1.20510 0.98332 0.93958 0.82857 0.89096 1.26226 0.98805 0.89866 0.93400 1.75008 1.18107 1.13748 1.09178 1.78593 1.13323 1.16650 1.02533 1.78693 1.19333 0.92697 1.18651 1.48796 1.38628 1.11758 1.10993 1.23003 1.07747 0.69843 1.07251 1.64747 1.06340 1.50817 1.01531 1.23287 0.99525 0.96838 0.88167 1.22768 0.95712 0.99683 0.96983 1.19494 0.88851 0.82718 0.89842 1.86037 1.76867 1.43902 1.34059 1.21904 1.35469 1.06514 0.95728 0.94210 1.25553 0.96092 0.98823 0.96117 1.69650 1.46423 1.34525 1.04274 0.85660 0.78811 0.80046 0.77706 1.20040 1.19914 1.20630 1.22505 0.87976 0.98236 0.96772 0.92098 0.89893 0.88652 0.84983 0.86032 0.86228 0.88172 0.92178 0.92302 0.93720 0.76920 0.91944 0.94633 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.86 71.98 0.64 -1.93 16 2 C 0.16 4.00 2.15 44.17 0.09 4.10 16 3 H 0.09 1.84 6.69 -2.39 -0.02 1.82 16 4 C 0.20 5.91 6.15 138.13 0.85 6.76 16 5 N -0.31 -11.94 12.36 -50.45 -0.62 -12.56 16 6 N -0.12 -4.48 13.43 37.01 0.50 -3.98 16 7 N -0.11 -3.42 13.29 37.02 0.49 -2.93 16 8 N -0.30 -7.51 3.75 -359.67 -1.35 -8.86 16 9 C 0.06 0.69 11.21 127.77 1.43 2.12 16 10 N -0.51 -17.95 5.10 -862.22 -4.40 -22.35 16 11 C 0.05 1.58 5.40 86.65 0.47 2.05 16 12 C -0.11 -4.95 5.49 31.80 0.17 -4.77 16 13 C 0.23 11.34 0.99 -10.66 -0.01 11.33 16 14 O -0.60 -30.14 12.93 -148.98 -1.93 -32.06 16 15 C -0.56 -31.12 8.10 25.60 0.21 -30.91 16 16 H 0.04 2.33 7.34 -2.91 -0.02 2.31 16 17 C 0.03 1.86 5.26 84.65 0.45 2.31 16 18 N -0.91 -48.04 10.88 21.45 0.23 -47.81 16 19 Si 0.95 43.63 29.54 68.60 2.03 45.65 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 C 0.07 3.17 5.43 86.45 0.47 3.64 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.44 7.23 -2.39 -0.02 1.43 16 27 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.12 1.04 7.01 -2.39 -0.02 1.02 16 30 H 0.10 2.76 7.79 -2.39 -0.02 2.74 16 31 H 0.06 1.71 8.01 -2.39 -0.02 1.69 16 32 H 0.06 2.65 8.05 -2.39 -0.02 2.63 16 33 H 0.04 2.16 7.86 -2.39 -0.02 2.14 16 34 H 0.38 19.66 7.05 -74.05 -0.52 19.13 16 35 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.04 1.45 7.50 -2.39 -0.02 1.43 16 37 H 0.04 2.22 7.39 -2.38 -0.02 2.20 16 Total: -1.00 -70.31 304.44 0.29 -70.01 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.57 Total: 20.21 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.77 Total: -5.32 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -5.15 Total: -98.49 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.93 Total: -32.06 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.31 0.29 -70.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326019059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.003 kcal (2) G-P(sol) polarization free energy of solvation -70.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds