Wall clock time and date at job start Mon Mar 30 2020 00:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99887 * 2 1 4 4 C 1.50701 * 109.47017 * 270.00095 * 3 2 1 5 5 C 1.35351 * 126.74701 * 94.95149 * 4 3 2 6 6 N 1.35322 * 106.16806 * 180.02562 * 5 4 3 7 7 C 1.46502 * 125.86299 * 180.26356 * 6 5 4 8 8 N 1.28714 * 108.26464 * 0.02562 * 6 5 4 9 9 N 1.28629 * 110.17964 * 359.97438 * 8 6 5 10 10 C 1.34776 * 120.00190 * 180.02562 * 2 1 3 11 11 O 1.21587 * 120.00139 * 180.02562 * 10 2 1 12 12 N 1.34772 * 119.99940 * 359.97438 * 10 2 1 13 13 C 1.46496 * 120.00200 * 179.97438 * 12 10 2 14 14 C 1.53001 * 109.47504 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47539 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99629 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00367 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99667 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47041 * 60.00034 * 19 17 15 21 21 H 1.48496 * 109.47022 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47105 * 299.99950 * 19 17 15 23 23 H 1.08993 * 109.47262 * 90.00100 * 1 2 3 24 24 H 1.08997 * 109.47056 * 209.99849 * 1 2 3 25 25 H 1.09003 * 109.47249 * 329.99562 * 1 2 3 26 26 H 1.08999 * 109.47136 * 149.99842 * 3 2 1 27 27 H 1.09001 * 109.46941 * 29.99922 * 3 2 1 28 28 H 1.07991 * 126.91591 * 0.05646 * 5 4 3 29 29 H 1.08997 * 109.47250 * 269.71379 * 7 6 5 30 30 H 1.09003 * 109.47080 * 29.71873 * 7 6 5 31 31 H 1.09006 * 109.46804 * 149.71734 * 7 6 5 32 32 H 0.97003 * 120.00030 * 0.02562 * 12 10 2 33 33 H 1.08994 * 109.47514 * 300.00359 * 13 12 10 34 34 H 1.08996 * 109.46892 * 60.00474 * 13 12 10 35 35 H 1.09003 * 109.46736 * 300.00181 * 14 13 12 36 36 H 1.09001 * 109.46937 * 59.99652 * 14 13 12 37 37 H 0.97000 * 119.99383 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6920 2.5542 -2.1531 6 7 2.2938 2.6490 -3.3614 7 6 1.8343 3.4660 -4.4874 8 7 3.3420 1.9021 -3.3497 9 7 3.4627 1.3247 -2.2066 10 6 2.1389 -1.1672 -0.0005 11 8 3.3548 -1.1672 -0.0001 12 7 1.4651 -2.3343 -0.0005 13 6 2.1976 -3.6030 -0.0017 14 6 1.2034 -4.7660 -0.0021 15 6 1.9568 -6.0711 -0.0026 16 1 3.0369 -6.0711 -0.0031 17 6 1.2675 -7.2652 -0.0025 18 7 -0.0477 -7.2652 -0.0024 19 14 2.2015 -8.8829 -0.0039 20 1 3.0562 -8.9620 1.2079 21 1 1.2366 -10.0116 -0.0041 22 1 3.0543 -8.9611 -1.2171 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 3.1499 1.1385 0.5138 27 1 1.6084 2.0284 0.5138 28 1 0.7898 3.0564 -1.8366 29 1 1.1613 2.8784 -5.1117 30 1 1.3074 4.3421 -4.1094 31 1 2.6926 3.7852 -5.0787 32 1 0.4951 -2.3344 -0.0005 33 1 2.8236 -3.6604 -0.8920 34 1 2.8248 -3.6612 0.8878 35 1 0.5771 -4.7088 0.8882 36 1 0.5764 -4.7077 -0.8917 37 1 -0.5326 -8.1053 -0.0027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328414183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:08 Heat of formation + Delta-G solvation = 76.199164 kcal Electronic energy + Delta-G solvation = -19827.117536 eV Core-core repulsion = 16642.470507 eV Total energy + Delta-G solvation = -3184.647028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.31484 -39.65746 -35.86653 -34.66914 -34.63207 -32.82599 -31.69025 -29.48103 -28.39179 -27.42189 -25.97864 -24.25782 -22.19681 -21.64011 -20.85692 -19.56100 -17.70247 -17.43484 -16.79954 -16.36311 -15.78559 -15.65187 -14.93174 -14.47232 -14.18320 -13.91226 -13.59535 -13.46112 -13.39800 -13.02514 -12.65153 -12.51055 -12.21132 -12.12552 -11.61207 -11.09577 -10.96035 -10.75647 -10.59154 -10.23265 -10.19382 -9.79108 -9.52713 -9.33117 -9.17094 -8.68258 -8.41300 -8.13309 -6.03908 -4.05962 1.43898 2.19050 2.35821 3.21134 3.36121 3.39066 3.43680 3.69227 4.12294 4.31423 4.39530 4.53282 4.59700 4.70026 4.86804 4.90809 5.06264 5.20925 5.33172 5.39108 5.61286 5.64490 5.78959 6.02014 6.35288 6.40288 6.50349 6.62760 6.87081 7.12372 7.21782 7.62635 7.70415 7.95892 8.32316 8.47279 8.49278 8.99129 9.12157 9.58382 11.07867 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.003393 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.208726 B = 8249.272572 C = 8448.947581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.636 5.636 3 C 0.220 3.780 4 C -0.034 4.034 5 C -0.046 4.046 6 N -0.300 5.300 7 C 0.083 3.917 8 N -0.092 5.092 9 N -0.236 5.236 10 C 0.699 3.301 11 O -0.578 6.578 12 N -0.739 5.739 13 C 0.140 3.860 14 C 0.014 3.986 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.189 0.811 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.391 0.609 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 24.857 -4.123 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.375 5.375 3 C 0.094 3.906 4 C -0.174 4.174 5 C -0.198 4.198 6 N -0.093 5.093 7 C -0.059 4.059 8 N -0.071 5.071 9 N -0.102 5.102 10 C 0.400 3.600 11 O -0.455 6.455 12 N -0.394 5.394 13 C 0.017 3.983 14 C -0.023 4.023 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.206 0.794 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.226 0.774 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.364 24.190 -4.961 24.807 hybrid contribution -1.306 -0.399 0.251 1.389 sum -3.670 23.791 -4.710 24.529 Atomic orbital electron populations 1.21698 0.80108 1.03030 1.01402 1.47036 1.05984 1.04740 1.79730 1.19366 0.98915 0.84236 0.88101 1.22621 0.94623 1.00030 1.00142 1.23371 1.03124 1.06579 0.86690 1.47306 1.18377 1.31605 1.12015 1.22226 1.02244 0.94505 0.86918 1.78409 1.04800 1.06182 1.17740 1.75256 1.20768 1.17456 0.96765 1.16006 0.85529 0.80368 0.78097 1.90926 1.11361 1.85959 1.57230 1.45663 1.09817 1.05327 1.78622 1.21576 0.95622 0.80451 1.00676 1.19309 0.94254 0.91128 0.97655 1.21038 0.93289 0.90385 1.51096 0.92232 1.24994 0.94893 0.99372 0.95052 1.69953 1.06086 1.26879 1.50605 0.86566 0.79503 0.82619 0.78818 1.20088 1.21304 1.20104 0.93280 0.90999 0.91025 0.87961 0.88904 0.79442 0.89198 0.88454 0.88146 0.77411 0.92841 0.92761 0.96037 0.96116 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.25 59.85 0.61 1.39 16 2 N -0.64 -8.84 2.86 -188.74 -0.54 -9.38 16 3 C 0.22 2.63 6.01 -5.19 -0.03 2.60 16 4 C -0.03 -0.45 6.83 -82.78 -0.57 -1.02 16 5 C -0.05 -0.42 11.55 -17.04 -0.20 -0.62 16 6 N -0.30 -3.05 3.74 -68.05 -0.25 -3.30 16 7 C 0.08 0.36 11.39 59.85 0.68 1.04 16 8 N -0.09 -1.38 13.16 60.35 0.79 -0.59 16 9 N -0.24 -4.10 12.41 33.29 0.41 -3.68 16 10 C 0.70 13.40 8.28 -86.92 -0.72 12.68 16 11 O -0.58 -13.47 15.92 5.29 0.08 -13.39 16 12 N -0.74 -14.21 5.42 -65.23 -0.35 -14.57 16 13 C 0.14 3.20 5.61 -4.04 -0.02 3.18 16 14 C 0.01 0.36 5.09 -27.88 -0.14 0.22 16 15 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 16 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.70 6.36 -51.93 -0.33 0.37 16 25 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 26 H 0.10 1.45 7.42 -51.93 -0.39 1.06 16 27 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 28 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.39 6.51 6.20 -40.82 -0.25 6.26 16 33 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -38.74 322.24 -5.21 -43.95 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.13 Total: -0.73 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.79 Total: 5.85 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.80 Total: -57.42 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -38.74 -5.21 -43.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328414183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.150 kcal (2) G-P(sol) polarization free energy of solvation -38.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds