Wall clock time and date at job start Mon Mar 30 2020 00:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99887 * 2 1 4 4 C 1.50701 * 109.47017 * 270.00095 * 3 2 1 5 5 C 1.35351 * 126.74701 * 94.95149 * 4 3 2 6 6 N 1.35322 * 106.16806 * 180.02562 * 5 4 3 7 7 C 1.46502 * 125.86299 * 180.26356 * 6 5 4 8 8 N 1.28714 * 108.26464 * 0.02562 * 6 5 4 9 9 N 1.28629 * 110.17964 * 359.97438 * 8 6 5 10 10 C 1.34776 * 120.00190 * 180.02562 * 2 1 3 11 11 O 1.21587 * 120.00139 * 180.02562 * 10 2 1 12 12 N 1.34772 * 119.99940 * 359.97438 * 10 2 1 13 13 C 1.46496 * 120.00200 * 179.97438 * 12 10 2 14 14 C 1.53001 * 109.47504 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47539 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99629 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00367 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99667 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47041 * 60.00034 * 19 17 15 21 21 H 1.48496 * 109.47022 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47105 * 299.99950 * 19 17 15 23 23 H 1.08993 * 109.47262 * 90.00100 * 1 2 3 24 24 H 1.08997 * 109.47056 * 209.99849 * 1 2 3 25 25 H 1.09003 * 109.47249 * 329.99562 * 1 2 3 26 26 H 1.08999 * 109.47136 * 149.99842 * 3 2 1 27 27 H 1.09001 * 109.46941 * 29.99922 * 3 2 1 28 28 H 1.07991 * 126.91591 * 0.05646 * 5 4 3 29 29 H 1.08997 * 109.47250 * 269.71379 * 7 6 5 30 30 H 1.09003 * 109.47080 * 29.71873 * 7 6 5 31 31 H 1.09006 * 109.46804 * 149.71734 * 7 6 5 32 32 H 0.97003 * 120.00030 * 0.02562 * 12 10 2 33 33 H 1.08994 * 109.47514 * 300.00359 * 13 12 10 34 34 H 1.08996 * 109.46892 * 60.00474 * 13 12 10 35 35 H 1.09003 * 109.46736 * 300.00181 * 14 13 12 36 36 H 1.09001 * 109.46937 * 59.99652 * 14 13 12 37 37 H 0.97000 * 119.99383 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6920 2.5542 -2.1531 6 7 2.2938 2.6490 -3.3614 7 6 1.8343 3.4660 -4.4874 8 7 3.3420 1.9021 -3.3497 9 7 3.4627 1.3247 -2.2066 10 6 2.1389 -1.1672 -0.0005 11 8 3.3548 -1.1672 -0.0001 12 7 1.4651 -2.3343 -0.0005 13 6 2.1976 -3.6030 -0.0017 14 6 1.2034 -4.7660 -0.0021 15 6 1.9568 -6.0711 -0.0026 16 1 3.0369 -6.0711 -0.0031 17 6 1.2675 -7.2652 -0.0025 18 7 -0.0477 -7.2652 -0.0024 19 14 2.2015 -8.8829 -0.0039 20 1 3.0562 -8.9620 1.2079 21 1 1.2366 -10.0116 -0.0041 22 1 3.0543 -8.9611 -1.2171 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 3.1499 1.1385 0.5138 27 1 1.6084 2.0284 0.5138 28 1 0.7898 3.0564 -1.8366 29 1 1.1613 2.8784 -5.1117 30 1 1.3074 4.3421 -4.1094 31 1 2.6926 3.7852 -5.0787 32 1 0.4951 -2.3344 -0.0005 33 1 2.8236 -3.6604 -0.8920 34 1 2.8248 -3.6612 0.8878 35 1 0.5771 -4.7088 0.8882 36 1 0.5764 -4.7077 -0.8917 37 1 -0.5326 -8.1053 -0.0027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328414183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:07 Heat of formation + Delta-G solvation = 45.871887 kcal Electronic energy + Delta-G solvation = -19828.432625 eV Core-core repulsion = 16642.470507 eV Total energy + Delta-G solvation = -3185.962118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.17151 -41.07169 -37.13322 -36.39887 -35.47837 -34.80004 -32.76057 -31.28992 -29.05315 -28.24098 -27.36901 -25.99235 -23.14941 -22.90619 -22.37753 -20.94984 -19.02858 -18.48309 -18.15577 -17.64070 -17.08440 -16.83728 -16.49982 -15.84375 -15.52024 -15.31438 -14.85085 -14.53439 -14.27079 -13.99694 -13.91864 -13.58526 -13.39041 -13.24890 -12.93777 -12.90139 -12.52907 -12.48297 -12.22976 -11.67506 -11.62631 -11.48899 -11.17605 -10.96745 -10.59917 -10.24283 -10.11700 -9.53781 -8.24222 -6.34523 0.68066 1.30363 1.41516 1.44294 1.52298 1.64601 2.02105 2.22825 2.41688 3.10159 3.16465 3.44672 3.79671 4.08468 4.16457 4.34362 4.35345 4.42927 4.50006 4.51164 4.64300 4.67712 4.79770 4.85107 4.93379 4.98101 5.16605 5.31604 5.52830 5.58186 5.61982 5.75105 5.78567 5.94962 6.17393 6.77532 7.05148 7.34464 7.58527 7.64664 8.87657 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.003393 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.208726 B = 8249.272572 C = 8448.947581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.625 5.625 3 C 0.218 3.782 4 C -0.065 4.065 5 C -0.011 4.011 6 N -0.292 5.292 7 C 0.070 3.930 8 N -0.139 5.139 9 N -0.305 5.305 10 C 0.692 3.308 11 O -0.629 6.629 12 N -0.735 5.735 13 C 0.161 3.839 14 C 0.028 3.972 15 C -0.550 4.550 16 H 0.056 0.944 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.271 1.271 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.153 0.847 28 H 0.248 0.752 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.405 0.595 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.012 0.988 36 H 0.006 0.994 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.540 26.770 -4.125 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.363 5.363 3 C 0.094 3.906 4 C -0.206 4.206 5 C -0.164 4.164 6 N -0.085 5.085 7 C -0.069 4.069 8 N -0.118 5.118 9 N -0.171 5.171 10 C 0.393 3.607 11 O -0.509 6.509 12 N -0.392 5.392 13 C 0.036 3.964 14 C -0.010 4.010 15 C -0.588 4.588 16 H 0.074 0.926 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.196 1.196 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.138 0.862 26 H 0.086 0.914 27 H 0.171 0.829 28 H 0.264 0.736 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.120 0.880 32 H 0.242 0.758 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.024 0.976 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.614 26.162 -4.998 27.032 hybrid contribution -0.730 -0.840 0.208 1.132 sum -5.344 25.323 -4.789 26.320 Atomic orbital electron populations 1.22035 0.76937 1.05222 1.02601 1.47088 1.07876 1.03491 1.77801 1.19664 0.98472 0.84384 0.88128 1.22946 0.95090 1.01847 1.00756 1.24125 1.03134 1.04039 0.85144 1.47795 1.16932 1.30242 1.13531 1.22736 1.02848 0.95364 0.85951 1.78295 1.07513 1.08371 1.17589 1.75177 1.23713 1.19787 0.98387 1.16265 0.85086 0.81565 0.77804 1.90889 1.13799 1.86906 1.59349 1.45354 1.10310 1.04459 1.79066 1.21028 0.94685 0.81503 0.99134 1.19092 0.94095 0.91505 0.96279 1.21435 0.93545 0.92006 1.51817 0.92551 1.25861 0.95847 1.03016 0.94291 1.70049 1.07460 1.28099 1.50865 0.85493 0.78337 0.78090 0.79103 1.19270 1.20251 1.19567 0.92484 0.91539 0.86174 0.91355 0.82898 0.73619 0.87953 0.84230 0.88046 0.75808 0.94869 0.93867 0.96992 0.97570 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.25 127.77 1.31 2.46 16 2 N -0.63 -16.47 2.86 -869.31 -2.48 -18.96 16 3 C 0.22 4.84 6.01 85.63 0.51 5.36 16 4 C -0.07 -1.64 6.83 41.60 0.28 -1.36 16 5 C -0.01 -0.17 11.55 83.49 0.96 0.80 16 6 N -0.29 -5.28 3.74 -369.22 -1.38 -6.66 16 7 C 0.07 0.38 11.39 127.77 1.46 1.83 16 8 N -0.14 -4.25 13.16 37.02 0.49 -3.76 16 9 N -0.30 -10.97 12.41 -48.60 -0.60 -11.57 16 10 C 0.69 27.04 8.28 179.06 1.48 28.53 16 11 O -0.63 -30.83 15.92 -3.99 -0.06 -30.90 16 12 N -0.74 -28.86 5.42 -478.56 -2.59 -31.46 16 13 C 0.16 7.69 5.61 86.38 0.48 8.17 16 14 C 0.03 1.48 5.09 29.85 0.15 1.63 16 15 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 17 C 0.01 0.50 5.46 84.65 0.46 0.96 16 18 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 19 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 1.13 6.36 -2.39 -0.02 1.12 16 25 H 0.12 0.76 7.89 -2.39 -0.02 0.74 16 26 H 0.07 1.99 7.42 -2.39 -0.02 1.97 16 27 H 0.15 1.45 7.89 -2.39 -0.02 1.43 16 28 H 0.25 0.38 8.06 -2.92 -0.02 0.36 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.14 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.40 13.45 6.20 -92.71 -0.58 12.88 16 33 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -91.07 322.24 3.52 -87.55 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.50 Total: 7.23 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.34 Total: 16.52 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -6.29 Total: -127.33 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.06 Total: -30.90 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -91.07 3.52 -87.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328414183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.422 kcal (2) G-P(sol) polarization free energy of solvation -91.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds