Wall clock time and date at job start Mon Mar 30 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47131 * 300.00478 * 3 2 1 6 6 H 1.48502 * 109.46996 * 60.00216 * 3 2 1 7 7 C 1.37878 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47041 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46753 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99953 * 179.97438 * 11 10 9 14 14 C 1.46923 * 120.65061 * 179.97438 * 13 11 10 15 15 C 1.53156 * 108.80505 * 126.29653 * 14 13 11 16 16 H 1.08996 * 109.43755 * 174.22714 * 15 14 13 17 17 C 1.52930 * 109.50311 * 294.18665 * 15 14 13 18 18 C 1.53009 * 109.48800 * 60.35265 * 17 15 14 19 19 C 1.52989 * 109.39939 * 60.20559 * 18 17 15 20 20 C 1.52928 * 109.51273 * 299.80866 * 19 18 17 21 21 H 1.09002 * 109.43596 * 179.64641 * 20 19 18 22 22 C 1.46927 * 120.64996 * 0.02562 * 13 11 10 23 23 C 1.52968 * 109.43912 * 54.42087 * 15 14 13 24 24 O 1.42898 * 109.42567 * 179.03910 * 23 15 14 25 25 H 0.96997 * 120.00051 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46817 * 59.99965 * 9 7 2 27 27 H 1.09004 * 109.46842 * 300.00374 * 9 7 2 28 28 H 1.09000 * 109.47434 * 60.00232 * 10 9 7 29 29 H 1.09001 * 109.47272 * 299.99379 * 10 9 7 30 30 H 1.09002 * 109.57899 * 6.49723 * 14 13 11 31 31 H 1.09000 * 109.58334 * 246.08764 * 14 13 11 32 32 H 1.09002 * 109.46716 * 180.35890 * 17 15 14 33 33 H 1.08998 * 109.47065 * 300.34970 * 17 15 14 34 34 H 1.09001 * 109.48244 * 180.17276 * 18 17 15 35 35 H 1.08996 * 109.48709 * 300.21838 * 18 17 15 36 36 H 1.08999 * 109.46686 * 179.79725 * 19 18 17 37 37 H 1.08999 * 109.46054 * 59.81339 * 19 18 17 38 38 H 1.09007 * 109.58500 * 353.51803 * 22 13 11 39 39 H 1.09008 * 109.58578 * 113.93210 * 22 13 11 40 40 H 1.08996 * 109.42470 * 59.21308 * 23 15 14 41 41 H 0.96701 * 114.00031 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9671 -0.0011 13 7 2.1655 -6.1344 -0.0018 14 6 1.4453 -7.4151 -0.0019 15 6 1.9509 -8.2657 -1.1708 16 1 1.4988 -9.2562 -1.1208 17 6 1.5675 -7.5975 -2.4919 18 6 2.2079 -6.2099 -2.5667 19 6 3.7297 -6.3479 -2.4919 20 6 4.1179 -7.0140 -1.1712 21 1 5.2019 -7.1174 -1.1220 22 6 3.6346 -6.1512 -0.0013 23 6 3.4723 -8.3981 -1.0835 24 8 3.9413 -9.2104 -2.1615 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8906 30 1 0.3768 -7.2332 -0.1176 31 1 1.6295 -7.9378 0.9367 32 1 1.9220 -8.2066 -3.3234 33 1 0.4833 -7.5006 -2.5489 34 1 1.9321 -5.7324 -3.5070 35 1 1.8565 -5.6018 -1.7332 36 1 4.1873 -5.3602 -2.5488 37 1 4.0803 -6.9590 -3.3237 38 1 4.0117 -5.1349 -0.1164 39 1 3.9950 -6.5726 0.9372 40 1 3.7418 -8.8642 -0.1358 41 1 4.8998 -9.3382 -2.1695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330070655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:41 Heat of formation + Delta-G solvation = -88.109178 kcal Electronic energy + Delta-G solvation = -21855.200055 eV Core-core repulsion = 18734.675674 eV Total energy + Delta-G solvation = -3120.524380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32302 -38.44037 -35.88564 -33.71452 -33.52927 -32.80555 -31.05067 -30.20679 -26.62829 -25.72639 -24.50049 -22.35210 -21.99437 -21.25370 -19.27613 -18.34489 -17.32514 -17.00288 -16.04714 -15.54381 -15.35466 -15.07215 -14.52808 -14.37694 -14.14290 -13.45433 -13.19717 -13.14234 -12.77268 -12.68244 -12.25137 -12.22059 -11.83441 -11.66053 -11.35691 -11.10398 -11.02162 -10.95947 -10.82730 -10.57504 -10.48748 -9.99244 -9.97557 -9.76814 -9.58348 -9.17982 -8.99395 -8.33361 -8.13126 -5.96425 -4.00806 3.14234 3.23864 3.32195 3.39565 3.42566 4.01254 4.44088 4.46266 4.49820 4.76567 4.87556 5.05819 5.16202 5.23775 5.32854 5.35196 5.38723 5.41813 5.58416 5.63720 5.67634 5.72327 5.74429 5.91811 6.02983 6.10314 6.17638 6.18497 6.24073 6.35404 6.36751 6.64313 6.72667 6.89545 7.45103 7.69635 7.74166 7.85280 8.06481 8.37624 8.69707 9.07597 9.62835 11.14576 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034068 B = 0.004727 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.694598 B = 5921.416675 C = 6193.720292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.131 4.131 11 C 0.517 3.483 12 O -0.530 6.530 13 N -0.621 5.621 14 C 0.116 3.884 15 C -0.093 4.093 16 H 0.082 0.918 17 C -0.101 4.101 18 C -0.148 4.148 19 C -0.103 4.103 20 C -0.135 4.135 21 H 0.080 0.920 22 C 0.115 3.885 23 C 0.118 3.882 24 O -0.562 6.562 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -18.170 -2.097 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.308 3.692 12 O -0.405 6.405 13 N -0.357 5.357 14 C -0.007 4.007 15 C -0.112 4.112 16 H 0.100 0.900 17 C -0.139 4.139 18 C -0.186 4.186 19 C -0.140 4.140 20 C -0.154 4.154 21 H 0.098 0.902 22 C -0.009 4.009 23 C 0.059 3.941 24 O -0.367 6.367 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.895 -18.034 -2.221 20.231 hybrid contribution 1.215 0.851 0.128 1.489 sum 10.110 -17.183 -2.093 20.047 Atomic orbital electron populations 1.70009 1.06049 1.26465 1.50262 1.25019 0.94807 0.99204 0.95305 0.86549 0.80001 0.83897 0.77597 1.19761 1.21017 1.21015 1.21238 0.92912 0.90966 1.51288 0.92599 1.18912 0.93157 0.89371 0.98633 1.21945 1.00794 0.91974 1.02330 1.21381 0.88480 0.85441 0.73860 1.90681 1.14290 1.87081 1.48481 1.48416 1.06384 1.05900 1.75025 1.21515 0.98854 0.83749 0.96536 1.21407 0.93660 0.99505 0.96676 0.89971 1.21350 0.99966 0.96328 0.96236 1.22125 0.95081 0.97894 1.03494 1.21374 0.96773 0.99966 0.95919 1.22169 0.99965 0.96335 0.96942 0.90162 1.21688 0.80289 1.01782 0.97106 1.21666 0.94381 0.89069 0.88960 1.86526 1.27055 1.71821 1.51273 0.93005 0.95797 0.95831 0.90261 0.90210 0.88392 0.91957 0.91744 0.92264 0.92758 0.88776 0.91949 0.91865 0.88604 0.91607 0.92917 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.13 -2.64 3.97 -27.88 -0.11 -2.75 16 11 C 0.52 9.93 5.10 -10.98 -0.06 9.87 16 12 O -0.53 -12.39 15.40 5.56 0.09 -12.31 16 13 N -0.62 -8.96 1.64 -172.78 -0.28 -9.24 16 14 C 0.12 1.50 5.75 -3.73 -0.02 1.48 16 15 C -0.09 -1.06 2.91 -90.59 -0.26 -1.33 16 16 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 17 C -0.10 -1.32 5.30 -26.76 -0.14 -1.46 16 18 C -0.15 -2.12 5.58 -26.73 -0.15 -2.27 16 19 C -0.10 -1.19 5.30 -26.77 -0.14 -1.34 16 20 C -0.13 -1.30 2.88 -90.57 -0.26 -1.56 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 22 C 0.11 1.28 5.67 -3.71 -0.02 1.26 16 23 C 0.12 1.14 3.00 -26.76 -0.08 1.06 16 24 O -0.56 -5.29 12.07 -35.23 -0.43 -5.71 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.47 7.94 -51.93 -0.41 1.05 16 29 H 0.08 1.49 7.70 -51.93 -0.40 1.09 16 30 H 0.10 1.46 7.01 -51.93 -0.36 1.10 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.83 7.72 -51.93 -0.40 0.43 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.57 2.79 -51.93 -0.14 1.42 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.71 7.72 -51.93 -0.40 0.31 16 38 H 0.10 1.09 5.94 -51.93 -0.31 0.78 16 39 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.37 1.99 9.08 45.56 0.41 2.41 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -33.85 310.83 -7.78 -41.63 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.78 Total: 0.75 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.78 Total: -9.72 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.45 Total: -35.89 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.34 Total: -18.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.85 -7.78 -41.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330070655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.479 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds