Wall clock time and date at job start Mon Mar 30 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47131 * 300.00478 * 3 2 1 6 6 H 1.48502 * 109.46996 * 60.00216 * 3 2 1 7 7 C 1.37878 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47041 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46753 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99953 * 179.97438 * 11 10 9 14 14 C 1.46923 * 120.65061 * 179.97438 * 13 11 10 15 15 C 1.53156 * 108.80505 * 126.29653 * 14 13 11 16 16 H 1.08996 * 109.43755 * 174.22714 * 15 14 13 17 17 C 1.52930 * 109.50311 * 294.18665 * 15 14 13 18 18 C 1.53009 * 109.48800 * 60.35265 * 17 15 14 19 19 C 1.52989 * 109.39939 * 60.20559 * 18 17 15 20 20 C 1.52928 * 109.51273 * 299.80866 * 19 18 17 21 21 H 1.09002 * 109.43596 * 179.64641 * 20 19 18 22 22 C 1.46927 * 120.64996 * 0.02562 * 13 11 10 23 23 C 1.52968 * 109.43912 * 54.42087 * 15 14 13 24 24 O 1.42898 * 109.42567 * 179.03910 * 23 15 14 25 25 H 0.96997 * 120.00051 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46817 * 59.99965 * 9 7 2 27 27 H 1.09004 * 109.46842 * 300.00374 * 9 7 2 28 28 H 1.09000 * 109.47434 * 60.00232 * 10 9 7 29 29 H 1.09001 * 109.47272 * 299.99379 * 10 9 7 30 30 H 1.09002 * 109.57899 * 6.49723 * 14 13 11 31 31 H 1.09000 * 109.58334 * 246.08764 * 14 13 11 32 32 H 1.09002 * 109.46716 * 180.35890 * 17 15 14 33 33 H 1.08998 * 109.47065 * 300.34970 * 17 15 14 34 34 H 1.09001 * 109.48244 * 180.17276 * 18 17 15 35 35 H 1.08996 * 109.48709 * 300.21838 * 18 17 15 36 36 H 1.08999 * 109.46686 * 179.79725 * 19 18 17 37 37 H 1.08999 * 109.46054 * 59.81339 * 19 18 17 38 38 H 1.09007 * 109.58500 * 353.51803 * 22 13 11 39 39 H 1.09008 * 109.58578 * 113.93210 * 22 13 11 40 40 H 1.08996 * 109.42470 * 59.21308 * 23 15 14 41 41 H 0.96701 * 114.00031 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9671 -0.0011 13 7 2.1655 -6.1344 -0.0018 14 6 1.4453 -7.4151 -0.0019 15 6 1.9509 -8.2657 -1.1708 16 1 1.4988 -9.2562 -1.1208 17 6 1.5675 -7.5975 -2.4919 18 6 2.2079 -6.2099 -2.5667 19 6 3.7297 -6.3479 -2.4919 20 6 4.1179 -7.0140 -1.1712 21 1 5.2019 -7.1174 -1.1220 22 6 3.6346 -6.1512 -0.0013 23 6 3.4723 -8.3981 -1.0835 24 8 3.9413 -9.2104 -2.1615 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8906 30 1 0.3768 -7.2332 -0.1176 31 1 1.6295 -7.9378 0.9367 32 1 1.9220 -8.2066 -3.3234 33 1 0.4833 -7.5006 -2.5489 34 1 1.9321 -5.7324 -3.5070 35 1 1.8565 -5.6018 -1.7332 36 1 4.1873 -5.3602 -2.5488 37 1 4.0803 -6.9590 -3.3237 38 1 4.0117 -5.1349 -0.1164 39 1 3.9950 -6.5726 0.9372 40 1 3.7418 -8.8642 -0.1358 41 1 4.8998 -9.3382 -2.1695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330070655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:41 Heat of formation + Delta-G solvation = -111.929316 kcal Electronic energy + Delta-G solvation = -21856.232974 eV Core-core repulsion = 18734.675674 eV Total energy + Delta-G solvation = -3121.557299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40869 -39.74475 -36.79974 -35.63166 -34.77278 -33.90895 -32.83682 -31.34163 -28.13891 -27.07160 -25.73584 -23.73500 -23.11934 -22.55777 -20.61863 -19.37133 -18.91970 -18.00428 -17.69986 -16.76070 -16.67452 -16.42392 -16.04125 -15.53039 -15.32020 -14.71968 -14.37244 -14.23025 -14.10594 -14.03504 -13.69861 -13.61479 -13.15832 -12.86175 -12.82348 -12.63787 -12.44556 -12.23370 -11.97964 -11.91239 -11.88593 -11.60074 -11.55414 -11.28608 -10.87779 -10.71122 -10.58069 -10.43745 -9.28910 -8.18194 -6.32372 1.42073 1.43593 1.56787 1.65876 2.04138 2.43118 3.15079 3.29857 3.53406 3.62870 3.89965 3.95182 3.99352 4.16185 4.24412 4.39129 4.39892 4.46073 4.48551 4.54381 4.70793 4.72792 4.77729 4.79001 4.82223 4.88782 5.04664 5.06752 5.12885 5.30035 5.32642 5.37673 5.47630 5.53139 5.60916 5.66998 5.84362 6.16816 6.38897 6.86103 7.01582 7.25479 7.38146 8.94855 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034068 B = 0.004727 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.694598 B = 5921.416675 C = 6193.720292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.517 3.483 12 O -0.589 6.589 13 N -0.606 5.606 14 C 0.114 3.886 15 C -0.091 4.091 16 H 0.094 0.906 17 C -0.099 4.099 18 C -0.156 4.156 19 C -0.100 4.100 20 C -0.126 4.126 21 H 0.120 0.880 22 C 0.103 3.897 23 C 0.125 3.875 24 O -0.575 6.575 25 H 0.262 0.738 26 H -0.021 1.021 27 H -0.018 1.018 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.464 -19.405 -1.518 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.095 0.905 9 C 0.006 3.994 10 C -0.156 4.156 11 C 0.309 3.691 12 O -0.469 6.469 13 N -0.340 5.340 14 C -0.008 4.008 15 C -0.110 4.110 16 H 0.112 0.888 17 C -0.137 4.137 18 C -0.194 4.194 19 C -0.137 4.137 20 C -0.145 4.145 21 H 0.138 0.862 22 C -0.019 4.019 23 C 0.066 3.934 24 O -0.383 6.383 25 H 0.071 0.929 26 H -0.003 1.003 27 H 0.000 1.000 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 13.066 -19.326 -1.646 23.387 hybrid contribution -0.086 1.156 -0.107 1.165 sum 12.980 -18.170 -1.753 22.398 Atomic orbital electron populations 1.70192 1.08377 1.27724 1.51578 1.26140 0.95689 1.03958 0.94622 0.85275 0.79387 0.78067 0.77523 1.17429 1.20755 1.20591 1.21718 0.93971 0.91464 1.50624 0.90526 1.18681 0.93647 0.92563 0.94507 1.21675 0.99310 0.90327 1.04329 1.21093 0.87621 0.86633 0.73790 1.90658 1.16645 1.87946 1.51692 1.48327 1.08141 1.04870 1.72649 1.21638 0.97183 0.83214 0.98780 1.21378 0.96036 0.99198 0.94363 0.88761 1.21302 0.98571 0.95934 0.97862 1.22159 0.97818 0.98026 1.01422 1.21356 0.94026 1.00457 0.97889 1.22186 1.02217 0.95629 0.94488 0.86185 1.22096 0.77495 1.02674 0.99602 1.21569 0.92280 0.89280 0.90282 1.86489 1.29142 1.71518 1.51160 0.92891 1.00302 1.00003 0.87762 0.88354 0.91559 0.88944 0.91377 0.94485 0.94791 0.91200 0.92142 0.91056 0.88731 0.88197 0.90223 0.75605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.11 13.29 21.45 0.28 -59.83 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.47 4.26 29.85 0.13 2.60 16 10 C -0.12 -4.77 3.97 29.85 0.12 -4.66 16 11 C 0.52 20.49 5.10 87.66 0.45 20.93 16 12 O -0.59 -29.65 15.40 -3.03 -0.05 -29.70 16 13 N -0.61 -16.79 1.64 -818.94 -1.35 -18.14 16 14 C 0.11 2.82 5.75 86.35 0.50 3.32 16 15 C -0.09 -1.88 2.91 -10.78 -0.03 -1.91 16 16 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.10 -2.60 5.30 30.57 0.16 -2.43 16 18 C -0.16 -4.53 5.58 30.59 0.17 -4.36 16 19 C -0.10 -2.08 5.30 30.57 0.16 -1.92 16 20 C -0.13 -1.86 2.88 -10.76 -0.03 -1.89 16 21 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 22 C 0.10 1.89 5.67 86.36 0.49 2.38 16 23 C 0.12 1.84 3.00 30.58 0.09 1.93 16 24 O -0.57 -8.25 12.07 -148.98 -1.80 -10.05 16 25 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 26 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 27 H -0.02 -1.18 8.10 -2.38 -0.02 -1.20 16 28 H 0.10 3.71 7.94 -2.39 -0.02 3.69 16 29 H 0.10 3.62 7.70 -2.39 -0.02 3.60 16 30 H 0.07 2.08 7.01 -2.39 -0.02 2.06 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.72 7.72 -2.39 -0.02 1.70 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 2.40 2.79 -2.39 -0.01 2.40 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.39 7.72 -2.39 -0.02 1.37 16 38 H 0.09 1.80 5.94 -2.38 -0.01 1.79 16 39 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.39 2.13 9.08 -74.06 -0.67 1.46 16 Total: -1.00 -79.51 310.83 2.37 -77.14 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.35 Total: 10.74 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 2.90 Total: -16.56 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.06 Total: -77.97 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.84 Total: -39.75 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -79.51 2.37 -77.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330070655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.791 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds