Wall clock time and date at job start Mon Mar 30 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 N 1.46506 * 109.46958 * 120.00151 * 2 1 3 5 5 C 1.34774 * 119.99664 * 85.00108 * 4 2 1 6 6 O 1.21281 * 120.00389 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99618 * 179.97438 * 5 4 2 8 8 N 1.46491 * 109.47207 * 180.02562 * 7 5 4 9 9 C 1.35317 * 125.87029 * 125.29585 * 8 7 5 10 10 C 1.35352 * 106.17693 * 180.18381 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.09000 * 109.47400 * 299.99703 * 1 2 3 24 24 H 1.09005 * 109.46985 * 60.00420 * 1 2 3 25 25 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47400 * 240.00297 * 2 1 3 27 27 H 1.09000 * 109.47429 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47370 * 300.00086 * 3 2 1 29 29 H 1.09000 * 109.46669 * 59.99849 * 3 2 1 30 30 H 0.97000 * 119.99594 * 264.99857 * 4 2 1 31 31 H 1.08997 * 109.46964 * 60.00001 * 7 5 4 32 32 H 1.08999 * 109.47194 * 299.99933 * 7 5 4 33 33 H 1.08002 * 126.91295 * 0.03783 * 9 8 7 34 34 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 35 35 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 37 37 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -2.0323 1.1943 6 8 1.8590 -2.6677 0.2023 7 6 2.6498 -2.7427 2.4246 8 7 2.6996 -4.1844 2.1699 9 6 3.7837 -4.9797 2.3231 10 6 3.3883 -6.2269 1.9766 11 6 4.2353 -7.4734 1.9747 12 7 4.0588 -8.1855 3.2427 13 6 4.7294 -9.3580 3.4686 14 1 5.3918 -9.7552 2.7137 15 6 4.5578 -10.0358 4.6677 16 7 5.2027 -11.1623 4.8851 17 14 3.4115 -9.3489 5.9730 18 1 2.0426 -9.8843 5.7611 19 1 3.8967 -9.7493 7.3182 20 1 3.3838 -7.8673 5.8776 21 7 2.0964 -6.1365 1.6414 22 7 1.7184 -4.9134 1.7666 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9562 0.8900 30 1 2.2490 -0.1823 1.9895 31 1 1.9776 -2.5437 3.2592 32 1 3.6492 -2.3826 2.6691 33 1 4.7672 -4.6792 2.6530 34 1 5.2836 -7.2002 1.8542 35 1 3.9309 -8.1182 1.1503 36 1 3.4636 -7.8289 3.9205 37 1 5.0831 -11.6358 5.7232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330768947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:01 Heat of formation + Delta-G solvation = 82.375513 kcal Electronic energy + Delta-G solvation = -19636.987818 eV Core-core repulsion = 16452.608617 eV Total energy + Delta-G solvation = -3184.379202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.03080 -40.19969 -36.55170 -35.27601 -34.20588 -32.19704 -31.80919 -30.25586 -28.60375 -27.72537 -26.05855 -23.05114 -22.37824 -21.52813 -21.11840 -20.50288 -18.02445 -17.79304 -17.22967 -16.36473 -16.00990 -15.51444 -14.71621 -14.67421 -14.48786 -14.10011 -13.93448 -13.65005 -13.13921 -12.87083 -12.79220 -12.65851 -12.60694 -12.05386 -11.89179 -11.51323 -11.47240 -11.02359 -10.83310 -10.61167 -10.43766 -10.12896 -9.78463 -9.63259 -9.54844 -8.91258 -8.84666 -7.18548 -5.71722 -3.07002 1.70001 2.08535 2.14287 2.75767 2.89307 3.42666 3.48132 3.50773 4.00351 4.20751 4.37049 4.49895 4.54504 4.65271 4.68725 4.72424 5.06549 5.16506 5.19855 5.28231 5.41568 5.42793 5.57791 5.60697 5.75718 5.79129 5.80436 5.97676 6.34157 6.61029 6.63816 6.74827 6.93901 7.69891 8.03443 8.47095 8.81548 9.25499 9.98073 10.18634 11.46505 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.048483 B = 0.003296 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.378123 B = 8492.571207 C = 8628.282539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 C -0.160 4.160 4 N -0.726 5.726 5 C 0.502 3.498 6 O -0.501 6.501 7 C 0.100 3.900 8 N -0.294 5.294 9 C -0.046 4.046 10 C -0.010 4.010 11 C 0.238 3.762 12 N -0.750 5.750 13 C -0.242 4.242 14 H 0.093 0.907 15 C 0.006 3.994 16 N -0.934 5.934 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.280 1.280 21 N -0.255 5.255 22 N -0.067 5.067 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.401 0.599 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.191 0.809 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.362 0.638 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 30.491 -5.829 31.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 C -0.218 4.218 4 N -0.380 5.380 5 C 0.285 3.715 6 O -0.374 6.374 7 C -0.026 4.026 8 N -0.088 5.088 9 C -0.195 4.195 10 C -0.147 4.147 11 C 0.109 3.891 12 N -0.396 5.396 13 C -0.371 4.371 14 H 0.111 0.889 15 C -0.190 4.190 16 N -0.582 5.582 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.206 1.206 21 N -0.123 5.123 22 N -0.046 5.046 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.235 0.765 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.208 0.792 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.249 29.807 -7.030 31.256 hybrid contribution 0.420 0.943 1.852 2.120 sum -5.830 30.749 -5.178 31.723 Atomic orbital electron populations 1.22201 0.94964 1.03053 1.02191 1.20975 0.94430 0.92770 0.88464 1.22081 1.01772 0.94805 1.03139 1.45990 1.68406 1.06305 1.17311 1.20383 0.78853 0.82784 0.89504 1.90860 1.47266 1.65360 1.33868 1.21727 1.06326 0.76457 0.98065 1.46671 1.08731 1.08159 1.45256 1.23406 0.94764 0.91436 1.09915 1.22505 0.92688 0.96289 1.03212 1.18912 0.93814 0.85821 0.90505 1.42665 1.55251 1.26760 1.14915 1.19057 1.19978 0.96605 1.01499 0.88880 1.24630 0.99740 0.96878 0.97758 1.69698 1.45859 1.17017 1.25617 0.86539 0.81500 0.78390 0.82042 1.20970 1.21773 1.20593 1.75139 1.11668 1.08530 1.16951 1.78371 1.13436 0.97375 1.15440 0.92384 0.91471 0.91768 0.89284 0.91868 0.90721 0.91940 0.76455 0.85598 0.84833 0.79180 0.93598 0.93402 0.80506 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.48 37.16 0.35 -0.72 16 2 C 0.14 0.84 3.18 -67.93 -0.22 0.62 16 3 C -0.16 -0.53 9.38 37.16 0.35 -0.18 16 4 N -0.73 -4.13 5.08 -53.80 -0.27 -4.40 16 5 C 0.50 4.83 7.81 -10.98 -0.09 4.75 16 6 O -0.50 -7.66 15.34 5.56 0.09 -7.57 16 7 C 0.10 0.78 6.94 -5.20 -0.04 0.75 16 8 N -0.29 -4.18 3.20 -62.45 -0.20 -4.38 16 9 C -0.05 -0.68 11.50 -17.04 -0.20 -0.87 16 10 C -0.01 -0.19 6.61 -82.78 -0.55 -0.74 16 11 C 0.24 4.99 6.82 -5.19 -0.04 4.95 16 12 N -0.75 -18.89 5.40 -61.09 -0.33 -19.22 16 13 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 14 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 15 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 16 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 17 Si 0.88 23.00 27.74 -169.99 -4.71 18.29 16 18 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 19 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 21 N -0.25 -5.37 12.41 33.29 0.41 -4.95 16 22 N -0.07 -1.25 12.13 60.35 0.73 -0.52 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.75 7.58 -51.93 -0.39 0.35 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.40 0.84 8.60 -40.82 -0.35 0.49 16 31 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.13 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.36 9.18 5.52 -40.82 -0.23 8.95 16 37 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -39.67 321.16 -4.55 -44.22 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.21 Total: 1.29 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.67 Total: 1.44 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 1.12 Total: -62.52 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -39.67 -4.55 -44.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330768947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.597 kcal (2) G-P(sol) polarization free energy of solvation -39.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds