Wall clock time and date at job start Mon Mar 30 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 N 1.46506 * 109.46958 * 120.00151 * 2 1 3 5 5 C 1.34774 * 119.99664 * 85.00108 * 4 2 1 6 6 O 1.21281 * 120.00389 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99618 * 179.97438 * 5 4 2 8 8 N 1.46491 * 109.47207 * 180.02562 * 7 5 4 9 9 C 1.35317 * 125.87029 * 125.29585 * 8 7 5 10 10 C 1.35352 * 106.17693 * 180.18381 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.09000 * 109.47400 * 299.99703 * 1 2 3 24 24 H 1.09005 * 109.46985 * 60.00420 * 1 2 3 25 25 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47400 * 240.00297 * 2 1 3 27 27 H 1.09000 * 109.47429 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47370 * 300.00086 * 3 2 1 29 29 H 1.09000 * 109.46669 * 59.99849 * 3 2 1 30 30 H 0.97000 * 119.99594 * 264.99857 * 4 2 1 31 31 H 1.08997 * 109.46964 * 60.00001 * 7 5 4 32 32 H 1.08999 * 109.47194 * 299.99933 * 7 5 4 33 33 H 1.08002 * 126.91295 * 0.03783 * 9 8 7 34 34 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 35 35 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 37 37 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -2.0323 1.1943 6 8 1.8590 -2.6677 0.2023 7 6 2.6498 -2.7427 2.4246 8 7 2.6996 -4.1844 2.1699 9 6 3.7837 -4.9797 2.3231 10 6 3.3883 -6.2269 1.9766 11 6 4.2353 -7.4734 1.9747 12 7 4.0588 -8.1855 3.2427 13 6 4.7294 -9.3580 3.4686 14 1 5.3918 -9.7552 2.7137 15 6 4.5578 -10.0358 4.6677 16 7 5.2027 -11.1623 4.8851 17 14 3.4115 -9.3489 5.9730 18 1 2.0426 -9.8843 5.7611 19 1 3.8967 -9.7493 7.3182 20 1 3.3838 -7.8673 5.8776 21 7 2.0964 -6.1365 1.6414 22 7 1.7184 -4.9134 1.7666 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9562 0.8900 30 1 2.2490 -0.1823 1.9895 31 1 1.9776 -2.5437 3.2592 32 1 3.6492 -2.3826 2.6691 33 1 4.7672 -4.6792 2.6530 34 1 5.2836 -7.2002 1.8542 35 1 3.9309 -8.1182 1.1503 36 1 3.4636 -7.8289 3.9205 37 1 5.0831 -11.6358 5.7232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330768947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:01 Heat of formation + Delta-G solvation = 49.541711 kcal Electronic energy + Delta-G solvation = -19638.411599 eV Core-core repulsion = 16452.608617 eV Total energy + Delta-G solvation = -3185.802982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.26126 -40.93228 -37.27208 -36.92901 -35.48311 -33.81021 -32.78572 -31.93772 -29.47420 -28.12420 -27.79565 -24.39261 -23.89534 -22.64459 -21.97818 -21.50104 -19.89033 -18.63954 -18.35253 -17.27239 -16.79353 -16.56466 -16.29668 -15.95534 -15.75369 -15.19105 -14.97444 -14.83722 -14.42364 -14.13000 -13.90022 -13.49295 -13.33592 -13.21705 -13.08226 -12.89877 -12.51253 -12.33406 -12.11363 -11.96048 -11.86204 -11.80540 -11.53607 -11.02016 -10.81621 -10.23625 -10.21707 -9.31572 -8.01634 -5.35285 0.58380 1.26140 1.35556 1.41539 1.41946 1.45447 1.50206 2.10604 2.48830 3.27689 3.30793 3.56459 3.74436 3.83654 3.92675 4.01376 4.03143 4.11451 4.24341 4.28814 4.54893 4.69684 4.73274 4.84394 4.91597 4.98917 5.12490 5.15207 5.24419 5.30438 5.44757 5.59681 5.75898 6.21797 6.42799 7.06195 7.12811 7.52058 7.80892 8.01721 9.19564 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.048483 B = 0.003296 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.378123 B = 8492.571207 C = 8628.282539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.151 4.151 4 N -0.703 5.703 5 C 0.499 3.501 6 O -0.569 6.569 7 C 0.090 3.910 8 N -0.281 5.281 9 C -0.013 4.013 10 C -0.047 4.047 11 C 0.241 3.759 12 N -0.752 5.752 13 C -0.232 4.232 14 H 0.066 0.934 15 C -0.059 4.059 16 N -0.980 5.980 17 Si 0.953 3.047 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.255 1.255 21 N -0.304 5.304 22 N -0.095 5.095 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.423 0.577 31 H 0.160 0.840 32 H 0.190 0.810 33 H 0.241 0.759 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.363 0.637 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 34.587 -4.108 35.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 C -0.208 4.208 4 N -0.357 5.357 5 C 0.283 3.717 6 O -0.446 6.446 7 C -0.033 4.033 8 N -0.075 5.075 9 C -0.164 4.164 10 C -0.185 4.185 11 C 0.113 3.887 12 N -0.397 5.397 13 C -0.363 4.363 14 H 0.084 0.916 15 C -0.251 4.251 16 N -0.631 5.631 17 Si 0.781 3.219 18 H -0.216 1.216 19 H -0.214 1.214 20 H -0.180 1.180 21 N -0.172 5.172 22 N -0.074 5.074 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.261 0.739 31 H 0.177 0.823 32 H 0.207 0.793 33 H 0.257 0.743 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.196 0.804 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.923 34.023 -5.307 34.940 hybrid contribution 0.342 -0.185 1.206 1.267 sum -5.581 33.838 -4.100 34.540 Atomic orbital electron populations 1.22170 0.95305 1.01054 1.03533 1.21002 0.94165 0.94263 0.87580 1.22018 1.02002 0.92477 1.04323 1.45841 1.66619 1.05251 1.18035 1.20776 0.78024 0.83656 0.89212 1.90855 1.50517 1.66886 1.36383 1.22439 1.10502 0.72637 0.97767 1.47081 1.07509 1.10224 1.42673 1.23976 0.96156 0.89765 1.06530 1.22304 0.92543 0.97243 1.06440 1.18889 0.95495 0.86396 0.87876 1.42672 1.54696 1.25892 1.16479 1.19060 1.18959 0.97639 1.00610 0.91607 1.25414 1.01943 0.97419 1.00343 1.69862 1.48063 1.18769 1.26403 0.85440 0.78553 0.79024 0.78909 1.21558 1.21441 1.17971 1.75059 1.13126 1.10266 1.18707 1.78264 1.15079 0.97138 1.16923 0.90684 0.90559 0.95321 0.92229 0.91377 0.90238 0.90088 0.73852 0.82266 0.79258 0.74279 0.91207 0.95313 0.80422 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 71.98 0.68 -1.27 16 2 C 0.13 1.44 3.18 44.99 0.14 1.58 16 3 C -0.15 -0.55 9.38 71.98 0.68 0.12 16 4 N -0.70 -5.98 5.08 -442.53 -2.25 -8.23 16 5 C 0.50 8.51 7.81 87.66 0.68 9.19 16 6 O -0.57 -17.46 15.34 -3.03 -0.05 -17.51 16 7 C 0.09 0.99 6.94 85.64 0.59 1.59 16 8 N -0.28 -7.15 3.20 -351.48 -1.12 -8.27 16 9 C -0.01 -0.34 11.50 83.49 0.96 0.62 16 10 C -0.05 -1.76 6.61 41.60 0.28 -1.48 16 11 C 0.24 9.99 6.82 85.63 0.58 10.58 16 12 N -0.75 -37.37 5.40 -347.18 -1.87 -39.25 16 13 C -0.23 -13.62 10.47 84.03 0.88 -12.74 16 14 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 15 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 16 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 17 Si 0.95 47.34 27.74 68.60 1.90 49.24 16 18 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 20 H -0.25 -11.50 6.52 99.48 0.65 -10.85 16 21 N -0.30 -12.87 12.41 -48.60 -0.60 -13.47 16 22 N -0.09 -3.48 12.13 37.02 0.45 -3.03 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.08 0.75 8.14 -2.38 -0.02 0.74 16 25 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 1.02 7.58 -2.39 -0.02 1.00 16 27 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.08 0.03 8.14 -2.39 -0.02 0.02 16 30 H 0.42 -0.13 8.60 -92.71 -0.80 -0.93 16 31 H 0.16 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.19 -0.02 8.07 -2.39 -0.02 -0.04 16 33 H 0.24 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.36 17.81 5.52 -92.71 -0.51 17.29 16 37 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -92.20 321.16 2.43 -89.77 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -0.28 Total: 9.13 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.95 Total: 5.06 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -5.10 Total: -135.69 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.05 Total: -17.51 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.90 Total: 49.24 kcal Total: -92.20 2.43 -89.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330768947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.314 kcal (2) G-P(sol) polarization free energy of solvation -92.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds