Wall clock time and date at job start Mon Mar 30 2020 01:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47366 * 269.99983 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00294 * 3 2 1 6 6 H 1.48506 * 109.47139 * 150.00284 * 3 2 1 7 7 C 1.37879 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47005 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47078 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47188 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00096 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00286 * 179.97438 * 12 11 10 15 15 C 1.50246 * 130.83434 * 359.97438 * 14 12 11 16 16 C 1.55846 * 101.04932 * 126.05380 * 15 14 12 17 17 C 1.55873 * 103.53011 * 32.32944 * 16 15 14 18 18 C 1.50241 * 130.84077 * 180.02562 * 14 12 11 19 19 C 1.52991 * 115.85902 * 0.33449 * 18 14 12 20 20 O 1.42895 * 109.47478 * 180.02562 * 19 18 14 21 21 C 1.55842 * 101.05087 * 126.01344 * 18 14 12 22 22 C 1.54857 * 103.44496 * 32.93444 * 21 18 14 23 23 H 0.97002 * 120.00304 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47043 * 60.00086 * 9 7 2 25 25 H 1.08997 * 109.47333 * 300.00039 * 9 7 2 26 26 H 1.09001 * 109.47357 * 60.00025 * 10 9 7 27 27 H 1.09001 * 109.47558 * 299.99773 * 10 9 7 28 28 H 1.08995 * 109.47653 * 59.99802 * 11 10 9 29 29 H 1.09005 * 109.46705 * 299.99648 * 11 10 9 30 30 H 1.08999 * 115.85550 * 0.37664 * 15 14 12 31 31 H 1.08989 * 110.62665 * 151.42775 * 16 15 14 32 32 H 1.09003 * 110.62182 * 274.44685 * 16 15 14 33 33 H 1.08994 * 111.60410 * 242.19426 * 17 16 15 34 34 H 1.08997 * 110.09878 * 118.86342 * 17 16 15 35 35 H 1.08998 * 109.47604 * 300.00583 * 19 18 14 36 36 H 1.09007 * 109.47154 * 59.99817 * 19 18 14 37 37 H 0.96698 * 114.00435 * 179.97438 * 20 19 18 38 38 H 1.08998 * 110.62753 * 151.42326 * 21 18 14 39 39 H 1.09002 * 110.62335 * 274.45122 * 21 18 14 40 40 H 1.08998 * 110.62889 * 241.50859 * 22 21 18 41 41 H 1.09001 * 110.62392 * 118.49454 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6518 -5.9110 -0.0001 14 7 2.0103 -7.4033 -0.0004 15 6 0.6110 -7.9506 -0.0003 16 6 0.6608 -8.8979 -1.2369 17 6 2.1342 -9.4063 -1.2477 18 6 2.7544 -8.7084 0.0007 19 6 4.2809 -8.6062 0.0099 20 8 4.8462 -9.9186 0.0093 21 6 2.1201 -9.4129 1.2376 22 6 0.6601 -8.8966 1.2366 23 1 -0.4851 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0447 -0.8913 29 1 0.8533 -5.0451 0.8887 30 1 -0.1890 -7.2103 -0.0068 31 1 -0.0388 -9.7247 -1.1155 32 1 0.4490 -8.3455 -2.1524 33 1 2.6563 -9.1044 -2.1556 34 1 2.1574 -10.4900 -1.1325 35 1 4.6144 -8.0669 -0.8767 36 1 4.6038 -8.0714 0.9032 37 1 5.8131 -9.9304 0.0145 38 1 2.1445 -10.4959 1.1171 39 1 2.6318 -9.1157 2.1530 40 1 0.4478 -8.3435 2.1515 41 1 -0.0395 -9.7237 1.1156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332463947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:56 Heat of formation + Delta-G solvation = -84.371349 kcal Electronic energy + Delta-G solvation = -20843.899939 eV Core-core repulsion = 17723.537643 eV Total energy + Delta-G solvation = -3120.362296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97816 -38.20388 -36.70448 -34.17588 -32.16560 -31.33113 -30.67165 -30.62950 -27.71387 -25.52434 -24.09852 -22.45880 -22.33924 -20.29749 -19.30711 -18.48153 -17.30315 -16.79261 -16.15727 -15.98755 -15.70919 -14.81531 -14.68009 -14.35493 -14.19892 -13.51688 -13.16778 -13.14158 -12.80941 -12.62874 -12.29005 -11.85416 -11.80411 -11.79277 -11.59657 -11.32558 -11.04848 -10.79874 -10.79008 -10.57345 -10.51885 -10.36998 -9.99505 -9.66378 -9.60310 -9.24059 -8.99378 -8.74556 -8.31165 -5.96879 -3.98213 2.75392 2.91182 3.35265 3.40991 3.45874 4.14684 4.29188 4.36275 4.41670 4.50086 4.77427 4.83096 4.97660 5.01725 5.03030 5.20313 5.26480 5.39214 5.52195 5.57399 5.62407 5.71814 5.72885 5.73204 5.74031 5.79352 5.96968 5.97750 6.06773 6.21607 6.34163 6.73955 6.94637 7.16736 7.40656 7.70044 7.74922 7.84748 8.03907 8.43447 8.47986 9.08783 9.65663 11.14661 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.003785 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.811194 B = 7396.364453 C = 7901.259491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.132 4.132 12 C 0.538 3.462 13 O -0.540 6.540 14 N -0.631 5.631 15 C 0.123 3.877 16 C -0.134 4.134 17 C -0.118 4.118 18 C 0.154 3.846 19 C 0.106 3.894 20 O -0.574 6.574 21 C -0.118 4.118 22 C -0.133 4.133 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.383 0.617 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 -22.848 0.015 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.171 4.171 12 C 0.329 3.671 13 O -0.417 6.417 14 N -0.369 5.369 15 C 0.020 3.980 16 C -0.172 4.172 17 C -0.156 4.156 18 C 0.069 3.931 19 C 0.028 3.972 20 O -0.379 6.379 21 C -0.156 4.156 22 C -0.171 4.171 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.230 0.770 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.185 -22.592 0.016 22.623 hybrid contribution 0.891 1.161 -0.007 1.464 sum 2.076 -21.431 0.009 21.532 Atomic orbital electron populations 1.69963 1.06034 1.26523 1.51232 1.25015 0.94851 0.99230 0.95388 0.86594 0.79902 0.83429 0.78100 1.20677 1.21253 1.19846 1.21270 0.93177 0.91011 1.50123 0.92603 1.19126 0.93959 0.91445 0.97098 1.21454 0.98644 0.91495 1.01635 1.21813 0.98075 0.93688 1.03548 1.20951 0.90097 0.81811 0.74262 1.90656 1.17271 1.83669 1.50072 1.50760 1.07842 1.03950 1.74311 1.23657 0.84727 0.94321 0.95285 1.23154 0.96763 0.99043 0.98231 1.22997 0.95154 1.00076 0.97386 1.22669 0.91435 0.82850 0.96099 1.21656 0.90404 0.83409 1.01741 1.86333 1.25407 1.28261 1.97882 1.22815 0.95269 1.00057 0.97496 1.22961 0.96904 0.98987 0.98252 0.93078 0.96627 0.96623 0.92732 0.92745 0.89538 0.89544 0.85963 0.90251 0.91040 0.91280 0.90402 0.92327 0.92357 0.76970 0.90308 0.91414 0.90955 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 10 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 11 C -0.13 -2.28 5.07 -27.88 -0.14 -2.42 16 12 C 0.54 9.20 7.98 -10.99 -0.09 9.12 16 13 O -0.54 -10.95 14.56 5.56 0.08 -10.87 16 14 N -0.63 -8.52 2.90 -139.42 -0.40 -8.92 16 15 C 0.12 1.23 5.10 -62.82 -0.32 0.91 16 16 C -0.13 -1.17 6.47 -23.68 -0.15 -1.32 16 17 C -0.12 -1.20 6.09 -23.65 -0.14 -1.34 16 18 C 0.15 1.84 1.47 -126.67 -0.19 1.66 16 19 C 0.11 1.33 5.46 37.15 0.20 1.53 16 20 O -0.57 -5.93 13.47 -35.23 -0.47 -6.40 16 21 C -0.12 -1.20 6.01 -24.23 -0.15 -1.34 16 22 C -0.13 -1.16 6.44 -24.26 -0.16 -1.32 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.12 1.10 7.87 -51.93 -0.41 0.69 16 31 H 0.08 0.53 7.81 -51.94 -0.41 0.13 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 36 H 0.06 0.81 7.84 -51.92 -0.41 0.40 16 37 H 0.38 2.34 9.12 45.56 0.42 2.75 16 38 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.53 7.81 -51.93 -0.41 0.12 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -33.97 330.49 -8.10 -42.07 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.20 Total: -1.27 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.80 Total: -10.22 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.33 Total: -35.42 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.39 Total: -17.27 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.97 -8.10 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332463947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.302 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds