Wall clock time and date at job start Mon Mar 30 2020 01:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47366 * 269.99983 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00294 * 3 2 1 6 6 H 1.48506 * 109.47139 * 150.00284 * 3 2 1 7 7 C 1.37879 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47005 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47078 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47188 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00096 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00286 * 179.97438 * 12 11 10 15 15 C 1.50246 * 130.83434 * 359.97438 * 14 12 11 16 16 C 1.55846 * 101.04932 * 126.05380 * 15 14 12 17 17 C 1.55873 * 103.53011 * 32.32944 * 16 15 14 18 18 C 1.50241 * 130.84077 * 180.02562 * 14 12 11 19 19 C 1.52991 * 115.85902 * 0.33449 * 18 14 12 20 20 O 1.42895 * 109.47478 * 180.02562 * 19 18 14 21 21 C 1.55842 * 101.05087 * 126.01344 * 18 14 12 22 22 C 1.54857 * 103.44496 * 32.93444 * 21 18 14 23 23 H 0.97002 * 120.00304 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47043 * 60.00086 * 9 7 2 25 25 H 1.08997 * 109.47333 * 300.00039 * 9 7 2 26 26 H 1.09001 * 109.47357 * 60.00025 * 10 9 7 27 27 H 1.09001 * 109.47558 * 299.99773 * 10 9 7 28 28 H 1.08995 * 109.47653 * 59.99802 * 11 10 9 29 29 H 1.09005 * 109.46705 * 299.99648 * 11 10 9 30 30 H 1.08999 * 115.85550 * 0.37664 * 15 14 12 31 31 H 1.08989 * 110.62665 * 151.42775 * 16 15 14 32 32 H 1.09003 * 110.62182 * 274.44685 * 16 15 14 33 33 H 1.08994 * 111.60410 * 242.19426 * 17 16 15 34 34 H 1.08997 * 110.09878 * 118.86342 * 17 16 15 35 35 H 1.08998 * 109.47604 * 300.00583 * 19 18 14 36 36 H 1.09007 * 109.47154 * 59.99817 * 19 18 14 37 37 H 0.96698 * 114.00435 * 179.97438 * 20 19 18 38 38 H 1.08998 * 110.62753 * 151.42326 * 21 18 14 39 39 H 1.09002 * 110.62335 * 274.45122 * 21 18 14 40 40 H 1.08998 * 110.62889 * 241.50859 * 22 21 18 41 41 H 1.09001 * 110.62392 * 118.49454 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6518 -5.9110 -0.0001 14 7 2.0103 -7.4033 -0.0004 15 6 0.6110 -7.9506 -0.0003 16 6 0.6608 -8.8979 -1.2369 17 6 2.1342 -9.4063 -1.2477 18 6 2.7544 -8.7084 0.0007 19 6 4.2809 -8.6062 0.0099 20 8 4.8462 -9.9186 0.0093 21 6 2.1201 -9.4129 1.2376 22 6 0.6601 -8.8966 1.2366 23 1 -0.4851 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0447 -0.8913 29 1 0.8533 -5.0451 0.8887 30 1 -0.1890 -7.2103 -0.0068 31 1 -0.0388 -9.7247 -1.1155 32 1 0.4490 -8.3455 -2.1524 33 1 2.6563 -9.1044 -2.1556 34 1 2.1574 -10.4900 -1.1325 35 1 4.6144 -8.0669 -0.8767 36 1 4.6038 -8.0714 0.9032 37 1 5.8131 -9.9304 0.0145 38 1 2.1445 -10.4959 1.1171 39 1 2.6318 -9.1157 2.1530 40 1 0.4478 -8.3435 2.1515 41 1 -0.0395 -9.7237 1.1156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332463947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:51 Heat of formation + Delta-G solvation = -107.687008 kcal Electronic energy + Delta-G solvation = -20844.910982 eV Core-core repulsion = 17723.537643 eV Total energy + Delta-G solvation = -3121.373339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -41.93583 -39.49849 -37.58048 -36.13583 -34.08079 -32.57210 -31.53560 -31.40072 -29.53543 -26.48118 -25.91000 -23.64450 -23.18724 -21.97848 -20.34542 -19.63075 -18.50001 -18.17615 -17.79043 -17.09356 -16.57007 -16.46357 -16.12596 -15.92746 -15.20395 -14.57298 -14.45981 -14.37394 -14.03041 -13.77613 -13.65453 -13.53542 -13.10916 -12.80804 -12.64636 -12.58824 -12.46343 -12.40669 -12.30149 -11.80202 -11.61785 -11.59548 -11.45672 -11.26814 -11.19945 -10.87247 -10.67794 -10.55453 -9.83553 -8.21228 -6.31361 1.38823 1.39995 1.51524 1.61362 1.72234 2.40794 3.11687 3.20527 3.47998 3.49737 3.53988 3.87326 4.00970 4.08117 4.15449 4.20520 4.21558 4.25170 4.38130 4.50141 4.57204 4.66004 4.72984 4.81213 4.92596 4.99940 5.03257 5.06110 5.08364 5.13436 5.17315 5.24354 5.34647 5.44847 5.51868 5.72773 5.84471 6.25915 6.57493 6.73673 6.83447 7.15531 7.37289 8.90381 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.003785 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.811194 B = 7396.364453 C = 7901.259491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.121 4.121 12 C 0.534 3.466 13 O -0.585 6.585 14 N -0.630 5.630 15 C 0.114 3.886 16 C -0.125 4.125 17 C -0.114 4.114 18 C 0.137 3.863 19 C 0.114 3.886 20 O -0.572 6.572 21 C -0.114 4.114 22 C -0.125 4.125 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.401 0.599 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -24.313 0.002 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.118 4.118 11 C -0.161 4.161 12 C 0.325 3.675 13 O -0.465 6.465 14 N -0.366 5.366 15 C 0.012 3.988 16 C -0.163 4.163 17 C -0.153 4.153 18 C 0.054 3.946 19 C 0.035 3.965 20 O -0.379 6.379 21 C -0.152 4.152 22 C -0.163 4.163 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.251 0.749 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.150 -24.113 0.002 24.113 hybrid contribution 1.218 1.533 -0.003 1.958 sum 1.368 -22.579 -0.001 22.621 Atomic orbital electron populations 1.70063 1.07484 1.27825 1.51488 1.25895 0.95827 1.03024 0.94604 0.85498 0.78618 0.78681 0.78568 1.19680 1.20186 1.19343 1.21672 0.93295 0.92796 1.50893 0.93158 1.19001 0.94131 0.92295 0.95519 1.21153 0.97628 0.92872 1.00158 1.21609 0.97797 0.91495 1.05166 1.20731 0.89235 0.83057 0.74484 1.90635 1.18767 1.84632 1.52479 1.50799 1.10210 1.03370 1.72266 1.24070 0.82927 0.94939 0.96830 1.23172 0.96231 0.99597 0.97332 1.22992 0.95827 1.00870 0.95561 1.22963 0.90995 0.82258 0.98387 1.21401 0.91503 0.83912 0.99636 1.86293 1.27232 1.26712 1.97695 1.22810 0.95898 1.00842 0.95675 1.22978 0.96419 0.99533 0.97355 0.92612 0.98058 0.98060 0.94212 0.94199 0.87876 0.87886 0.84793 0.87033 0.91325 0.92725 0.88629 0.94513 0.94521 0.74927 0.88530 0.92848 0.91231 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.55 -32.72 9.11 25.60 0.23 -32.48 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.08 -3.64 4.44 30.60 0.14 -3.51 16 11 C -0.12 -4.20 5.07 29.85 0.15 -4.05 16 12 C 0.53 18.52 7.98 87.66 0.70 19.22 16 13 O -0.58 -24.74 14.56 -3.02 -0.04 -24.78 16 14 N -0.63 -16.51 2.90 -713.40 -2.07 -18.58 16 15 C 0.11 1.96 5.10 46.21 0.24 2.20 16 16 C -0.13 -1.77 6.47 32.57 0.21 -1.56 16 17 C -0.11 -2.07 6.09 32.59 0.20 -1.87 16 18 C 0.14 3.15 1.47 4.85 0.01 3.16 16 19 C 0.11 2.93 5.46 71.98 0.39 3.32 16 20 O -0.57 -11.37 13.47 -148.98 -2.01 -13.38 16 21 C -0.11 -2.05 6.01 32.21 0.19 -1.86 16 22 C -0.12 -1.76 6.44 32.20 0.21 -1.56 16 23 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.10 3.21 8.14 -2.39 -0.02 3.20 16 29 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 30 H 0.13 2.01 7.87 -2.39 -0.02 1.99 16 31 H 0.11 0.92 7.81 -2.39 -0.02 0.91 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.41 7.85 -2.39 -0.02 1.39 16 35 H 0.04 1.08 7.81 -2.39 -0.02 1.06 16 36 H 0.04 1.08 7.84 -2.38 -0.02 1.06 16 37 H 0.40 4.63 9.12 -74.06 -0.68 3.95 16 38 H 0.10 1.42 7.85 -2.39 -0.02 1.40 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.11 0.92 7.81 -2.39 -0.02 0.90 16 Total: -1.00 -74.79 330.49 1.80 -72.99 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.33 Total: 9.17 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 3.28 Total: -16.61 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.78 Total: -74.92 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -2.05 Total: -38.16 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.79 1.80 -72.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332463947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.700 kcal (2) G-P(sol) polarization free energy of solvation -74.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds