Wall clock time and date at job start Mon Mar 30 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 N 1.46500 * 109.47118 * 119.99958 * 2 1 3 5 5 N 1.40590 * 127.38008 * 300.17142 * 4 2 1 6 6 N 1.28912 * 106.81209 * 180.26395 * 5 4 2 7 7 N 1.28425 * 110.31797 * 359.74032 * 6 5 4 8 8 C 1.31476 * 110.50605 * 0.02562 * 7 6 5 9 9 N 1.38385 * 126.43564 * 179.97438 * 8 7 6 10 10 C 1.47439 * 110.99810 * 239.89412 * 9 8 7 11 11 C 1.54321 * 107.23156 * 123.25757 * 10 9 8 12 12 C 1.55145 * 103.01637 * 22.28442 * 11 10 9 13 13 O 1.42904 * 110.98978 * 82.43929 * 12 11 10 14 14 C 1.50699 * 110.98691 * 206.21415 * 12 11 10 15 15 H 1.07999 * 119.99639 * 118.55331 * 14 12 11 16 16 C 1.37878 * 120.00048 * 298.54337 * 14 12 11 17 17 N 1.31510 * 120.00406 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99822 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46916 * 60.00434 * 18 16 14 20 20 H 1.48498 * 109.47152 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47141 * 300.00741 * 18 16 14 22 22 C 1.47842 * 110.99847 * 0.74072 * 9 8 7 23 23 H 1.08996 * 109.47340 * 299.99996 * 1 2 3 24 24 H 1.08999 * 109.47152 * 59.99933 * 1 2 3 25 25 H 1.09006 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47340 * 240.00004 * 2 1 3 27 27 H 1.09004 * 109.46635 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47289 * 299.99983 * 3 2 1 29 29 H 1.09007 * 109.46886 * 60.00341 * 3 2 1 30 30 H 1.09000 * 109.89202 * 242.66631 * 10 9 8 31 31 H 1.09004 * 109.89307 * 3.85594 * 10 9 8 32 32 H 1.09004 * 110.70387 * 140.66883 * 11 10 9 33 33 H 1.08996 * 110.70762 * 263.89915 * 11 10 9 34 34 H 0.96701 * 113.99832 * 61.44580 * 13 12 11 35 35 H 0.96997 * 120.00291 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.37758 * 332.46373 * 22 9 8 37 37 H 1.08997 * 110.37426 * 94.81021 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7735 -0.3501 2.5381 6 7 2.3950 -1.2169 3.2621 7 7 3.0001 -2.0693 2.5161 8 6 2.7993 -1.7944 1.2462 9 7 3.2979 -2.4982 0.1640 10 6 4.1427 -1.6364 -0.6830 11 6 5.5280 -2.3092 -0.7816 12 6 5.2192 -3.7942 -0.4553 13 8 4.7400 -4.4835 -1.6117 14 6 6.4305 -4.4841 0.1175 15 1 6.3959 -4.8957 1.1153 16 6 7.5826 -4.5898 -0.6325 17 7 7.6248 -4.0883 -1.8474 18 14 9.0838 -5.4456 0.0773 19 1 8.7412 -6.8520 0.4089 20 1 10.1831 -5.4256 -0.9207 21 1 9.5204 -4.7392 1.3084 22 6 4.1033 -3.6550 0.6100 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.7025 -1.5465 -1.6761 31 1 4.2408 -0.6508 -0.2279 32 1 5.9328 -2.2121 -1.7891 33 1 6.2143 -1.8879 -0.0472 34 1 5.3719 -4.5109 -2.3432 35 1 8.4355 -4.1624 -2.3749 36 1 4.5371 -3.4599 1.5907 37 1 3.4905 -4.5560 0.6375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332939157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:08 Heat of formation + Delta-G solvation = 58.311906 kcal Electronic energy + Delta-G solvation = -21345.628893 eV Core-core repulsion = 18160.206215 eV Total energy + Delta-G solvation = -3185.422678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.09490 -40.46976 -37.77677 -36.75859 -34.19793 -33.16297 -32.83739 -30.50796 -30.21489 -28.29106 -26.88977 -25.69314 -23.79958 -22.49997 -21.90874 -21.31445 -19.29386 -18.28327 -17.94418 -17.47259 -16.91914 -16.56047 -15.91929 -15.67562 -15.06891 -14.83767 -14.55798 -14.25270 -14.01432 -13.97780 -13.53238 -13.25291 -13.23182 -13.18491 -13.03661 -12.72923 -12.64028 -12.48059 -12.28706 -12.26162 -12.07670 -11.85746 -11.46740 -11.39959 -11.24374 -10.63620 -10.17603 -9.81398 -8.24628 -6.38301 -0.05669 0.69180 1.16660 1.43564 1.45355 1.52153 2.35685 2.47181 3.00171 3.06207 3.45283 3.64521 3.79509 3.92545 3.96563 4.05037 4.09510 4.19470 4.31485 4.49520 4.57073 4.62881 4.65427 4.73640 4.78140 4.90332 5.03133 5.14796 5.16327 5.17555 5.27858 5.41360 5.48891 5.75177 5.81346 6.08964 6.64938 7.32304 7.42344 7.42996 8.81106 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030835 B = 0.005502 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.847402 B = 5087.452656 C = 5467.246529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.370 5.370 5 N -0.092 5.092 6 N -0.058 5.058 7 N -0.390 5.390 8 C 0.419 3.581 9 N -0.436 5.436 10 C 0.052 3.948 11 C -0.133 4.133 12 C 0.243 3.757 13 O -0.583 6.583 14 C -0.563 4.563 15 H 0.052 0.948 16 C 0.040 3.960 17 N -0.905 5.905 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.278 1.278 21 H -0.276 1.276 22 C 0.075 3.925 23 H 0.066 0.934 24 H 0.116 0.884 25 H 0.051 0.949 26 H 0.123 0.877 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.378 0.622 35 H 0.271 0.729 36 H 0.075 0.925 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 10.504 -2.858 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 C -0.215 4.215 4 N -0.171 5.171 5 N -0.080 5.080 6 N -0.053 5.053 7 N -0.249 5.249 8 C 0.053 3.947 9 N -0.160 5.160 10 C -0.073 4.073 11 C -0.173 4.173 12 C 0.203 3.797 13 O -0.391 6.391 14 C -0.602 4.602 15 H 0.071 0.929 16 C -0.161 4.161 17 N -0.543 5.543 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.202 1.202 22 C -0.051 4.051 23 H 0.085 0.915 24 H 0.135 0.865 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.562 10.536 -1.618 15.006 hybrid contribution 1.977 -0.448 -0.395 2.066 sum -8.585 10.088 -2.014 13.399 Atomic orbital electron populations 1.22133 0.90751 1.03086 1.05170 1.22218 0.97695 0.94980 0.81901 1.22202 1.01455 0.92497 1.05341 1.51906 1.36084 1.20727 1.08430 1.82250 1.21900 1.19746 0.84081 1.77822 1.04749 0.98717 1.24053 1.74789 1.25399 1.25245 0.99470 1.23630 0.92820 0.86437 0.91827 1.60446 1.36783 1.07527 1.11292 1.23145 0.92725 0.93748 0.97668 1.23105 0.93844 0.97681 1.02624 1.19625 0.88796 0.88388 0.82919 1.86135 1.46549 1.79316 1.27122 1.21657 0.97773 1.39029 1.01714 0.92927 1.25528 1.00668 0.94794 0.95153 1.69742 1.29751 1.45035 1.09794 0.85675 0.78963 0.79129 0.78246 1.20101 1.20289 1.20189 1.23039 0.93498 0.90115 0.98428 0.91516 0.86531 0.92963 0.85949 0.92797 0.86391 0.91467 0.86937 0.91761 0.89880 0.93382 0.77279 0.91922 0.90669 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.48 71.98 0.68 -1.73 16 2 C 0.13 2.62 3.21 44.99 0.14 2.76 16 3 C -0.16 -2.40 9.49 71.98 0.68 -1.72 16 4 N -0.37 -11.01 3.26 -329.03 -1.07 -12.09 16 5 N -0.09 -3.09 13.85 37.02 0.51 -2.58 16 6 N -0.06 -2.23 13.38 37.02 0.50 -1.74 16 7 N -0.39 -15.86 10.68 -58.69 -0.63 -16.49 16 8 C 0.42 15.12 6.94 260.65 1.81 16.93 16 9 N -0.44 -15.89 5.12 -696.99 -3.57 -19.46 16 10 C 0.05 1.71 5.31 86.65 0.46 2.17 16 11 C -0.13 -5.50 5.37 31.78 0.17 -5.33 16 12 C 0.24 11.32 0.87 -10.15 -0.01 11.31 16 13 O -0.58 -27.89 13.16 -148.98 -1.96 -29.85 16 14 C -0.56 -29.22 8.27 25.60 0.21 -29.01 16 15 H 0.05 2.79 7.79 -2.91 -0.02 2.77 16 16 C 0.04 2.03 5.29 84.66 0.45 2.48 16 17 N -0.90 -45.02 10.75 21.45 0.23 -44.79 16 18 Si 0.95 40.96 29.54 68.60 2.03 42.99 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.08 3.24 5.67 86.77 0.49 3.73 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.12 2.27 6.45 -2.39 -0.02 2.25 16 27 H 0.05 0.95 8.07 -2.38 -0.02 0.93 16 28 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.11 3.11 7.88 -2.39 -0.02 3.09 16 31 H 0.06 1.89 7.18 -2.38 -0.02 1.88 16 32 H 0.08 3.53 7.53 -2.38 -0.02 3.51 16 33 H 0.05 2.11 8.03 -2.39 -0.02 2.10 16 34 H 0.38 18.14 7.56 -74.06 -0.56 17.58 16 35 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 36 H 0.08 3.42 6.79 -2.39 -0.02 3.40 16 37 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -58.96 305.40 1.65 -57.30 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.53 Total: 25.11 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 5.09 Total: 1.59 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -4.03 Total: -97.14 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.96 Total: -29.85 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -58.96 1.65 -57.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332939157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.616 kcal (2) G-P(sol) polarization free energy of solvation -58.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds