Wall clock time and date at job start Mon Mar 30 2020 00:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47058 * 2 1 4 4 C 1.36924 * 120.00415 * 263.21003 * 3 2 1 5 5 H 1.07998 * 120.00674 * 209.63632 * 4 3 2 6 6 C 1.38805 * 119.99573 * 29.64615 * 4 3 2 7 7 N 1.31561 * 120.00192 * 355.43443 * 6 4 3 8 8 Si 1.86803 * 119.99701 * 175.44315 * 6 4 3 9 9 H 1.48496 * 109.47607 * 59.99444 * 8 6 4 10 10 H 1.48500 * 109.46923 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46777 * 299.99085 * 8 6 4 12 12 C 1.38228 * 119.99493 * 83.21781 * 3 2 1 13 13 N 1.31561 * 126.46040 * 6.28692 * 12 3 2 14 14 N 1.28421 * 110.49716 * 180.29445 * 13 12 3 15 15 N 1.28904 * 110.35326 * 359.75448 * 14 13 12 16 16 N 1.35443 * 126.45577 * 186.16369 * 12 3 2 17 17 C 1.46498 * 127.38489 * 359.97438 * 16 12 3 18 18 C 1.53001 * 109.47060 * 262.42810 * 17 16 12 19 19 H 1.08995 * 109.98814 * 307.15893 * 18 17 16 20 20 C 1.54105 * 109.87605 * 186.08040 * 18 17 16 21 21 C 1.54814 * 104.18540 * 238.54480 * 20 18 17 22 22 C 1.55004 * 102.12362 * 339.10388 * 21 20 18 23 23 O 1.43738 * 109.87802 * 68.24923 * 18 17 16 24 24 H 1.09003 * 109.47385 * 174.03104 * 1 2 3 25 25 H 1.09006 * 109.46954 * 294.02532 * 1 2 3 26 26 H 1.08998 * 109.47451 * 54.02789 * 1 2 3 27 27 H 1.09005 * 109.46950 * 240.00277 * 2 1 3 28 28 H 1.08996 * 109.47104 * 120.00712 * 2 1 3 29 29 H 0.97002 * 120.00149 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47009 * 142.42924 * 17 16 12 31 31 H 1.09004 * 109.47165 * 22.43148 * 17 16 12 32 32 H 1.08994 * 110.48912 * 119.86712 * 20 18 17 33 33 H 1.08998 * 110.60063 * 357.27538 * 20 18 17 34 34 H 1.09005 * 110.90792 * 97.31266 * 21 20 18 35 35 H 1.09000 * 110.90814 * 220.88720 * 21 20 18 36 36 H 1.09000 * 110.61519 * 155.54279 * 22 21 20 37 37 H 1.09004 * 110.61396 * 278.53786 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3787 1.9800 -1.1774 5 1 3.1432 2.7428 -1.1836 6 6 1.7613 1.6067 -2.3632 7 7 0.8953 0.6163 -2.3706 8 14 2.1604 2.5104 -3.9487 9 1 3.6101 2.3789 -4.2421 10 1 1.3749 1.9236 -5.0640 11 1 1.8135 3.9467 -3.8004 12 6 2.1154 2.0798 1.1888 13 7 1.9166 1.5985 2.3969 14 7 2.0819 2.5166 3.2795 15 7 2.3978 3.6309 2.7136 16 7 2.4353 3.3884 1.3294 17 6 2.7475 4.3470 0.2665 18 6 4.2655 4.4685 0.1190 19 1 4.7171 4.6916 1.0856 20 6 4.6064 5.5837 -0.8885 21 6 5.4298 4.8654 -1.9852 22 6 5.9251 3.5980 -1.2429 23 8 4.8057 3.2425 -0.4017 24 1 -0.3634 -1.0221 -0.1069 25 1 -0.3633 0.4184 0.9387 26 1 -0.3634 0.6036 -0.8317 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.4642 0.3552 -3.1994 30 1 2.3280 5.3205 0.5205 31 1 2.3177 4.0002 -0.6733 32 1 5.2034 6.3603 -0.4104 33 1 3.6967 6.0094 -1.3117 34 1 4.7987 4.5979 -2.8329 35 1 6.2698 5.4810 -2.3069 36 1 6.1429 2.7988 -1.9514 37 1 6.8028 3.8260 -0.6381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332956701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:33 Heat of formation + Delta-G solvation = 101.154661 kcal Electronic energy + Delta-G solvation = -22088.634841 eV Core-core repulsion = 18905.069964 eV Total energy + Delta-G solvation = -3183.564877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34701 -39.26755 -36.80827 -34.01334 -32.20358 -31.95830 -30.17309 -29.90124 -28.92986 -26.05297 -24.42065 -22.47676 -22.25359 -21.41240 -20.72255 -19.94383 -17.96403 -16.35414 -16.17086 -15.93422 -15.25219 -15.05599 -14.61628 -14.43820 -13.83139 -13.49059 -12.84697 -12.68627 -12.55243 -12.15813 -11.84768 -11.74213 -11.61312 -11.38011 -11.23593 -11.08498 -10.93708 -10.79441 -10.64413 -10.53563 -10.18469 -9.89858 -9.86383 -9.42036 -9.19447 -8.95918 -8.67088 -7.18876 -6.46605 -4.06563 2.52625 2.98552 3.00729 3.06624 3.10516 3.85144 3.89176 4.06944 4.63719 4.67011 4.86626 4.89340 4.99597 5.22001 5.36176 5.43396 5.64197 5.73958 5.81726 5.88600 5.94892 6.07209 6.12845 6.24668 6.42881 6.70277 6.79337 6.86374 6.88192 7.02450 7.15754 7.25579 7.32988 7.52852 7.81976 7.97296 8.52774 9.06667 9.33657 10.08094 10.48464 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.012657 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.425130 B = 2211.703336 C = 3780.628623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.157 3.843 3 N -0.398 5.398 4 C -0.333 4.333 5 H 0.131 0.869 6 C 0.035 3.965 7 N -0.861 5.861 8 Si 0.919 3.081 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.271 1.271 12 C 0.481 3.519 13 N -0.420 5.420 14 N -0.038 5.038 15 N -0.163 5.163 16 N -0.431 5.431 17 C 0.126 3.874 18 C 0.059 3.941 19 H 0.070 0.930 20 C -0.147 4.147 21 C -0.156 4.156 22 C 0.044 3.956 23 O -0.344 6.344 24 H 0.037 0.963 25 H 0.022 0.978 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.040 0.960 29 H 0.270 0.730 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 6.808 -4.616 10.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.035 3.965 3 N -0.103 5.103 4 C -0.461 4.461 5 H 0.148 0.852 6 C -0.171 4.171 7 N -0.498 5.498 8 Si 0.745 3.255 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.121 3.879 13 N -0.292 5.292 14 N -0.034 5.034 15 N -0.154 5.154 16 N -0.236 5.236 17 C 0.002 3.998 18 C -0.001 4.001 19 H 0.088 0.912 20 C -0.186 4.186 21 C -0.193 4.193 22 C -0.033 4.033 23 O -0.262 6.262 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.152 0.848 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.633 6.443 -3.556 9.267 hybrid contribution 0.392 0.756 -1.949 2.127 sum 6.025 7.199 -5.505 10.883 Atomic orbital electron populations 1.22236 0.96597 1.00629 1.01097 1.21231 0.94495 0.80447 1.00366 1.41811 1.58346 1.10220 0.99910 1.20553 1.19434 1.23424 0.82727 0.85214 1.25486 0.95140 0.96771 0.99683 1.70154 1.26411 1.25538 1.27708 0.86108 0.78841 0.79676 0.80891 1.19510 1.20651 1.19654 1.21800 0.94101 0.81596 0.90364 1.74614 1.35686 1.23862 0.95043 1.77434 1.07408 0.94662 1.23907 1.82053 1.30141 1.18239 0.84923 1.50335 1.59594 1.07717 1.06000 1.22384 0.93895 0.92340 0.91210 1.23202 0.94816 0.84996 0.97092 0.91217 1.22922 1.01194 0.98106 0.96355 1.23150 1.00134 0.97246 0.98817 1.23540 0.89963 0.96875 0.92930 1.89138 1.45191 1.26954 1.64964 0.94421 0.95937 0.88778 0.88557 0.94211 0.91962 0.89315 0.84754 0.90490 0.90045 0.90344 0.90450 0.88954 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.49 37.16 0.35 -2.96 16 2 C 0.16 3.70 5.42 -4.04 -0.02 3.68 16 3 N -0.40 -9.76 2.71 -116.59 -0.32 -10.08 16 4 C -0.33 -7.83 7.43 -15.07 -0.11 -7.94 16 5 H 0.13 2.89 2.49 -52.49 -0.13 2.76 16 6 C 0.03 0.80 5.34 -17.46 -0.09 0.70 16 7 N -0.86 -20.36 7.85 55.49 0.44 -19.93 16 8 Si 0.92 17.78 29.56 -169.99 -5.02 12.75 16 9 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 10 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 12 C 0.48 11.99 8.34 -320.34 -2.67 9.32 16 13 N -0.42 -10.83 11.63 30.11 0.35 -10.48 16 14 N -0.04 -0.95 13.38 60.35 0.81 -0.15 16 15 N -0.16 -3.87 13.93 60.35 0.84 -3.03 16 16 N -0.43 -9.82 3.68 -61.84 -0.23 -10.05 16 17 C 0.13 2.31 5.35 -4.04 -0.02 2.29 16 18 C 0.06 0.95 3.59 -26.15 -0.09 0.86 16 19 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.15 -1.78 6.64 -25.20 -0.17 -1.95 16 21 C -0.16 -1.85 7.15 -24.72 -0.18 -2.02 16 22 C 0.04 0.61 7.73 38.22 0.30 0.91 16 23 O -0.34 -6.39 8.58 -35.23 -0.30 -6.69 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.09 2.28 5.83 -51.93 -0.30 1.98 16 27 H 0.10 2.33 6.47 -51.93 -0.34 1.99 16 28 H 0.04 0.93 7.81 -51.93 -0.41 0.52 16 29 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.13 2.64 4.92 -51.93 -0.26 2.38 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.91 7.70 -51.93 -0.40 0.51 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -27.97 295.91 -6.46 -34.42 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.77 Total: 5.87 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.71 Total: 2.89 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 1.89 Total: -53.71 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.30 Total: -6.69 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.02 Total: 12.75 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.97 -6.46 -34.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332956701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.579 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds