Wall clock time and date at job start Mon Mar 30 2020 00:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47058 * 2 1 4 4 C 1.36924 * 120.00415 * 263.21003 * 3 2 1 5 5 H 1.07998 * 120.00674 * 209.63632 * 4 3 2 6 6 C 1.38805 * 119.99573 * 29.64615 * 4 3 2 7 7 N 1.31561 * 120.00192 * 355.43443 * 6 4 3 8 8 Si 1.86803 * 119.99701 * 175.44315 * 6 4 3 9 9 H 1.48496 * 109.47607 * 59.99444 * 8 6 4 10 10 H 1.48500 * 109.46923 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46777 * 299.99085 * 8 6 4 12 12 C 1.38228 * 119.99493 * 83.21781 * 3 2 1 13 13 N 1.31561 * 126.46040 * 6.28692 * 12 3 2 14 14 N 1.28421 * 110.49716 * 180.29445 * 13 12 3 15 15 N 1.28904 * 110.35326 * 359.75448 * 14 13 12 16 16 N 1.35443 * 126.45577 * 186.16369 * 12 3 2 17 17 C 1.46498 * 127.38489 * 359.97438 * 16 12 3 18 18 C 1.53001 * 109.47060 * 262.42810 * 17 16 12 19 19 H 1.08995 * 109.98814 * 307.15893 * 18 17 16 20 20 C 1.54105 * 109.87605 * 186.08040 * 18 17 16 21 21 C 1.54814 * 104.18540 * 238.54480 * 20 18 17 22 22 C 1.55004 * 102.12362 * 339.10388 * 21 20 18 23 23 O 1.43738 * 109.87802 * 68.24923 * 18 17 16 24 24 H 1.09003 * 109.47385 * 174.03104 * 1 2 3 25 25 H 1.09006 * 109.46954 * 294.02532 * 1 2 3 26 26 H 1.08998 * 109.47451 * 54.02789 * 1 2 3 27 27 H 1.09005 * 109.46950 * 240.00277 * 2 1 3 28 28 H 1.08996 * 109.47104 * 120.00712 * 2 1 3 29 29 H 0.97002 * 120.00149 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47009 * 142.42924 * 17 16 12 31 31 H 1.09004 * 109.47165 * 22.43148 * 17 16 12 32 32 H 1.08994 * 110.48912 * 119.86712 * 20 18 17 33 33 H 1.08998 * 110.60063 * 357.27538 * 20 18 17 34 34 H 1.09005 * 110.90792 * 97.31266 * 21 20 18 35 35 H 1.09000 * 110.90814 * 220.88720 * 21 20 18 36 36 H 1.09000 * 110.61519 * 155.54279 * 22 21 20 37 37 H 1.09004 * 110.61396 * 278.53786 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3787 1.9800 -1.1774 5 1 3.1432 2.7428 -1.1836 6 6 1.7613 1.6067 -2.3632 7 7 0.8953 0.6163 -2.3706 8 14 2.1604 2.5104 -3.9487 9 1 3.6101 2.3789 -4.2421 10 1 1.3749 1.9236 -5.0640 11 1 1.8135 3.9467 -3.8004 12 6 2.1154 2.0798 1.1888 13 7 1.9166 1.5985 2.3969 14 7 2.0819 2.5166 3.2795 15 7 2.3978 3.6309 2.7136 16 7 2.4353 3.3884 1.3294 17 6 2.7475 4.3470 0.2665 18 6 4.2655 4.4685 0.1190 19 1 4.7171 4.6916 1.0856 20 6 4.6064 5.5837 -0.8885 21 6 5.4298 4.8654 -1.9852 22 6 5.9251 3.5980 -1.2429 23 8 4.8057 3.2425 -0.4017 24 1 -0.3634 -1.0221 -0.1069 25 1 -0.3633 0.4184 0.9387 26 1 -0.3634 0.6036 -0.8317 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.4642 0.3552 -3.1994 30 1 2.3280 5.3205 0.5205 31 1 2.3177 4.0002 -0.6733 32 1 5.2034 6.3603 -0.4104 33 1 3.6967 6.0094 -1.3117 34 1 4.7987 4.5979 -2.8329 35 1 6.2698 5.4810 -2.3069 36 1 6.1429 2.7988 -1.9514 37 1 6.8028 3.8260 -0.6381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332956701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:33 Heat of formation + Delta-G solvation = 86.120366 kcal Electronic energy + Delta-G solvation = -22089.286777 eV Core-core repulsion = 18905.069964 eV Total energy + Delta-G solvation = -3184.216813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.20119 -40.48087 -38.62668 -35.65293 -33.99974 -33.07112 -32.03778 -31.34889 -30.73215 -27.53711 -26.06644 -24.28658 -23.78270 -22.75163 -21.93361 -21.79970 -19.71151 -17.95629 -17.74995 -17.30430 -16.78612 -16.40080 -16.18501 -16.07911 -15.50270 -14.68908 -14.50689 -14.35746 -13.91341 -13.86839 -13.52413 -13.45092 -12.85505 -12.78333 -12.69964 -12.55048 -12.45159 -12.17557 -12.09615 -11.86799 -11.74068 -11.66715 -11.43667 -11.27829 -10.93680 -10.55606 -10.30186 -9.04124 -8.22367 -5.87835 0.67390 1.31755 1.47650 1.49369 1.56898 1.96476 2.26163 2.84922 2.96073 3.13611 3.62060 3.72288 3.91431 3.96486 4.15382 4.23539 4.36200 4.48654 4.52226 4.65487 4.81145 4.83885 4.85117 4.93971 4.94959 4.98521 5.09173 5.15506 5.20898 5.22214 5.39897 5.53210 5.73516 5.93396 6.04978 6.18395 6.71657 7.25615 7.51508 8.18873 8.72906 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.012657 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.425130 B = 2211.703336 C = 3780.628623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.161 3.839 3 N -0.405 5.405 4 C -0.351 4.351 5 H 0.144 0.856 6 C -0.002 4.002 7 N -0.881 5.881 8 Si 0.976 3.024 9 H -0.261 1.261 10 H -0.287 1.287 11 H -0.256 1.256 12 C 0.462 3.538 13 N -0.442 5.442 14 N -0.054 5.054 15 N -0.158 5.158 16 N -0.426 5.426 17 C 0.115 3.885 18 C 0.060 3.940 19 H 0.060 0.940 20 C -0.138 4.138 21 C -0.149 4.149 22 C 0.034 3.966 23 O -0.386 6.386 24 H 0.056 0.944 25 H 0.009 0.991 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.270 0.730 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 8.746 -6.208 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 N -0.110 5.110 4 C -0.479 4.479 5 H 0.160 0.840 6 C -0.206 4.206 7 N -0.518 5.518 8 Si 0.799 3.201 9 H -0.185 1.185 10 H -0.213 1.213 11 H -0.180 1.180 12 C 0.102 3.898 13 N -0.315 5.315 14 N -0.050 5.050 15 N -0.148 5.148 16 N -0.232 5.232 17 C -0.007 4.007 18 C 0.001 3.999 19 H 0.078 0.922 20 C -0.177 4.177 21 C -0.186 4.186 22 C -0.042 4.042 23 O -0.305 6.305 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.625 8.401 -5.145 11.872 hybrid contribution 0.109 0.131 -1.462 1.471 sum 6.734 8.532 -6.606 12.720 Atomic orbital electron populations 1.22061 0.95847 1.01427 0.99618 1.21171 0.95007 0.80441 0.99559 1.42017 1.58340 1.10396 1.00200 1.21000 1.20239 1.24050 0.82574 0.83957 1.26270 0.94820 0.97193 1.02294 1.70259 1.26873 1.26292 1.28386 0.85220 0.78929 0.79214 0.76721 1.18526 1.21274 1.18008 1.21894 0.95010 0.82612 0.90291 1.74508 1.36569 1.24738 0.95714 1.77389 1.08434 0.94936 1.24204 1.81925 1.29262 1.17945 0.85699 1.50572 1.58804 1.07661 1.06182 1.22749 0.95994 0.92444 0.89486 1.23205 0.92726 0.85985 0.98024 0.92220 1.22938 1.02297 0.97084 0.95332 1.23148 1.01005 0.96410 0.98057 1.23775 0.89405 0.98067 0.92945 1.89081 1.46817 1.28739 1.65889 0.92460 0.97141 0.90249 0.89409 0.94697 0.91976 0.86566 0.85810 0.87817 0.88811 0.91104 0.87176 0.89207 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 9.49 71.98 0.68 -5.27 16 2 C 0.16 7.70 5.42 86.38 0.47 8.17 16 3 N -0.40 -20.04 2.71 -522.78 -1.42 -21.46 16 4 C -0.35 -16.39 7.43 84.03 0.62 -15.77 16 5 H 0.14 6.22 2.49 -2.91 -0.01 6.21 16 6 C 0.00 -0.11 5.34 84.87 0.45 0.34 16 7 N -0.88 -41.55 7.85 21.65 0.17 -41.38 16 8 Si 0.98 35.04 29.56 68.60 2.03 37.07 16 9 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 10 H -0.29 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 12 C 0.46 23.25 8.34 260.63 2.17 25.42 16 13 N -0.44 -23.21 11.63 -58.67 -0.68 -23.90 16 14 N -0.05 -2.71 13.38 37.02 0.50 -2.21 16 15 N -0.16 -7.45 13.93 37.02 0.52 -6.93 16 16 N -0.43 -19.27 3.68 -349.58 -1.29 -20.56 16 17 C 0.12 4.08 5.35 86.38 0.46 4.54 16 18 C 0.06 1.84 3.59 30.97 0.11 1.95 16 19 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 20 C -0.14 -2.82 6.64 31.59 0.21 -2.61 16 21 C -0.15 -2.97 7.15 31.90 0.23 -2.74 16 22 C 0.03 0.88 7.73 72.67 0.56 1.44 16 23 O -0.39 -13.90 8.58 -148.98 -1.28 -15.18 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.01 0.45 8.14 -2.38 -0.02 0.44 16 26 H 0.08 3.88 5.83 -2.39 -0.01 3.87 16 27 H 0.09 4.32 6.47 -2.38 -0.02 4.31 16 28 H 0.03 1.67 7.81 -2.39 -0.02 1.65 16 29 H 0.27 12.19 8.31 -92.71 -0.77 11.42 16 30 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.12 4.70 4.92 -2.39 -0.01 4.69 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.70 7.70 -2.39 -0.02 1.69 16 34 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -60.30 295.91 5.61 -54.69 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.09 Total: 24.37 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.97 Total: 15.48 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -2.21 Total: -116.44 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.28 Total: -15.18 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Total: -60.30 5.61 -54.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332956701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.815 kcal (2) G-P(sol) polarization free energy of solvation -60.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds