Wall clock time and date at job start Mon Mar 30 2020 00:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46767 * 2 1 4 4 C 1.36928 * 120.00487 * 264.61712 * 3 2 1 5 5 H 1.07993 * 119.99898 * 127.74371 * 4 3 2 6 6 C 1.38804 * 119.99904 * 307.74522 * 4 3 2 7 7 N 1.31570 * 119.99935 * 358.29100 * 6 4 3 8 8 Si 1.86794 * 120.00107 * 178.29167 * 6 4 3 9 9 H 1.48500 * 109.47088 * 89.99990 * 8 6 4 10 10 H 1.48500 * 109.47487 * 209.99985 * 8 6 4 11 11 H 1.48501 * 109.47090 * 330.00036 * 8 6 4 12 12 C 1.38229 * 119.99538 * 84.61836 * 3 2 1 13 13 N 1.31564 * 126.45671 * 354.03253 * 12 3 2 14 14 N 1.28420 * 110.49517 * 180.02562 * 13 12 3 15 15 N 1.28900 * 110.35551 * 359.97438 * 14 13 12 16 16 N 1.35435 * 126.45335 * 173.72242 * 12 3 2 17 17 C 1.46498 * 127.39281 * 0.02562 * 16 12 3 18 18 C 1.52996 * 109.47190 * 277.60587 * 17 16 12 19 19 H 1.09007 * 110.45786 * 51.38527 * 18 17 16 20 20 C 1.54509 * 110.51241 * 173.98540 * 18 17 16 21 21 C 1.54481 * 104.06012 * 118.64512 * 20 18 17 22 22 O 1.44422 * 104.80551 * 23.98191 * 21 20 18 23 23 C 1.44426 * 105.27378 * 319.48885 * 22 21 20 24 24 H 1.08997 * 109.47294 * 59.99945 * 1 2 3 25 25 H 1.08996 * 109.46943 * 299.99458 * 1 2 3 26 26 H 1.09007 * 109.46725 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47816 * 119.99991 * 2 1 3 28 28 H 1.09000 * 109.47406 * 240.00714 * 2 1 3 29 29 H 0.96998 * 119.99451 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47051 * 37.60638 * 17 16 12 31 31 H 1.09000 * 109.47383 * 157.60253 * 17 16 12 32 32 H 1.08997 * 110.51582 * 237.29080 * 20 18 17 33 33 H 1.08997 * 110.51087 * 359.86783 * 20 18 17 34 34 H 1.09005 * 110.37100 * 142.81264 * 21 20 18 35 35 H 1.09002 * 110.37694 * 265.14880 * 21 20 18 36 36 H 1.09006 * 110.36788 * 281.67770 * 23 22 21 37 37 H 1.09002 * 110.37466 * 159.34591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3513 1.9898 -1.1805 5 1 1.9284 2.9515 -1.4304 6 6 3.2326 1.3705 -2.0561 7 7 3.7738 0.2146 -1.7366 8 14 3.6500 2.1781 -3.6879 9 1 4.8316 3.0608 -3.5153 10 1 3.9576 1.1305 -4.6944 11 1 2.4927 2.9851 -4.1512 12 6 2.1427 2.0702 1.1919 13 7 1.7595 1.6535 2.3795 14 7 2.0216 2.5382 3.2726 15 7 2.5815 3.5668 2.7341 16 7 2.6874 3.2991 1.3580 17 6 3.2602 4.1653 0.3247 18 6 4.7021 3.7384 0.0431 19 1 4.7506 2.6677 -0.1558 20 6 5.2805 4.5366 -1.1467 21 6 6.4785 5.3000 -0.5396 22 8 6.8616 4.5253 0.6176 23 6 5.6191 4.1138 1.2282 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 4.3899 -0.2179 -2.3483 30 1 2.6711 4.0801 -0.5884 31 1 3.2481 5.1992 0.6696 32 1 5.6171 3.8606 -1.9327 33 1 4.5384 5.2337 -1.5358 34 1 7.3004 5.3464 -1.2542 35 1 6.1769 6.3040 -0.2412 36 1 5.1857 4.9360 1.7977 37 1 5.7807 3.2490 1.8718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332996266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:36 Heat of formation + Delta-G solvation = 79.424320 kcal Electronic energy + Delta-G solvation = -21876.455888 eV Core-core repulsion = 18691.948713 eV Total energy + Delta-G solvation = -3184.507175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52937 -39.14324 -36.85672 -34.57408 -32.49243 -31.63898 -30.56658 -29.23766 -28.84159 -26.33900 -24.64788 -22.84021 -22.42740 -21.70145 -20.36678 -19.86963 -17.93381 -16.54261 -16.02517 -15.73009 -15.41985 -14.99922 -14.88529 -14.65361 -14.03392 -13.64319 -13.01533 -12.79369 -12.63213 -12.39006 -12.03612 -11.92014 -11.70691 -11.28003 -11.19289 -11.09311 -11.03661 -10.93570 -10.66049 -10.53834 -10.17560 -10.06838 -9.78196 -9.57386 -9.53247 -9.17224 -9.03067 -7.13219 -6.61613 -4.55612 2.40220 2.87963 2.90989 3.00219 3.01968 3.70982 3.80309 4.21131 4.53217 4.66211 4.91323 5.03008 5.16148 5.24349 5.44650 5.54660 5.78218 5.86655 5.91412 5.92091 6.01753 6.07868 6.14117 6.24652 6.26644 6.32670 6.58180 6.65305 6.72916 6.84250 6.87168 7.02228 7.05020 7.18650 7.35367 7.88661 8.30323 8.83604 9.21846 9.92263 10.33772 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.011460 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.213271 B = 2442.762475 C = 3976.037483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 N -0.405 5.405 4 C -0.338 4.338 5 H 0.084 0.916 6 C 0.059 3.941 7 N -0.851 5.851 8 Si 0.905 3.095 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.266 1.266 12 C 0.487 3.513 13 N -0.416 5.416 14 N -0.040 5.040 15 N -0.152 5.152 16 N -0.426 5.426 17 C 0.151 3.849 18 C -0.130 4.130 19 H 0.108 0.892 20 C -0.149 4.149 21 C 0.045 3.955 22 O -0.380 6.380 23 C 0.055 3.945 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.275 0.725 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 5.589 -3.946 6.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 N -0.113 5.113 4 C -0.467 4.467 5 H 0.101 0.899 6 C -0.151 4.151 7 N -0.485 5.485 8 Si 0.730 3.270 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.190 1.190 12 C 0.127 3.873 13 N -0.287 5.287 14 N -0.036 5.036 15 N -0.142 5.142 16 N -0.230 5.230 17 C 0.028 3.972 18 C -0.150 4.150 19 H 0.126 0.874 20 C -0.187 4.187 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.022 4.022 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.556 5.403 -2.767 6.267 hybrid contribution 0.263 0.468 -1.998 2.069 sum 1.819 5.872 -4.765 7.778 Atomic orbital electron populations 1.22171 0.98090 1.00498 1.01467 1.21371 0.91640 0.82005 1.03295 1.41418 1.59940 1.11437 0.98489 1.19190 1.26850 1.06511 0.94167 0.89893 1.25635 0.93947 0.95762 0.99711 1.69877 1.27122 1.14624 1.36831 0.86321 0.79752 0.79588 0.81295 1.18676 1.20460 1.19035 1.22430 0.90358 0.84155 0.90322 1.74660 1.33960 1.24526 0.95519 1.77499 1.06690 0.95989 1.23407 1.82139 1.26270 1.20182 0.85619 1.50612 1.49841 1.15457 1.07138 1.21873 0.93632 0.91881 0.89793 1.22932 0.94023 1.03691 0.94369 0.87358 1.23025 0.97673 0.99443 0.98570 1.23389 0.97270 0.94495 0.87992 1.89087 1.28370 1.71045 1.41373 1.23477 0.83878 0.99562 0.95240 0.93061 0.93096 0.92999 0.92632 0.87985 0.91424 0.86945 0.90302 0.89878 0.90486 0.89555 0.92582 0.92084 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.21 37.16 0.38 -2.65 16 2 C 0.14 3.00 5.68 -4.04 -0.02 2.98 16 3 N -0.41 -9.18 2.53 -116.59 -0.29 -9.48 16 4 C -0.34 -7.41 6.38 -15.07 -0.10 -7.50 16 5 H 0.08 1.77 5.86 -52.49 -0.31 1.46 16 6 C 0.06 1.29 4.75 -17.45 -0.08 1.20 16 7 N -0.85 -19.88 11.54 55.49 0.64 -19.24 16 8 Si 0.91 16.72 29.34 -169.99 -4.99 11.73 16 9 H -0.26 -4.54 5.47 56.52 0.31 -4.23 16 10 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 12 C 0.49 11.33 8.34 -320.35 -2.67 8.66 16 13 N -0.42 -10.06 11.71 30.10 0.35 -9.70 16 14 N -0.04 -0.94 13.38 60.35 0.81 -0.13 16 15 N -0.15 -3.40 13.93 60.35 0.84 -2.56 16 16 N -0.43 -9.09 3.60 -61.85 -0.22 -9.32 16 17 C 0.15 2.67 4.81 -4.04 -0.02 2.66 16 18 C -0.13 -2.28 3.00 -89.06 -0.27 -2.55 16 19 H 0.11 2.32 7.04 -51.93 -0.37 1.95 16 20 C -0.15 -2.20 6.74 -25.16 -0.17 -2.36 16 21 C 0.05 0.62 7.63 37.93 0.29 0.91 16 22 O -0.38 -6.54 11.65 -35.23 -0.41 -6.95 16 23 C 0.06 0.96 7.10 37.93 0.27 1.23 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.23 7.91 -51.93 -0.41 0.82 16 28 H 0.10 2.29 6.07 -51.93 -0.32 1.97 16 29 H 0.28 6.16 8.31 -40.82 -0.34 5.82 16 30 H 0.11 1.98 4.96 -51.93 -0.26 1.72 16 31 H 0.08 1.22 7.93 -51.93 -0.41 0.80 16 32 H 0.08 1.32 6.25 -51.93 -0.32 0.99 16 33 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.01 7.73 -51.93 -0.40 0.61 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -25.85 300.64 -6.10 -31.95 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.96 Total: 6.60 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.39 Total: 2.57 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 2.12 Total: -50.43 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.41 Total: -6.95 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -4.99 Total: 11.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.85 -6.10 -31.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332996266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.372 kcal (2) G-P(sol) polarization free energy of solvation -25.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds