Wall clock time and date at job start Mon Mar 30 2020 00:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46767 * 2 1 4 4 C 1.36928 * 120.00487 * 264.61712 * 3 2 1 5 5 H 1.07993 * 119.99898 * 127.74371 * 4 3 2 6 6 C 1.38804 * 119.99904 * 307.74522 * 4 3 2 7 7 N 1.31570 * 119.99935 * 358.29100 * 6 4 3 8 8 Si 1.86794 * 120.00107 * 178.29167 * 6 4 3 9 9 H 1.48500 * 109.47088 * 89.99990 * 8 6 4 10 10 H 1.48500 * 109.47487 * 209.99985 * 8 6 4 11 11 H 1.48501 * 109.47090 * 330.00036 * 8 6 4 12 12 C 1.38229 * 119.99538 * 84.61836 * 3 2 1 13 13 N 1.31564 * 126.45671 * 354.03253 * 12 3 2 14 14 N 1.28420 * 110.49517 * 180.02562 * 13 12 3 15 15 N 1.28900 * 110.35551 * 359.97438 * 14 13 12 16 16 N 1.35435 * 126.45335 * 173.72242 * 12 3 2 17 17 C 1.46498 * 127.39281 * 0.02562 * 16 12 3 18 18 C 1.52996 * 109.47190 * 277.60587 * 17 16 12 19 19 H 1.09007 * 110.45786 * 51.38527 * 18 17 16 20 20 C 1.54509 * 110.51241 * 173.98540 * 18 17 16 21 21 C 1.54481 * 104.06012 * 118.64512 * 20 18 17 22 22 O 1.44422 * 104.80551 * 23.98191 * 21 20 18 23 23 C 1.44426 * 105.27378 * 319.48885 * 22 21 20 24 24 H 1.08997 * 109.47294 * 59.99945 * 1 2 3 25 25 H 1.08996 * 109.46943 * 299.99458 * 1 2 3 26 26 H 1.09007 * 109.46725 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47816 * 119.99991 * 2 1 3 28 28 H 1.09000 * 109.47406 * 240.00714 * 2 1 3 29 29 H 0.96998 * 119.99451 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47051 * 37.60638 * 17 16 12 31 31 H 1.09000 * 109.47383 * 157.60253 * 17 16 12 32 32 H 1.08997 * 110.51582 * 237.29080 * 20 18 17 33 33 H 1.08997 * 110.51087 * 359.86783 * 20 18 17 34 34 H 1.09005 * 110.37100 * 142.81264 * 21 20 18 35 35 H 1.09002 * 110.37694 * 265.14880 * 21 20 18 36 36 H 1.09006 * 110.36788 * 281.67770 * 23 22 21 37 37 H 1.09002 * 110.37466 * 159.34591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3513 1.9898 -1.1805 5 1 1.9284 2.9515 -1.4304 6 6 3.2326 1.3705 -2.0561 7 7 3.7738 0.2146 -1.7366 8 14 3.6500 2.1781 -3.6879 9 1 4.8316 3.0608 -3.5153 10 1 3.9576 1.1305 -4.6944 11 1 2.4927 2.9851 -4.1512 12 6 2.1427 2.0702 1.1919 13 7 1.7595 1.6535 2.3795 14 7 2.0216 2.5382 3.2726 15 7 2.5815 3.5668 2.7341 16 7 2.6874 3.2991 1.3580 17 6 3.2602 4.1653 0.3247 18 6 4.7021 3.7384 0.0431 19 1 4.7506 2.6677 -0.1558 20 6 5.2805 4.5366 -1.1467 21 6 6.4785 5.3000 -0.5396 22 8 6.8616 4.5253 0.6176 23 6 5.6191 4.1138 1.2282 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 4.3899 -0.2179 -2.3483 30 1 2.6711 4.0801 -0.5884 31 1 3.2481 5.1992 0.6696 32 1 5.6171 3.8606 -1.9327 33 1 4.5384 5.2337 -1.5358 34 1 7.3004 5.3464 -1.2542 35 1 6.1769 6.3040 -0.2412 36 1 5.1857 4.9360 1.7977 37 1 5.7807 3.2490 1.8718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332996266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:35 Heat of formation + Delta-G solvation = 65.654817 kcal Electronic energy + Delta-G solvation = -21877.052979 eV Core-core repulsion = 18691.948713 eV Total energy + Delta-G solvation = -3185.104265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.29197 -40.44506 -38.56267 -36.11004 -34.20160 -33.10262 -32.28446 -30.79656 -30.26142 -27.89546 -26.28801 -24.33174 -23.98357 -23.25036 -21.94729 -21.38065 -19.62105 -18.04768 -17.57018 -17.29679 -17.00523 -16.51684 -16.26875 -16.12547 -15.60678 -15.04740 -14.64430 -14.37656 -14.10692 -13.83455 -13.61921 -13.47995 -13.16169 -12.84820 -12.68444 -12.62113 -12.48468 -12.23546 -12.14368 -11.99203 -11.82539 -11.55028 -11.45801 -11.28176 -10.89156 -10.79831 -10.64209 -8.87105 -8.30775 -6.29577 0.63504 1.27379 1.43345 1.49276 1.57436 1.92099 2.23727 2.86199 2.97368 3.01632 3.55514 3.69981 3.87782 3.96433 4.17071 4.24840 4.32119 4.38809 4.48648 4.52661 4.63444 4.69378 4.76467 4.81125 4.88993 4.92269 5.04851 5.09016 5.10997 5.21875 5.31294 5.36146 5.52383 5.69567 5.79817 6.17952 6.57708 7.12412 7.48901 8.13499 8.66035 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.011460 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.213271 B = 2442.762475 C = 3976.037483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.142 3.858 3 N -0.411 5.411 4 C -0.344 4.344 5 H 0.093 0.907 6 C 0.030 3.970 7 N -0.885 5.885 8 Si 0.957 3.043 9 H -0.241 1.241 10 H -0.291 1.291 11 H -0.256 1.256 12 C 0.471 3.529 13 N -0.436 5.436 14 N -0.055 5.055 15 N -0.147 5.147 16 N -0.421 5.421 17 C 0.147 3.853 18 C -0.123 4.123 19 H 0.065 0.935 20 C -0.144 4.144 21 C 0.043 3.957 22 O -0.400 6.400 23 C 0.062 3.938 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.274 0.726 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 7.650 -5.474 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 N -0.119 5.119 4 C -0.472 4.472 5 H 0.110 0.890 6 C -0.177 4.177 7 N -0.519 5.519 8 Si 0.779 3.221 9 H -0.166 1.166 10 H -0.217 1.217 11 H -0.179 1.179 12 C 0.110 3.890 13 N -0.307 5.307 14 N -0.052 5.052 15 N -0.137 5.137 16 N -0.226 5.226 17 C 0.025 3.975 18 C -0.143 4.143 19 H 0.084 0.916 20 C -0.182 4.182 21 C -0.033 4.033 22 O -0.320 6.320 23 C -0.015 4.015 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.618 7.486 -4.292 8.780 hybrid contribution 0.281 -0.183 -1.524 1.560 sum 1.899 7.303 -5.815 9.527 Atomic orbital electron populations 1.22028 0.95707 1.02133 1.00881 1.21340 0.93490 0.81505 1.01839 1.41675 1.59969 1.11678 0.98596 1.19455 1.27047 1.06905 0.93778 0.89007 1.26292 0.93273 0.95747 1.02352 1.69994 1.27843 1.16072 1.37976 0.85534 0.80515 0.78846 0.77182 1.16558 1.21696 1.17949 1.22576 0.90985 0.85058 0.90345 1.74572 1.34754 1.25213 0.96116 1.77464 1.07603 0.96358 1.23737 1.82024 1.25515 1.19848 0.86316 1.50820 1.49262 1.15315 1.07201 1.22181 0.93401 0.92737 0.89157 1.22747 0.94139 1.01556 0.95898 0.91638 1.23036 0.98724 0.99498 0.96979 1.23653 0.97563 0.94955 0.87116 1.89069 1.28341 1.71845 1.42722 1.23320 0.84228 0.98922 0.95026 0.92851 0.94221 0.90307 0.94261 0.89139 0.91626 0.86549 0.87292 0.90964 0.87554 0.87591 0.89884 0.90920 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.21 71.98 0.74 -4.69 16 2 C 0.14 6.13 5.68 86.38 0.49 6.62 16 3 N -0.41 -18.72 2.53 -522.78 -1.32 -20.04 16 4 C -0.34 -14.79 6.38 84.03 0.54 -14.26 16 5 H 0.09 3.74 5.86 -2.91 -0.02 3.73 16 6 C 0.03 1.29 4.75 84.87 0.40 1.69 16 7 N -0.88 -41.79 11.54 21.65 0.25 -41.54 16 8 Si 0.96 32.77 29.34 68.60 2.01 34.78 16 9 H -0.24 -7.45 5.47 99.48 0.54 -6.91 16 10 H -0.29 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.26 -8.32 7.11 99.48 0.71 -7.62 16 12 C 0.47 21.99 8.34 260.63 2.17 24.17 16 13 N -0.44 -21.33 11.71 -58.67 -0.69 -22.02 16 14 N -0.06 -2.64 13.38 37.02 0.50 -2.15 16 15 N -0.15 -6.50 13.93 37.02 0.52 -5.99 16 16 N -0.42 -17.69 3.60 -349.60 -1.26 -18.95 16 17 C 0.15 4.89 4.81 86.38 0.42 5.30 16 18 C -0.12 -4.15 3.00 -9.78 -0.03 -4.18 16 19 H 0.07 2.82 7.04 -2.38 -0.02 2.80 16 20 C -0.14 -3.79 6.74 31.61 0.21 -3.58 16 21 C 0.04 1.03 7.63 72.49 0.55 1.58 16 22 O -0.40 -13.09 11.65 -148.98 -1.74 -14.82 16 23 C 0.06 2.09 7.10 72.48 0.51 2.61 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.04 1.79 7.91 -2.39 -0.02 1.77 16 28 H 0.09 4.13 6.07 -2.39 -0.01 4.12 16 29 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 30 H 0.12 3.81 4.96 -2.39 -0.01 3.80 16 31 H 0.11 2.98 7.93 -2.39 -0.02 2.97 16 32 H 0.07 2.08 6.25 -2.39 -0.01 2.06 16 33 H 0.11 2.18 7.73 -2.39 -0.02 2.16 16 34 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.27 7.73 -2.38 -0.02 2.25 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -56.04 300.64 5.20 -50.84 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.92 Total: 24.61 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.01 Total: 15.27 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -2.01 Total: -110.68 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -1.74 Total: -14.82 kcal Atomic # 14 Polarization: 32.77 SS G_CDS: 2.01 Total: 34.78 kcal Total: -56.04 5.20 -50.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332996266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.498 kcal (2) G-P(sol) polarization free energy of solvation -56.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds