Wall clock time and date at job start Mon Mar 30 2020 00:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99931 * 2 1 4 4 C 1.34773 * 119.99973 * 179.97438 * 2 1 3 5 5 O 1.21588 * 120.00151 * 359.73121 * 4 2 1 6 6 N 1.34784 * 119.99935 * 180.02562 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72905 * 6 4 2 8 8 C 1.50699 * 109.46700 * 180.02562 * 7 6 4 9 9 C 1.35351 * 126.75692 * 94.71126 * 8 7 6 10 10 N 1.35313 * 106.17914 * 179.84733 * 9 8 7 11 11 C 1.46495 * 125.86753 * 180.11515 * 10 9 8 12 12 C 1.53000 * 109.46926 * 125.33183 * 11 10 9 13 13 C 1.50703 * 109.47209 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99789 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00070 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00176 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47027 * 59.99648 * 17 15 13 19 19 H 1.48496 * 109.47398 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46875 * 300.00164 * 17 15 13 21 21 N 1.28722 * 108.26119 * 0.41861 * 10 9 8 22 22 N 1.28636 * 110.17653 * 359.73556 * 21 10 9 23 23 H 1.08997 * 109.47506 * 270.00051 * 1 2 3 24 24 H 1.09003 * 109.47023 * 30.00279 * 1 2 3 25 25 H 1.09002 * 109.46896 * 149.99872 * 1 2 3 26 26 H 1.09000 * 109.47191 * 269.99858 * 3 2 1 27 27 H 1.09004 * 109.46976 * 30.00047 * 3 2 1 28 28 H 1.08998 * 109.47074 * 149.99450 * 3 2 1 29 29 H 0.97005 * 119.99846 * 359.72693 * 6 4 2 30 30 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 31 31 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 32 32 H 1.08000 * 126.90979 * 359.97438 * 9 8 7 33 33 H 1.09005 * 109.47280 * 245.32964 * 11 10 9 34 34 H 1.08993 * 109.47436 * 5.33325 * 11 10 9 35 35 H 1.09005 * 109.46962 * 299.99975 * 12 11 10 36 36 H 1.09002 * 109.47691 * 59.99727 * 12 11 10 37 37 H 0.97004 * 119.99758 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5309 -2.2202 0.0059 6 7 3.4867 -1.1672 0.0010 7 6 4.2191 -2.4359 0.0076 8 6 5.7007 -2.1604 0.0075 9 6 6.5125 -2.0948 1.0885 10 7 7.7518 -1.8305 0.6140 11 6 8.9643 -1.6725 1.4209 12 6 10.0411 -2.6356 0.9171 13 6 11.2882 -2.4736 1.7475 14 1 11.3106 -1.7553 2.5536 15 6 12.4005 -3.2424 1.4781 16 7 12.3731 -4.1176 0.4968 17 14 13.9467 -3.0411 2.5070 18 1 13.6382 -3.3420 3.9281 19 1 14.9914 -3.9768 2.0190 20 1 14.4392 -1.6450 2.3923 21 7 7.6811 -1.7353 -0.6678 22 7 6.4713 -1.9269 -1.0608 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 2.3792 1.5834 -1.0277 27 1 1.6083 2.0284 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.9717 -0.3271 -0.0030 30 1 3.9555 -3.0030 0.9003 31 1 3.9562 -3.0119 -0.8796 32 1 6.2286 -2.2287 2.1219 33 1 9.3256 -0.6475 1.3370 34 1 8.7381 -1.8939 2.4638 35 1 9.6798 -3.6606 1.0009 36 1 10.2674 -2.4143 -0.1260 37 1 13.1556 -4.6587 0.3075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333938001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:12 Heat of formation + Delta-G solvation = 69.858923 kcal Electronic energy + Delta-G solvation = -19426.407734 eV Core-core repulsion = 16241.485772 eV Total energy + Delta-G solvation = -3184.921962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.94401 -40.21133 -35.95100 -35.46578 -34.69051 -32.90107 -31.22972 -30.04059 -28.37010 -27.08428 -25.62758 -25.09412 -22.52785 -21.57489 -20.33454 -20.20641 -18.34325 -17.19205 -16.62684 -16.16749 -16.05605 -15.78145 -14.75386 -14.59437 -14.48129 -14.34407 -13.91752 -13.65984 -13.09607 -12.96096 -12.77636 -12.61963 -12.42900 -12.21578 -11.77361 -11.29327 -11.14454 -10.92067 -10.70077 -10.43722 -10.33576 -10.09838 -9.51238 -9.41833 -9.27590 -9.03879 -8.77533 -8.56780 -6.20846 -4.28329 1.87973 2.34928 2.83489 2.90496 3.06237 3.21429 3.27452 3.28455 3.87340 4.28850 4.44112 4.71029 4.86993 4.94050 5.02175 5.13852 5.15520 5.24724 5.30396 5.33862 5.51877 5.59588 5.74977 5.80526 6.10345 6.14908 6.23169 6.32677 6.36209 6.67334 6.89791 7.34089 7.43635 7.73026 7.74426 8.04762 8.42774 8.76601 8.86044 9.37599 10.90051 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.054143 B = 0.002873 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.026434 B = 9742.074504 C = 9900.382750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.640 5.640 3 C 0.079 3.921 4 C 0.706 3.294 5 O -0.590 6.590 6 N -0.738 5.738 7 C 0.233 3.767 8 C -0.062 4.062 9 C -0.035 4.035 10 N -0.269 5.269 11 C 0.110 3.890 12 C 0.015 3.985 13 C -0.535 4.535 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.068 5.068 22 N -0.271 5.271 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.398 0.602 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.187 0.813 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.024 0.976 36 H 0.038 0.962 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.064 10.370 2.689 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.379 5.379 3 C -0.064 4.064 4 C 0.407 3.593 5 O -0.469 6.469 6 N -0.395 5.395 7 C 0.107 3.893 8 C -0.201 4.201 9 C -0.189 4.189 10 N -0.061 5.061 11 C -0.008 4.008 12 C -0.023 4.023 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.048 5.048 22 N -0.138 5.138 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.204 0.796 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.557 9.706 1.303 20.982 hybrid contribution 0.789 0.341 1.672 1.880 sum -17.767 10.047 2.975 20.627 Atomic orbital electron populations 1.21490 0.77817 1.02991 1.01576 1.46891 1.07067 1.04878 1.79073 1.21734 0.97040 0.85699 1.01945 1.15811 0.81723 0.83820 0.77942 1.90923 1.67815 1.29925 1.58204 1.45321 1.04441 1.10003 1.79747 1.19119 0.82078 0.84571 1.03491 1.21736 0.97212 1.11236 0.89960 1.23448 0.85218 1.08555 1.01657 1.48022 1.09519 1.41998 1.06568 1.22802 0.80981 1.03992 0.93062 1.19408 0.91055 0.93360 0.98467 1.20881 0.96999 1.22620 1.16826 0.92144 1.25004 0.99001 0.94832 0.95195 1.69964 1.30337 1.22915 1.29071 0.86526 0.82244 0.78172 0.80315 1.20066 1.21081 1.19999 1.78384 1.14363 1.18695 0.93387 1.75083 0.96634 1.15995 1.26041 0.93077 0.91441 0.90424 0.92469 0.90728 0.91465 0.76650 0.89892 0.89847 0.79615 0.89042 0.88608 0.95749 0.94377 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 10.43 59.84 0.62 1.43 16 2 N -0.64 -6.11 3.27 -195.33 -0.64 -6.75 16 3 C 0.08 0.49 10.20 59.85 0.61 1.10 16 4 C 0.71 9.06 8.28 -86.91 -0.72 8.34 16 5 O -0.59 -9.73 15.92 5.29 0.08 -9.64 16 6 N -0.74 -8.57 5.41 -66.42 -0.36 -8.93 16 7 C 0.23 2.97 6.23 -5.19 -0.03 2.94 16 8 C -0.06 -0.93 6.61 -82.78 -0.55 -1.47 16 9 C -0.03 -0.50 11.50 -17.05 -0.20 -0.69 16 10 N -0.27 -4.74 3.44 -61.27 -0.21 -4.95 16 11 C 0.11 1.98 6.39 -4.04 -0.03 1.96 16 12 C 0.01 0.36 5.10 -27.88 -0.14 0.22 16 13 C -0.53 -13.86 9.11 -34.44 -0.31 -14.17 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 17 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 N -0.07 -1.37 12.91 60.35 0.78 -0.59 16 22 N -0.27 -5.02 12.41 33.29 0.41 -4.60 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 25 H 0.08 0.72 7.42 -51.93 -0.39 0.33 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.31 8.07 -51.93 -0.42 -0.10 16 28 H 0.07 0.39 6.37 -51.93 -0.33 0.06 16 29 H 0.40 4.02 6.20 -40.82 -0.25 3.76 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.10 1.46 8.07 -51.93 -0.42 1.04 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.04 1.02 8.12 -51.93 -0.42 0.60 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -33.43 322.12 -5.35 -38.78 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.15 Total: 0.08 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.84 Total: 1.27 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.72 Total: -50.74 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.43 -5.35 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333938001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.642 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds