Wall clock time and date at job start Mon Mar 30 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99931 * 2 1 4 4 C 1.34773 * 119.99973 * 179.97438 * 2 1 3 5 5 O 1.21588 * 120.00151 * 359.73121 * 4 2 1 6 6 N 1.34784 * 119.99935 * 180.02562 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72905 * 6 4 2 8 8 C 1.50699 * 109.46700 * 180.02562 * 7 6 4 9 9 C 1.35351 * 126.75692 * 94.71126 * 8 7 6 10 10 N 1.35313 * 106.17914 * 179.84733 * 9 8 7 11 11 C 1.46495 * 125.86753 * 180.11515 * 10 9 8 12 12 C 1.53000 * 109.46926 * 125.33183 * 11 10 9 13 13 C 1.50703 * 109.47209 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99789 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00070 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00176 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47027 * 59.99648 * 17 15 13 19 19 H 1.48496 * 109.47398 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46875 * 300.00164 * 17 15 13 21 21 N 1.28722 * 108.26119 * 0.41861 * 10 9 8 22 22 N 1.28636 * 110.17653 * 359.73556 * 21 10 9 23 23 H 1.08997 * 109.47506 * 270.00051 * 1 2 3 24 24 H 1.09003 * 109.47023 * 30.00279 * 1 2 3 25 25 H 1.09002 * 109.46896 * 149.99872 * 1 2 3 26 26 H 1.09000 * 109.47191 * 269.99858 * 3 2 1 27 27 H 1.09004 * 109.46976 * 30.00047 * 3 2 1 28 28 H 1.08998 * 109.47074 * 149.99450 * 3 2 1 29 29 H 0.97005 * 119.99846 * 359.72693 * 6 4 2 30 30 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 31 31 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 32 32 H 1.08000 * 126.90979 * 359.97438 * 9 8 7 33 33 H 1.09005 * 109.47280 * 245.32964 * 11 10 9 34 34 H 1.08993 * 109.47436 * 5.33325 * 11 10 9 35 35 H 1.09005 * 109.46962 * 299.99975 * 12 11 10 36 36 H 1.09002 * 109.47691 * 59.99727 * 12 11 10 37 37 H 0.97004 * 119.99758 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5309 -2.2202 0.0059 6 7 3.4867 -1.1672 0.0010 7 6 4.2191 -2.4359 0.0076 8 6 5.7007 -2.1604 0.0075 9 6 6.5125 -2.0948 1.0885 10 7 7.7518 -1.8305 0.6140 11 6 8.9643 -1.6725 1.4209 12 6 10.0411 -2.6356 0.9171 13 6 11.2882 -2.4736 1.7475 14 1 11.3106 -1.7553 2.5536 15 6 12.4005 -3.2424 1.4781 16 7 12.3731 -4.1176 0.4968 17 14 13.9467 -3.0411 2.5070 18 1 13.6382 -3.3420 3.9281 19 1 14.9914 -3.9768 2.0190 20 1 14.4392 -1.6450 2.3923 21 7 7.6811 -1.7353 -0.6678 22 7 6.4713 -1.9269 -1.0608 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 2.3792 1.5834 -1.0277 27 1 1.6083 2.0284 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.9717 -0.3271 -0.0030 30 1 3.9555 -3.0030 0.9003 31 1 3.9562 -3.0119 -0.8796 32 1 6.2286 -2.2287 2.1219 33 1 9.3256 -0.6475 1.3370 34 1 8.7381 -1.8939 2.4638 35 1 9.6798 -3.6606 1.0009 36 1 10.2674 -2.4143 -0.1260 37 1 13.1556 -4.6587 0.3075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333938001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:07 Heat of formation + Delta-G solvation = 45.207321 kcal Electronic energy + Delta-G solvation = -19427.476708 eV Core-core repulsion = 16241.485772 eV Total energy + Delta-G solvation = -3185.990935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 4.59 seconds Orbital eigenvalues (eV) -44.25880 -41.13513 -37.06337 -36.51588 -35.99959 -34.70853 -32.40024 -31.75922 -29.04917 -27.99484 -27.35233 -25.96351 -24.26184 -22.84925 -21.70165 -21.16295 -19.24625 -18.84125 -17.75633 -17.50295 -17.12730 -16.99810 -16.47211 -15.83881 -15.52901 -15.33153 -14.97270 -14.82219 -14.39140 -14.11280 -13.76764 -13.50933 -13.40301 -13.40155 -12.94203 -12.81046 -12.69159 -12.56233 -12.28838 -12.01529 -11.73649 -11.47119 -11.40185 -10.92281 -10.61562 -10.30617 -10.26827 -9.51469 -8.25817 -6.40141 0.67042 1.20672 1.42184 1.45955 1.52824 1.56531 1.92591 2.10179 2.40027 3.04993 3.09833 3.27424 3.73351 3.94752 4.10651 4.24068 4.27187 4.38099 4.51751 4.52408 4.58404 4.64096 4.79566 4.87764 4.96035 4.97490 5.08104 5.30836 5.36741 5.45874 5.49942 5.57091 5.77524 5.87248 6.05044 6.76753 6.88734 7.31386 7.49456 7.53225 8.86459 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.054143 B = 0.002873 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.026434 B = 9742.074504 C = 9900.382750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.639 5.639 3 C 0.074 3.926 4 C 0.699 3.301 5 O -0.634 6.634 6 N -0.730 5.730 7 C 0.240 3.760 8 C -0.059 4.059 9 C -0.013 4.013 10 N -0.278 5.278 11 C 0.125 3.875 12 C 0.021 3.979 13 C -0.542 4.542 14 H 0.083 0.917 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.260 1.260 19 H -0.291 1.291 20 H -0.264 1.264 21 N -0.120 5.120 22 N -0.293 5.293 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.406 0.594 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.234 0.766 33 H 0.104 0.896 34 H 0.134 0.866 35 H -0.008 1.008 36 H -0.004 1.004 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.772 12.268 5.134 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.376 5.376 3 C -0.068 4.068 4 C 0.400 3.600 5 O -0.515 6.515 6 N -0.388 5.388 7 C 0.114 3.886 8 C -0.200 4.200 9 C -0.167 4.167 10 N -0.070 5.070 11 C 0.006 3.994 12 C -0.017 4.017 13 C -0.581 4.581 14 H 0.101 0.899 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.185 1.185 19 H -0.217 1.217 20 H -0.188 1.188 21 N -0.099 5.099 22 N -0.159 5.159 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.244 0.756 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.251 0.749 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.010 0.990 36 H 0.015 0.985 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.271 11.674 3.745 22.840 hybrid contribution 0.884 -0.225 0.883 1.270 sum -18.386 11.448 4.629 22.148 Atomic orbital electron populations 1.21639 0.76829 1.03458 1.02290 1.47051 1.07869 1.04956 1.77724 1.21962 0.97423 0.84623 1.02810 1.16028 0.81844 0.84251 0.77886 1.90890 1.68628 1.31785 1.60241 1.45150 1.04191 1.09942 1.79504 1.19044 0.80803 0.85128 1.03598 1.22057 0.97949 1.10567 0.89381 1.24172 0.83415 1.05625 1.03478 1.47958 1.10404 1.42523 1.06100 1.22555 0.79759 1.02782 0.94322 1.19161 0.92998 0.93221 0.96304 1.21435 0.97441 1.22221 1.16974 0.89936 1.26048 1.02902 0.94555 0.96375 1.70134 1.31315 1.24491 1.31424 0.85378 0.77658 0.78311 0.78979 1.18466 1.21685 1.18844 1.78389 1.15244 1.21432 0.94883 1.75028 0.96836 1.16386 1.27665 0.92239 0.88369 0.92553 0.91906 0.88141 0.91061 0.75649 0.88229 0.91409 0.74937 0.87766 0.84828 0.98972 0.98530 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 10.43 127.77 1.33 2.70 16 2 N -0.64 -11.02 3.27 -890.17 -2.91 -13.93 16 3 C 0.07 0.71 10.20 127.77 1.30 2.02 16 4 C 0.70 17.25 8.28 179.05 1.48 18.73 16 5 O -0.63 -20.83 15.92 -3.99 -0.06 -20.89 16 6 N -0.73 -15.92 5.41 -482.30 -2.61 -18.53 16 7 C 0.24 5.85 6.23 85.63 0.53 6.39 16 8 C -0.06 -1.70 6.61 41.60 0.28 -1.42 16 9 C -0.01 -0.34 11.50 83.49 0.96 0.62 16 10 N -0.28 -9.46 3.44 -347.75 -1.20 -10.66 16 11 C 0.12 4.26 6.39 86.38 0.55 4.82 16 12 C 0.02 1.03 5.10 29.85 0.15 1.19 16 13 C -0.54 -27.80 9.11 25.60 0.23 -27.57 16 14 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 17 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 21 N -0.12 -4.88 12.91 37.02 0.48 -4.41 16 22 N -0.29 -10.89 12.41 -48.60 -0.60 -11.50 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 25 H 0.06 1.02 7.42 -2.39 -0.02 1.01 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.10 0.48 8.07 -2.38 -0.02 0.46 16 28 H 0.07 0.64 6.37 -2.39 -0.02 0.62 16 29 H 0.41 7.44 6.20 -92.70 -0.57 6.87 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.23 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.13 3.56 8.07 -2.39 -0.02 3.54 16 35 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 36 H 0.00 -0.21 8.12 -2.39 -0.02 -0.23 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -76.13 322.12 3.19 -72.94 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.50 Total: 10.96 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 7.29 Total: 7.91 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -6.56 Total: -114.42 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -76.13 3.19 -72.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333938001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.148 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.59 seconds