Wall clock time and date at job start Mon Mar 30 2020 00:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00157 * 2 1 3 5 5 H 1.08006 * 119.99920 * 239.99903 * 4 2 1 6 6 C 1.37876 * 120.00428 * 60.00053 * 4 2 1 7 7 N 1.31520 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 13 13 N 1.46497 * 109.46983 * 300.00028 * 12 2 1 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.47473 * 179.97438 * 17 16 14 19 19 C 1.34597 * 126.43783 * 125.00017 * 18 17 16 20 20 N 1.31072 * 106.67933 * 180.02562 * 19 18 17 21 21 N 1.28839 * 107.98903 * 359.97438 * 20 19 18 22 22 N 1.28743 * 109.40039 * 359.73711 * 21 20 19 23 23 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 24 24 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 25 25 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 28 28 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 29 29 H 0.96993 * 120.00405 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 31 31 H 1.09002 * 109.47153 * 60.00035 * 12 2 1 32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 37 37 H 1.08006 * 126.66195 * 0.03258 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3749 0.2193 4.8999 17 6 1.8850 -0.5019 6.1492 18 7 1.3968 0.1887 7.3454 19 6 0.6990 -0.3606 8.3568 20 7 0.4639 0.6000 9.2170 21 7 0.9904 1.6827 8.7581 22 7 1.5600 1.4365 7.6301 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7086 1.1613 -3.4844 30 1 3.1300 -0.7216 1.2489 31 1 1.6767 -1.7489 1.2492 32 1 0.9943 0.7582 2.3564 33 1 1.7375 1.2472 4.8999 34 1 0.2849 0.2185 4.9000 35 1 1.5221 -1.5297 6.1490 36 1 2.9750 -0.5015 6.1494 37 1 0.3924 -1.3927 8.4429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334199266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:07 Heat of formation + Delta-G solvation = 71.071225 kcal Electronic energy + Delta-G solvation = -19892.761310 eV Core-core repulsion = 16707.891918 eV Total energy + Delta-G solvation = -3184.869392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.39735 -39.69314 -36.78635 -36.07159 -33.48341 -32.74632 -31.80921 -30.80979 -26.69623 -25.83154 -25.50501 -24.56832 -24.03843 -22.55256 -20.28066 -18.92346 -18.25771 -17.32290 -16.74585 -16.08150 -15.89555 -15.78220 -15.29490 -14.67107 -14.27659 -13.64415 -13.30870 -13.16468 -12.92438 -12.71798 -12.36481 -12.30001 -11.81997 -11.47720 -11.40747 -11.28806 -11.11075 -10.94857 -10.77213 -10.58424 -10.49321 -10.29260 -9.86527 -9.74773 -9.40493 -8.89160 -8.63982 -8.44086 -6.10240 -4.20971 1.00611 1.68454 2.02111 2.71025 3.22669 3.30229 3.32706 3.44974 3.93059 3.99470 4.25584 4.33079 4.54435 4.74074 4.98495 5.07489 5.16758 5.22208 5.33325 5.50448 5.87631 6.07612 6.18212 6.38396 6.60759 6.71242 6.78621 6.84682 6.90296 7.23994 7.45363 7.60673 7.79727 7.91157 8.03573 8.27271 8.36488 8.40324 8.79595 9.45543 10.91187 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.052824 B = 0.003197 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.937381 B = 8755.257381 C = 8990.535772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.512 3.488 15 O -0.554 6.554 16 C -0.159 4.159 17 C 0.131 3.869 18 N -0.306 5.306 19 C 0.160 3.840 20 N -0.311 5.311 21 N -0.079 5.079 22 N -0.091 5.091 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.261 0.739 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.401 0.599 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -2.190 14.226 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.360 5.360 14 C 0.296 3.704 15 O -0.434 6.434 16 C -0.200 4.200 17 C 0.010 3.990 18 N -0.108 5.108 19 C -0.138 4.138 20 N -0.159 5.159 21 N -0.074 5.074 22 N -0.077 5.077 23 H 0.024 0.976 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.916 -1.449 14.596 14.696 hybrid contribution 0.002 -1.071 -1.429 1.785 sum -0.914 -2.520 13.167 13.437 Atomic orbital electron populations 1.21846 0.97738 0.99185 1.00156 1.18362 0.92801 0.92797 0.90517 1.21843 0.98658 0.98289 1.00179 1.20967 1.31703 1.12194 0.89855 0.92401 1.24883 0.94798 0.94880 0.98908 1.69793 1.36540 1.22669 1.23367 0.86562 0.79332 0.79398 0.82539 1.20680 1.21212 1.19876 1.21792 0.98328 0.95831 0.83207 1.46316 1.52035 1.31672 1.05944 1.20000 0.81029 0.84719 0.84657 1.90709 1.38941 1.26776 1.86985 1.21919 1.03631 1.02323 0.92131 1.22043 1.02471 0.95938 0.78544 1.48879 1.36041 1.07365 1.18559 1.27778 0.97036 1.03208 0.85807 1.75002 1.19940 0.96297 1.24709 1.78653 1.08429 1.18279 1.02001 1.78898 1.19083 0.97008 1.12742 0.97562 0.89503 0.95410 0.95357 0.89518 0.97498 0.92907 0.92436 0.92466 0.76382 0.87081 0.88041 0.85801 0.86566 0.74886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 4 C -0.51 -12.76 8.01 -34.44 -0.28 -13.03 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.88 9.35 55.43 0.52 -22.37 16 8 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 12 C 0.13 2.51 4.50 -4.04 -0.02 2.50 16 13 N -0.71 -10.80 4.96 -60.30 -0.30 -11.10 16 14 C 0.51 6.92 7.83 -10.98 -0.09 6.83 16 15 O -0.55 -9.22 15.98 5.56 0.09 -9.13 16 16 C -0.16 -1.43 5.85 -27.88 -0.16 -1.59 16 17 C 0.13 0.99 5.77 -4.04 -0.02 0.97 16 18 N -0.31 -2.76 3.44 -62.55 -0.22 -2.97 16 19 C 0.16 1.27 12.79 -90.39 -1.16 0.11 16 20 N -0.31 -3.69 12.36 29.59 0.37 -3.32 16 21 N -0.08 -1.08 13.43 60.35 0.81 -0.27 16 22 N -0.09 -1.11 13.08 60.35 0.79 -0.32 16 23 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 24 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 5.53 6.16 -40.82 -0.25 5.28 16 33 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.12 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.12 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.24 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -30.20 311.14 -4.50 -34.70 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.93 Total: 1.51 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.29 Total: -6.48 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 1.97 Total: -40.35 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.20 -4.50 -34.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334199266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.768 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds