Wall clock time and date at job start Mon Mar 30 2020 00:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00157 * 2 1 3 5 5 H 1.08006 * 119.99920 * 239.99903 * 4 2 1 6 6 C 1.37876 * 120.00428 * 60.00053 * 4 2 1 7 7 N 1.31520 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 13 13 N 1.46497 * 109.46983 * 300.00028 * 12 2 1 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.47473 * 179.97438 * 17 16 14 19 19 C 1.34597 * 126.43783 * 125.00017 * 18 17 16 20 20 N 1.31072 * 106.67933 * 180.02562 * 19 18 17 21 21 N 1.28839 * 107.98903 * 359.97438 * 20 19 18 22 22 N 1.28743 * 109.40039 * 359.73711 * 21 20 19 23 23 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 24 24 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 25 25 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 28 28 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 29 29 H 0.96993 * 120.00405 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 31 31 H 1.09002 * 109.47153 * 60.00035 * 12 2 1 32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 37 37 H 1.08006 * 126.66195 * 0.03258 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3749 0.2193 4.8999 17 6 1.8850 -0.5019 6.1492 18 7 1.3968 0.1887 7.3454 19 6 0.6990 -0.3606 8.3568 20 7 0.4639 0.6000 9.2170 21 7 0.9904 1.6827 8.7581 22 7 1.5600 1.4365 7.6301 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7086 1.1613 -3.4844 30 1 3.1300 -0.7216 1.2489 31 1 1.6767 -1.7489 1.2492 32 1 0.9943 0.7582 2.3564 33 1 1.7375 1.2472 4.8999 34 1 0.2849 0.2185 4.9000 35 1 1.5221 -1.5297 6.1490 36 1 2.9750 -0.5015 6.1494 37 1 0.3924 -1.3927 8.4429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334199266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:07 Heat of formation + Delta-G solvation = 51.148534 kcal Electronic energy + Delta-G solvation = -19893.625223 eV Core-core repulsion = 16707.891918 eV Total energy + Delta-G solvation = -3185.733305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.15647 -40.86758 -38.25149 -36.97066 -35.00886 -33.53211 -32.98478 -32.16917 -27.84014 -27.55835 -27.24921 -25.86829 -24.77615 -23.38315 -21.42079 -20.59808 -19.06945 -18.10026 -17.97597 -17.46090 -16.89432 -16.77227 -16.53424 -16.36800 -15.34655 -14.86195 -14.75120 -14.41953 -14.08594 -13.96650 -13.62763 -13.22585 -13.14683 -13.07882 -12.69212 -12.59946 -12.49720 -12.24476 -12.18564 -12.13831 -11.84705 -11.47731 -11.34755 -11.28822 -10.91181 -10.68312 -10.39867 -9.94313 -8.02617 -6.18415 0.29664 1.02371 1.24617 1.42272 1.46002 1.53288 1.63100 2.32317 2.49945 3.21484 3.27755 3.50195 3.58803 3.83423 3.90373 4.29623 4.37409 4.45354 4.49451 4.54904 4.67929 4.72904 4.83226 5.01754 5.06336 5.10262 5.20404 5.26576 5.36917 5.58710 5.67626 5.67815 6.16148 6.22845 6.43549 6.62115 6.87046 7.25814 7.49911 7.58306 8.95985 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.052824 B = 0.003197 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.937381 B = 8755.257381 C = 8990.535772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.148 3.852 13 N -0.711 5.711 14 C 0.516 3.484 15 O -0.584 6.584 16 C -0.146 4.146 17 C 0.133 3.867 18 N -0.302 5.302 19 C 0.183 3.817 20 N -0.345 5.345 21 N -0.113 5.113 22 N -0.111 5.111 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.259 0.741 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.410 0.590 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.152 0.848 36 H 0.113 0.887 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 -2.931 15.371 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.024 3.976 13 N -0.361 5.361 14 C 0.303 3.697 15 O -0.465 6.465 16 C -0.186 4.186 17 C 0.013 3.987 18 N -0.104 5.104 19 C -0.115 4.115 20 N -0.193 5.193 21 N -0.107 5.107 22 N -0.099 5.099 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.247 0.753 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.170 0.830 36 H 0.132 0.868 37 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -1.472 -2.176 15.758 15.975 hybrid contribution 0.188 -0.906 -1.771 1.998 sum -1.284 -3.082 13.987 14.380 Atomic orbital electron populations 1.21680 0.97135 0.98747 1.00386 1.18355 0.93226 0.92912 0.90550 1.21688 0.97949 0.98035 1.00380 1.21310 1.31627 1.12174 0.91591 0.93534 1.25449 0.95191 0.95558 1.01003 1.69909 1.37086 1.23323 1.23555 0.85793 0.78726 0.78480 0.80016 1.20502 1.21106 1.19962 1.21265 0.97146 0.95194 0.83995 1.46149 1.52563 1.31937 1.05494 1.20631 0.79864 0.84131 0.85079 1.90704 1.40132 1.28289 1.87411 1.21815 1.04792 1.01868 0.90151 1.22163 1.02458 0.96768 0.77353 1.48937 1.35873 1.06616 1.19019 1.28705 0.94518 1.04303 0.83983 1.74935 1.21187 0.96899 1.26307 1.78636 1.09642 1.19586 1.02839 1.78836 1.19602 0.98714 1.12702 0.94281 0.92222 0.96106 0.96292 0.92183 0.94326 0.93111 0.94110 0.93748 0.75344 0.86627 0.85869 0.82995 0.86847 0.69810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 8.08 71.98 0.58 -4.46 16 2 C 0.05 2.16 0.50 -52.93 -0.03 2.14 16 3 C -0.12 -5.16 8.08 71.98 0.58 -4.57 16 4 C -0.53 -26.72 8.01 25.60 0.21 -26.52 16 5 H 0.05 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.42 5.15 84.65 0.44 1.85 16 7 N -0.90 -46.84 9.35 21.45 0.20 -46.64 16 8 Si 0.94 41.39 29.54 68.60 2.03 43.41 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 C 0.15 5.59 4.50 86.38 0.39 5.98 16 13 N -0.71 -20.12 4.96 -463.06 -2.30 -22.41 16 14 C 0.52 12.68 7.83 87.66 0.69 13.37 16 15 O -0.58 -18.31 15.98 -3.03 -0.05 -18.36 16 16 C -0.15 -2.13 5.85 29.85 0.17 -1.96 16 17 C 0.13 1.55 5.77 86.38 0.50 2.05 16 18 N -0.30 -4.55 3.44 -351.82 -1.21 -5.76 16 19 C 0.18 2.26 12.79 180.27 2.31 4.57 16 20 N -0.34 -7.57 12.36 -60.29 -0.74 -8.32 16 21 N -0.11 -2.98 13.43 37.01 0.50 -2.48 16 22 N -0.11 -2.54 13.08 37.02 0.48 -2.06 16 23 H 0.04 1.31 6.86 -2.38 -0.02 1.30 16 24 H 0.06 2.82 6.07 -2.39 -0.01 2.81 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 28 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 29 H 0.26 13.08 8.31 -92.71 -0.77 12.31 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.41 10.11 6.16 -92.71 -0.57 9.54 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.15 0.98 8.04 -2.39 -0.02 0.96 16 36 H 0.11 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.29 -0.04 8.06 -2.91 -0.02 -0.06 16 Total: -1.00 -66.95 311.14 5.26 -61.70 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.52 Total: 8.48 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.83 Total: -7.56 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -3.07 Total: -87.67 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -66.95 5.26 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334199266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.844 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds