Wall clock time and date at job start Mon Mar 30 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46687 * 2 1 4 4 N 1.46506 * 109.46960 * 180.02562 * 3 2 1 5 5 C 1.34774 * 119.99664 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00389 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99618 * 179.97438 * 5 4 3 8 8 N 1.46491 * 109.47207 * 180.02562 * 7 5 4 9 9 C 1.35317 * 125.87029 * 125.29585 * 8 7 5 10 10 C 1.35352 * 106.17693 * 180.18381 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.08999 * 109.47382 * 59.99993 * 1 2 3 24 24 H 1.09002 * 109.46989 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47286 * 299.99073 * 1 2 3 26 26 H 1.08997 * 109.47003 * 240.00214 * 2 1 3 27 27 H 1.08999 * 109.47382 * 120.00007 * 2 1 3 28 28 H 1.08997 * 109.47224 * 60.00350 * 3 2 1 29 29 H 1.08999 * 109.47215 * 300.00109 * 3 2 1 30 30 H 0.97000 * 119.99594 * 359.97438 * 4 3 2 31 31 H 1.08997 * 109.46964 * 60.00001 * 7 5 4 32 32 H 1.08999 * 109.47194 * 299.99933 * 7 5 4 33 33 H 1.08002 * 126.91295 * 0.03783 * 9 8 7 34 34 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 35 35 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 37 37 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1787 2.6098 -0.0002 6 8 3.5723 3.6601 0.0011 7 6 5.6858 2.6099 -0.0003 8 7 6.1740 3.9910 0.0009 9 6 7.0357 4.5267 0.8962 10 6 7.2087 5.8174 0.5274 11 6 8.0773 6.8418 1.2109 12 7 9.3893 6.8818 0.5602 13 6 10.3501 7.7481 1.0092 14 1 10.1422 8.3987 1.8458 15 6 11.5913 7.7901 0.3891 16 7 11.8445 6.9975 -0.6308 17 14 12.9022 8.9713 1.0020 18 1 13.7224 8.3031 2.0442 19 1 13.7738 9.3745 -0.1307 20 1 12.2526 10.1752 1.5797 21 7 6.4614 6.0034 -0.5664 22 7 5.8609 4.9024 -0.8525 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6765 1.9563 -0.8900 30 1 3.9900 0.6025 -0.0006 31 1 6.0490 2.0964 -0.8904 32 1 6.0491 2.0958 0.8895 33 1 7.4916 4.0257 1.7375 34 1 8.2001 6.5724 2.2599 35 1 7.6067 7.8224 1.1403 36 1 9.5760 6.2977 -0.1914 37 1 12.7119 7.0265 -1.0639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336879290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:04 Heat of formation + Delta-G solvation = 75.381882 kcal Electronic energy + Delta-G solvation = -19270.979392 eV Core-core repulsion = 16086.296924 eV Total energy + Delta-G solvation = -3184.682468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.88518 -40.00696 -36.32340 -35.08584 -34.06811 -33.10316 -31.75330 -29.86725 -29.04776 -26.31377 -25.68514 -22.79109 -22.40042 -21.98468 -21.13584 -20.26605 -17.78539 -17.50555 -16.98537 -16.40068 -16.01722 -15.77828 -15.06185 -14.63312 -14.45571 -14.06927 -13.72054 -13.42104 -13.31740 -13.05202 -12.66036 -12.59542 -12.49004 -11.85103 -11.68475 -11.42718 -11.16383 -10.84049 -10.75940 -10.53383 -10.33546 -10.04293 -9.77953 -9.61839 -9.54547 -8.83026 -8.73011 -6.86192 -5.69240 -2.98467 1.83221 2.16007 2.24862 2.85056 3.04996 3.48913 3.54067 3.56450 4.09760 4.28622 4.33209 4.43408 4.61581 4.67061 4.68793 4.82778 5.09426 5.10378 5.25428 5.35461 5.48497 5.54858 5.57915 5.67234 5.69891 5.88651 5.93267 6.23910 6.49310 6.72897 6.74932 6.86084 6.99130 7.75041 7.75957 8.48278 8.96196 9.59906 10.16290 10.52565 11.53648 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.073615 B = 0.002752 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.264171 B =10173.183470 C =10265.877776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.118 3.882 4 N -0.731 5.731 5 C 0.500 3.500 6 O -0.502 6.502 7 C 0.102 3.898 8 N -0.295 5.295 9 C -0.047 4.047 10 C -0.003 4.003 11 C 0.233 3.767 12 N -0.726 5.726 13 C -0.238 4.238 14 H 0.073 0.927 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 N -0.254 5.254 22 N -0.069 5.069 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.402 0.598 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.189 0.811 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.385 0.615 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.291 -20.240 3.770 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.005 4.005 4 N -0.385 5.385 5 C 0.283 3.717 6 O -0.374 6.374 7 C -0.024 4.024 8 N -0.089 5.089 9 C -0.196 4.196 10 C -0.140 4.140 11 C 0.104 3.896 12 N -0.371 5.371 13 C -0.369 4.369 14 H 0.091 0.909 15 C -0.211 4.211 16 N -0.581 5.581 17 Si 0.741 3.259 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.207 1.207 21 N -0.122 5.122 22 N -0.048 5.048 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.207 0.793 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.219 0.781 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.493 -18.983 2.609 28.056 hybrid contribution 1.665 -0.558 0.967 2.005 sum -18.828 -19.541 3.576 27.370 Atomic orbital electron populations 1.21684 0.94388 1.02276 1.02516 1.21738 0.97179 0.95583 1.02820 1.21449 0.78788 0.97385 1.02863 1.45867 1.07700 1.08197 1.76749 1.20418 0.89415 0.84427 0.77406 1.90862 1.69310 1.30856 1.46401 1.21691 0.93025 0.80209 1.07504 1.46638 1.31450 1.10380 1.20412 1.23354 1.00255 0.95968 1.00034 1.22445 1.00965 0.94748 0.95856 1.18948 0.84647 0.92681 0.93349 1.42321 1.08490 1.47326 1.38936 1.19246 0.92056 1.13782 1.11776 0.90879 1.24764 0.98000 1.00002 0.98328 1.69688 1.22828 1.41338 1.24286 0.86144 0.81748 0.80541 0.77481 1.21791 1.21835 1.20680 1.75127 1.08263 1.15337 1.13457 1.78360 1.19440 0.92697 1.14299 0.92216 0.92070 0.92275 0.91152 0.91210 0.91290 0.91158 0.76362 0.85554 0.84880 0.79349 0.94456 0.94271 0.78103 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.14 -0.51 6.05 -26.73 -0.16 -0.67 16 3 C 0.12 0.77 5.67 -4.04 -0.02 0.75 16 4 N -0.73 -4.57 5.56 -60.29 -0.33 -4.91 16 5 C 0.50 5.22 7.84 -10.98 -0.09 5.14 16 6 O -0.50 -8.15 15.68 5.56 0.09 -8.07 16 7 C 0.10 0.88 6.94 -5.20 -0.04 0.85 16 8 N -0.29 -4.50 3.20 -62.45 -0.20 -4.70 16 9 C -0.05 -0.75 11.50 -17.04 -0.20 -0.94 16 10 C 0.00 -0.06 6.61 -82.78 -0.55 -0.61 16 11 C 0.23 5.13 6.82 -5.19 -0.04 5.10 16 12 N -0.73 -19.53 5.59 -61.09 -0.34 -19.87 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 14 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 16 N -0.93 -29.14 13.06 55.49 0.72 -28.41 16 17 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 N -0.25 -5.66 12.41 33.29 0.41 -5.25 16 22 N -0.07 -1.36 12.13 60.35 0.73 -0.63 16 23 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.40 1.02 8.47 -40.82 -0.35 0.68 16 31 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.13 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.39 11.13 7.66 -40.82 -0.31 10.81 16 37 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -39.50 325.15 -5.28 -44.78 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.27 Total: 2.47 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.96 Total: 1.86 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.99 Total: -63.77 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -39.50 -5.28 -44.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336879290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.161 kcal (2) G-P(sol) polarization free energy of solvation -39.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds