Wall clock time and date at job start Mon Mar 30 2020 00:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29023 * 126.43572 * 2 1 4 4 N 1.28741 * 108.80568 * 179.97438 * 3 2 1 5 5 N 1.28844 * 109.39958 * 359.76213 * 4 3 2 6 6 C 1.31076 * 107.98915 * 0.38011 * 5 4 3 7 7 C 1.50696 * 126.66258 * 179.89062 * 6 5 4 8 8 C 1.52997 * 109.47242 * 269.69234 * 7 6 5 9 9 C 1.53006 * 109.47127 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99531 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.53006 * 109.47126 * 180.02562 * 13 11 10 15 15 C 1.50690 * 109.47292 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99710 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00510 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99589 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00335 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47046 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46971 * 120.00160 * 19 17 15 22 22 H 1.48500 * 109.46790 * 239.99886 * 19 17 15 23 23 H 1.08990 * 109.47269 * 270.02661 * 1 2 3 24 24 H 1.09006 * 109.47046 * 30.02375 * 1 2 3 25 25 H 1.08997 * 109.47245 * 150.02015 * 1 2 3 26 26 H 1.08996 * 109.47390 * 149.69204 * 7 6 5 27 27 H 1.09001 * 109.46948 * 29.68845 * 7 6 5 28 28 H 1.09001 * 109.47502 * 60.00161 * 8 7 6 29 29 H 1.09001 * 109.47289 * 299.99957 * 8 7 6 30 30 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 31 31 H 1.08993 * 109.46955 * 60.00011 * 9 8 7 32 32 H 0.96992 * 119.99966 * 359.97438 * 10 9 8 33 33 H 1.08998 * 109.47224 * 299.99707 * 13 11 10 34 34 H 1.08993 * 109.47046 * 60.00641 * 13 11 10 35 35 H 1.09001 * 109.46998 * 300.00313 * 14 13 11 36 36 H 1.08996 * 109.46884 * 59.99429 * 14 13 11 37 37 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0380 0.0000 4 7 3.4583 0.6481 0.0005 5 7 3.4980 -0.6397 0.0059 6 6 2.2645 -1.0828 0.0007 7 6 1.8263 -2.5247 0.0016 8 6 1.6780 -3.0136 -1.4405 9 6 1.2325 -4.4774 -1.4395 10 7 1.0910 -4.9457 -2.8204 11 6 0.7058 -6.2137 -3.0658 12 8 0.4759 -6.9669 -2.1434 13 6 0.5598 -6.6954 -4.4863 14 6 0.1144 -8.1592 -4.4853 15 6 -0.0311 -8.6410 -5.9056 16 1 0.1732 -7.9701 -6.7270 17 6 -0.4250 -9.9382 -6.1567 18 7 -0.6733 -10.7553 -5.1565 19 14 -0.6047 -10.5356 -7.9175 20 1 -0.2687 -9.4312 -8.8516 21 1 0.3158 -11.6777 -8.1490 22 1 -2.0045 -10.9727 -8.1514 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 0.8692 -2.6133 0.5155 27 1 2.5723 -3.1308 0.5158 28 1 2.6351 -2.9252 -1.9545 29 1 0.9320 -2.4076 -1.9547 30 1 1.9781 -5.0838 -0.9252 31 1 0.2753 -4.5655 -0.9257 32 1 1.2746 -4.3432 -3.5580 33 1 -0.1862 -6.0894 -5.0005 34 1 1.5169 -6.6069 -5.0001 35 1 0.8600 -8.7654 -3.9709 36 1 -0.8428 -8.2473 -3.9714 37 1 -0.9508 -11.6678 -5.3332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339018296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:51 Heat of formation + Delta-G solvation = 58.020818 kcal Electronic energy + Delta-G solvation = -19044.110132 eV Core-core repulsion = 15858.674831 eV Total energy + Delta-G solvation = -3185.435300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.54988 -39.25412 -36.62016 -35.87682 -34.00758 -33.47396 -31.72648 -30.84977 -29.01262 -27.24864 -25.41964 -23.85959 -22.93588 -21.83328 -21.46729 -19.62590 -17.89209 -17.63596 -16.88050 -16.26259 -16.06473 -15.64490 -14.92850 -14.88016 -14.41718 -14.29076 -14.23601 -13.25762 -13.20930 -13.12898 -12.85574 -12.50963 -12.18458 -12.09338 -11.89823 -11.48860 -11.33183 -11.28159 -11.18417 -10.96222 -10.60276 -10.41502 -9.99334 -9.70187 -9.22067 -9.04811 -8.88409 -8.34605 -5.98608 -4.02968 0.81571 1.56063 1.86738 3.19552 3.28758 3.30868 3.38289 3.41399 3.61065 3.71742 4.17304 4.31828 4.45023 4.55327 4.58924 4.60343 4.66938 4.93722 5.06970 5.17079 5.32708 5.33625 5.36543 5.51588 5.69306 5.73506 5.86168 6.18882 6.20749 6.62091 6.85825 7.72008 7.79973 7.83231 8.04473 8.23773 8.36039 8.71604 9.05817 9.60809 11.12388 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.050361 B = 0.002478 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.848297 B =11298.035995 C =11387.962682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.309 5.309 3 N -0.098 5.098 4 N -0.075 5.075 5 N -0.300 5.300 6 C 0.190 3.810 7 C -0.037 4.037 8 C -0.128 4.128 9 C 0.121 3.879 10 N -0.746 5.746 11 C 0.510 3.490 12 O -0.534 6.534 13 C -0.130 4.130 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 21.516 10.220 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.111 5.111 3 N -0.084 5.084 4 N -0.069 5.069 5 N -0.150 5.150 6 C -0.088 4.088 7 C -0.078 4.078 8 C -0.167 4.167 9 C -0.004 4.004 10 N -0.401 5.401 11 C 0.298 3.702 12 O -0.409 6.409 13 C -0.170 4.170 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.118 0.882 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.231 0.769 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.457 21.806 10.957 24.448 hybrid contribution -0.883 -0.539 -1.256 1.627 sum 0.574 21.267 9.701 23.382 Atomic orbital electron populations 1.22462 0.71358 1.06883 1.05860 1.48448 1.10797 1.04327 1.47550 1.78898 0.98013 1.12770 1.18723 1.78644 1.09669 1.03854 1.14767 1.75062 1.17676 1.03461 1.18777 1.26118 0.86706 0.94329 1.01694 1.20168 1.03945 0.84462 0.99210 1.21788 1.03363 0.96414 0.95111 1.21167 1.01646 0.92541 0.85000 1.46182 1.72384 1.13950 1.07598 1.21577 0.74876 0.80327 0.93382 1.90674 1.48711 1.54581 1.46904 1.21871 1.02532 1.02579 0.90051 1.18906 0.97528 0.86883 0.96812 1.21257 1.46243 0.96773 0.92235 0.92560 1.25033 0.95462 0.96925 0.97021 1.70007 1.46194 1.06112 1.30521 0.86533 0.77694 0.78785 0.84936 1.19757 1.20991 1.21023 0.88237 0.87330 0.87353 0.88476 0.86789 0.89955 0.91119 0.91232 0.91524 0.76884 0.90258 0.90189 0.95797 0.95837 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.15 11.09 59.85 0.66 0.82 16 2 N -0.31 -2.26 3.75 -65.03 -0.24 -2.51 16 3 N -0.10 -1.06 13.29 60.35 0.80 -0.26 16 4 N -0.08 -0.98 13.43 60.35 0.81 -0.17 16 5 N -0.30 -3.58 12.36 32.70 0.40 -3.18 16 6 C 0.19 1.55 7.39 -155.43 -1.15 0.40 16 7 C -0.04 -0.19 5.36 -27.89 -0.15 -0.34 16 8 C -0.13 -0.77 5.31 -26.73 -0.14 -0.91 16 9 C 0.12 1.14 5.67 -4.04 -0.02 1.11 16 10 N -0.75 -9.06 5.56 -60.29 -0.33 -9.39 16 11 C 0.51 9.17 7.83 -10.98 -0.09 9.09 16 12 O -0.53 -11.97 15.98 5.56 0.09 -11.88 16 13 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 14 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 15 C -0.53 -14.74 9.11 -34.45 -0.31 -15.05 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H 0.10 0.04 8.14 -51.93 -0.42 -0.39 16 24 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 25 H 0.11 0.01 7.75 -51.93 -0.40 -0.39 16 26 H 0.10 0.25 7.81 -51.93 -0.41 -0.16 16 27 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 3.68 8.47 -40.82 -0.35 3.34 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -38.04 325.18 -4.77 -42.81 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -5.34 Total: -5.13 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.57 Total: -5.18 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 2.17 Total: -41.92 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -38.04 -4.77 -42.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339018296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.831 kcal (2) G-P(sol) polarization free energy of solvation -38.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds