Wall clock time and date at job start Mon Mar 30 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29023 * 126.43572 * 2 1 4 4 N 1.28741 * 108.80568 * 179.97438 * 3 2 1 5 5 N 1.28844 * 109.39958 * 359.76213 * 4 3 2 6 6 C 1.31076 * 107.98915 * 0.38011 * 5 4 3 7 7 C 1.50696 * 126.66258 * 179.89062 * 6 5 4 8 8 C 1.52997 * 109.47242 * 269.69234 * 7 6 5 9 9 C 1.53006 * 109.47127 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99531 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.53006 * 109.47126 * 180.02562 * 13 11 10 15 15 C 1.50690 * 109.47292 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99710 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00510 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99589 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00335 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47046 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46971 * 120.00160 * 19 17 15 22 22 H 1.48500 * 109.46790 * 239.99886 * 19 17 15 23 23 H 1.08990 * 109.47269 * 270.02661 * 1 2 3 24 24 H 1.09006 * 109.47046 * 30.02375 * 1 2 3 25 25 H 1.08997 * 109.47245 * 150.02015 * 1 2 3 26 26 H 1.08996 * 109.47390 * 149.69204 * 7 6 5 27 27 H 1.09001 * 109.46948 * 29.68845 * 7 6 5 28 28 H 1.09001 * 109.47502 * 60.00161 * 8 7 6 29 29 H 1.09001 * 109.47289 * 299.99957 * 8 7 6 30 30 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 31 31 H 1.08993 * 109.46955 * 60.00011 * 9 8 7 32 32 H 0.96992 * 119.99966 * 359.97438 * 10 9 8 33 33 H 1.08998 * 109.47224 * 299.99707 * 13 11 10 34 34 H 1.08993 * 109.47046 * 60.00641 * 13 11 10 35 35 H 1.09001 * 109.46998 * 300.00313 * 14 13 11 36 36 H 1.08996 * 109.46884 * 59.99429 * 14 13 11 37 37 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0380 0.0000 4 7 3.4583 0.6481 0.0005 5 7 3.4980 -0.6397 0.0059 6 6 2.2645 -1.0828 0.0007 7 6 1.8263 -2.5247 0.0016 8 6 1.6780 -3.0136 -1.4405 9 6 1.2325 -4.4774 -1.4395 10 7 1.0910 -4.9457 -2.8204 11 6 0.7058 -6.2137 -3.0658 12 8 0.4759 -6.9669 -2.1434 13 6 0.5598 -6.6954 -4.4863 14 6 0.1144 -8.1592 -4.4853 15 6 -0.0311 -8.6410 -5.9056 16 1 0.1732 -7.9701 -6.7270 17 6 -0.4250 -9.9382 -6.1567 18 7 -0.6733 -10.7553 -5.1565 19 14 -0.6047 -10.5356 -7.9175 20 1 -0.2687 -9.4312 -8.8516 21 1 0.3158 -11.6777 -8.1490 22 1 -2.0045 -10.9727 -8.1514 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 0.8692 -2.6133 0.5155 27 1 2.5723 -3.1308 0.5158 28 1 2.6351 -2.9252 -1.9545 29 1 0.9320 -2.4076 -1.9547 30 1 1.9781 -5.0838 -0.9252 31 1 0.2753 -4.5655 -0.9257 32 1 1.2746 -4.3432 -3.5580 33 1 -0.1862 -6.0894 -5.0005 34 1 1.5169 -6.6069 -5.0001 35 1 0.8600 -8.7654 -3.9709 36 1 -0.8428 -8.2473 -3.9714 37 1 -0.9508 -11.6678 -5.3332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339018296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:50 Heat of formation + Delta-G solvation = 28.613691 kcal Electronic energy + Delta-G solvation = -19045.385320 eV Core-core repulsion = 15858.674831 eV Total energy + Delta-G solvation = -3186.710489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.23062 -40.62157 -37.36444 -36.53995 -35.53801 -34.93184 -33.09457 -32.20103 -29.45760 -28.37672 -26.96325 -24.58038 -23.98190 -22.97460 -22.41486 -21.02710 -18.78601 -18.40390 -18.23145 -17.33695 -17.16781 -16.89332 -16.43144 -16.03595 -15.70763 -14.91057 -14.63953 -14.58534 -14.19854 -14.17081 -13.77263 -13.44170 -13.39854 -13.19153 -13.07896 -12.82579 -12.54207 -12.42322 -12.20490 -11.90696 -11.87210 -11.84409 -11.60974 -11.26316 -11.10559 -10.66810 -10.56266 -9.99856 -8.16878 -6.30359 0.18738 1.10743 1.13720 1.43494 1.44460 1.57674 1.77549 2.29330 2.46380 2.97792 3.16384 3.26216 3.83425 3.95984 4.02955 4.10888 4.20289 4.27972 4.35061 4.54981 4.56297 4.58091 4.60192 4.64029 4.78899 4.82613 5.08150 5.10508 5.19234 5.27036 5.50329 5.57911 5.66987 5.88327 6.20048 6.66320 6.88997 7.39213 7.41740 7.51643 8.95912 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.050361 B = 0.002478 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.848297 B =11298.035995 C =11387.962682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.297 5.297 3 N -0.112 5.112 4 N -0.115 5.115 5 N -0.337 5.337 6 C 0.197 3.803 7 C -0.032 4.032 8 C -0.112 4.112 9 C 0.118 3.882 10 N -0.721 5.721 11 C 0.511 3.489 12 O -0.588 6.588 13 C -0.122 4.122 14 C 0.040 3.960 15 C -0.541 4.541 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.253 1.253 21 H -0.282 1.282 22 H -0.280 1.280 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.416 0.584 33 H 0.105 0.895 34 H 0.101 0.899 35 H -0.019 1.019 36 H -0.016 1.016 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 23.015 8.900 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.100 5.100 3 N -0.099 5.099 4 N -0.109 5.109 5 N -0.187 5.187 6 C -0.082 4.082 7 C -0.073 4.073 8 C -0.151 4.151 9 C -0.005 4.005 10 N -0.374 5.374 11 C 0.300 3.700 12 O -0.468 6.468 13 C -0.161 4.161 14 C 0.003 3.997 15 C -0.579 4.579 16 H 0.093 0.907 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.796 3.204 20 H -0.177 1.177 21 H -0.208 1.208 22 H -0.206 1.206 23 H 0.138 0.862 24 H 0.136 0.864 25 H 0.154 0.846 26 H 0.150 0.850 27 H 0.132 0.868 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.253 0.747 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.000 1.000 36 H 0.003 0.997 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.566 23.391 9.617 25.297 hybrid contribution -0.671 -0.975 -0.785 1.420 sum -0.104 22.415 8.833 24.093 Atomic orbital electron populations 1.23028 0.68254 1.08775 1.07860 1.48809 1.12293 1.03243 1.45650 1.78792 0.97963 1.14134 1.18985 1.78608 1.10893 1.04621 1.16759 1.74959 1.20122 1.03396 1.20233 1.26461 0.85912 0.95369 1.00411 1.20295 1.05724 0.82370 0.98914 1.21629 1.03496 0.94100 0.95922 1.21334 1.01841 0.94391 0.82952 1.45878 1.69748 1.12028 1.09785 1.21231 0.74971 0.81784 0.92061 1.90661 1.51642 1.56545 1.47975 1.21637 1.04145 0.98312 0.92041 1.18700 0.94431 0.91150 0.95444 1.21760 1.45543 0.97332 0.93275 0.90676 1.26126 0.95010 0.97312 1.02071 1.70179 1.47490 1.06625 1.33480 0.85294 0.77622 0.78499 0.78949 1.17662 1.20770 1.20619 0.86153 0.86368 0.84642 0.85023 0.86788 0.90735 0.88930 0.92377 0.90910 0.74731 0.87674 0.88046 1.00020 0.99749 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 11.09 127.77 1.42 1.44 16 2 N -0.30 -3.68 3.75 -359.65 -1.35 -5.03 16 3 N -0.11 -2.33 13.29 37.02 0.49 -1.84 16 4 N -0.12 -3.00 13.43 37.01 0.50 -2.51 16 5 N -0.34 -7.89 12.36 -50.45 -0.62 -8.51 16 6 C 0.20 2.82 7.39 138.13 1.02 3.84 16 7 C -0.03 -0.23 5.36 29.85 0.16 -0.07 16 8 C -0.11 -0.97 5.31 30.60 0.16 -0.81 16 9 C 0.12 1.93 5.67 86.38 0.49 2.42 16 10 N -0.72 -15.69 5.56 -463.05 -2.57 -18.26 16 11 C 0.51 17.99 7.83 87.66 0.69 18.68 16 12 O -0.59 -26.98 15.98 -3.03 -0.05 -27.03 16 13 C -0.12 -4.59 5.64 29.85 0.17 -4.43 16 14 C 0.04 2.19 4.26 29.85 0.13 2.32 16 15 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 16 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 17 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 18 N -0.94 -58.81 13.29 21.45 0.28 -58.53 16 19 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 20 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 24 H 0.12 -0.11 8.14 -2.38 -0.02 -0.13 16 25 H 0.14 -0.64 7.75 -2.39 -0.02 -0.66 16 26 H 0.13 0.07 7.81 -2.39 -0.02 0.06 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.42 6.19 8.47 -92.71 -0.79 5.41 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 35 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 36 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -88.04 325.18 3.93 -84.11 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: 0.29 Total: -1.53 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 4.93 Total: -6.61 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -3.27 Total: -94.68 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -88.04 3.93 -84.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339018296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.722 kcal (2) G-P(sol) polarization free energy of solvation -88.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds