Wall clock time and date at job start Mon Mar 30 2020 01:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00250 * 2 1 4 4 H 1.48491 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46736 * 300.00242 * 3 2 1 6 6 H 1.48496 * 109.46994 * 59.99870 * 3 2 1 7 7 C 1.37880 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00229 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00470 * 180.02562 * 11 10 9 14 14 C 1.46948 * 120.66289 * 359.97303 * 13 11 10 15 15 C 1.53185 * 108.64068 * 126.06120 * 14 13 11 16 16 C 1.52835 * 109.50080 * 54.58693 * 15 14 13 17 17 H 1.09000 * 109.32084 * 179.11332 * 16 15 14 18 18 O 1.42798 * 109.94057 * 59.62325 * 16 15 14 19 19 C 1.42953 * 113.95376 * 177.61268 * 18 16 15 20 20 C 1.53066 * 109.50780 * 60.83762 * 19 18 16 21 21 C 1.53191 * 109.28876 * 302.71713 * 20 19 18 22 22 C 1.53112 * 109.92503 * 299.12185 * 16 15 14 23 23 H 1.08997 * 110.45339 * 299.75148 * 22 16 15 24 24 C 1.46868 * 120.67238 * 180.02562 * 13 11 10 25 25 H 0.97006 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46778 * 60.00279 * 9 7 2 27 27 H 1.09004 * 109.46862 * 300.00557 * 9 7 2 28 28 H 1.09000 * 109.46857 * 59.99952 * 10 9 7 29 29 H 1.09004 * 109.46943 * 300.00244 * 10 9 7 30 30 H 1.08997 * 109.61294 * 245.80909 * 14 13 11 31 31 H 1.09000 * 109.60865 * 6.31815 * 14 13 11 32 32 H 1.08997 * 109.46844 * 174.59996 * 15 14 13 33 33 H 1.09003 * 109.46065 * 294.58497 * 15 14 13 34 34 H 1.09003 * 109.46582 * 300.82264 * 19 18 16 35 35 H 1.09006 * 109.46285 * 180.84565 * 19 18 16 36 36 H 1.08999 * 109.50216 * 62.66260 * 20 19 18 37 37 H 1.08999 * 109.49752 * 182.73312 * 20 19 18 38 38 H 1.09008 * 109.56654 * 176.91205 * 21 20 19 39 39 H 1.08996 * 109.57345 * 297.15904 * 21 20 19 40 40 H 1.09000 * 109.56691 * 114.04922 * 24 13 11 41 41 H 1.09001 * 109.64694 * 353.77671 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1655 -6.1344 -0.0008 14 6 3.6349 -6.1515 -0.0003 15 6 4.1142 -7.0114 1.1734 16 6 3.4701 -8.3948 1.0888 17 1 3.8252 -9.0091 1.9161 18 8 3.8285 -9.0244 -0.1418 19 6 3.3138 -10.3502 -0.2869 20 6 1.7842 -10.3119 -0.2472 21 6 1.3280 -9.6663 1.0651 22 6 1.9465 -8.2669 1.1701 23 1 1.6528 -7.8048 2.1126 24 6 1.4461 -7.4148 -0.0019 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6043 -0.8905 30 1 3.9962 -6.5766 -0.9367 31 1 4.0125 -5.1353 0.1127 32 1 5.1986 -7.1123 1.1307 33 1 3.8303 -6.5354 2.1120 34 1 3.6829 -10.9741 0.5271 35 1 3.6422 -10.7650 -1.2400 36 1 1.4128 -9.7272 -1.0887 37 1 1.3931 -11.3275 -0.3090 38 1 0.2409 -9.5869 1.0742 39 1 1.6566 -10.2770 1.9060 40 1 1.6332 -7.9378 -0.9398 41 1 0.3767 -7.2344 0.1082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347436019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:28 Heat of formation + Delta-G solvation = -99.501580 kcal Electronic energy + Delta-G solvation = -21145.768408 eV Core-core repulsion = 18024.750016 eV Total energy + Delta-G solvation = -3121.018392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68570 -38.80295 -35.89119 -34.33662 -33.43135 -32.09778 -31.01690 -30.05195 -26.61483 -25.34744 -24.67529 -23.48610 -21.94838 -21.35525 -19.31949 -18.35812 -16.99434 -16.54082 -16.06292 -15.84836 -15.57094 -15.34804 -14.66097 -14.44409 -14.15392 -13.86394 -13.46481 -13.28509 -12.89105 -12.61872 -12.43451 -12.22212 -12.05593 -11.82265 -11.49504 -11.10825 -11.08810 -10.98900 -10.92464 -10.62383 -10.54889 -10.40843 -9.92472 -9.60855 -9.54196 -9.11904 -8.92489 -8.32713 -8.24750 -5.93492 -3.97647 3.26884 3.34356 3.36224 3.41770 3.45193 3.57069 4.42927 4.49215 4.51186 4.58784 4.67512 4.87681 4.95256 5.00863 5.18810 5.22640 5.29251 5.38103 5.41510 5.47033 5.56194 5.57800 5.62886 5.74296 5.77613 5.83559 5.93120 6.03699 6.06835 6.18182 6.25956 6.27962 6.81234 6.96853 7.03642 7.77867 7.84916 7.90120 8.10506 8.41922 8.81488 9.11226 9.65771 11.17546 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.042867 B = 0.003881 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.030870 B = 7212.423137 C = 7612.426649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.624 5.624 14 C 0.113 3.887 15 C -0.127 4.127 16 C 0.098 3.902 17 H 0.056 0.944 18 O -0.374 6.374 19 C 0.062 3.938 20 C -0.161 4.161 21 C -0.116 4.116 22 C -0.133 4.133 23 H 0.085 0.915 24 C 0.121 3.879 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 -22.217 1.887 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.413 6.413 13 N -0.359 5.359 14 C -0.010 4.010 15 C -0.166 4.166 16 C 0.040 3.960 17 H 0.074 0.926 18 O -0.293 6.293 19 C -0.014 4.014 20 C -0.198 4.198 21 C -0.154 4.154 22 C -0.152 4.152 23 H 0.103 0.897 24 C -0.002 4.002 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.996 -21.976 1.737 23.450 hybrid contribution 0.296 0.622 0.258 0.735 sum 8.292 -21.355 1.995 22.995 Atomic orbital electron populations 1.70016 1.06058 1.26411 1.50385 1.25030 0.94815 0.99215 0.95352 0.86541 0.80023 0.83876 0.77559 1.19735 1.21035 1.21047 1.21266 0.92955 0.91008 1.51129 0.92558 1.18911 0.93205 0.89420 0.98576 1.21871 1.00689 0.91990 1.02238 1.21579 0.88392 0.85506 0.74255 1.90647 1.14451 1.87210 1.48962 1.48263 1.06554 1.05722 1.75352 1.21607 0.79975 1.01103 0.98344 1.21915 1.00968 0.93594 1.00085 1.21942 0.93253 0.94125 0.86665 0.92644 1.87927 1.74193 1.28425 1.38753 1.22535 0.92964 0.84253 1.01688 1.22263 0.96988 1.01574 0.99011 1.21622 1.01150 0.95153 0.97470 1.22182 0.96143 0.96262 1.00660 0.89671 1.21490 0.97893 0.83641 0.97214 0.93044 0.95848 0.95887 0.90323 0.90293 0.90977 0.89018 0.89986 0.89930 0.93471 0.89005 0.90531 0.90964 0.91040 0.91671 0.91465 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.69 3.99 -27.89 -0.11 -2.80 16 11 C 0.51 10.45 7.70 -10.99 -0.08 10.36 16 12 O -0.54 -13.17 15.40 5.56 0.09 -13.08 16 13 N -0.62 -9.83 2.97 -172.74 -0.51 -10.34 16 14 C 0.11 1.41 6.13 -3.70 -0.02 1.39 16 15 C -0.13 -1.31 5.83 -26.72 -0.16 -1.46 16 16 C 0.10 0.99 2.73 -26.76 -0.07 0.92 16 17 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 18 O -0.37 -3.99 9.32 -35.23 -0.33 -4.32 16 19 C 0.06 0.50 6.84 37.19 0.25 0.76 16 20 C -0.16 -1.28 5.74 -26.60 -0.15 -1.43 16 21 C -0.12 -1.01 5.53 -26.44 -0.15 -1.16 16 22 C -0.13 -1.45 2.77 -90.22 -0.25 -1.70 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 C 0.12 1.68 5.30 -3.69 -0.02 1.66 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 29 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 30 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 31 H 0.09 1.12 5.94 -51.93 -0.31 0.81 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.69 6.37 -51.93 -0.33 0.36 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.90 5.82 -51.93 -0.30 0.60 16 41 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -34.10 317.40 -8.26 -42.36 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.71 Total: -2.83 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.29 Total: -6.39 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.22 Total: -37.33 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.24 Total: -17.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.10 -8.26 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347436019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.138 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds