Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00250 * 2 1 4 4 H 1.48491 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46736 * 300.00242 * 3 2 1 6 6 H 1.48496 * 109.46994 * 59.99870 * 3 2 1 7 7 C 1.37880 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00229 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00470 * 180.02562 * 11 10 9 14 14 C 1.46948 * 120.66289 * 359.97303 * 13 11 10 15 15 C 1.53185 * 108.64068 * 126.06120 * 14 13 11 16 16 C 1.52835 * 109.50080 * 54.58693 * 15 14 13 17 17 H 1.09000 * 109.32084 * 179.11332 * 16 15 14 18 18 O 1.42798 * 109.94057 * 59.62325 * 16 15 14 19 19 C 1.42953 * 113.95376 * 177.61268 * 18 16 15 20 20 C 1.53066 * 109.50780 * 60.83762 * 19 18 16 21 21 C 1.53191 * 109.28876 * 302.71713 * 20 19 18 22 22 C 1.53112 * 109.92503 * 299.12185 * 16 15 14 23 23 H 1.08997 * 110.45339 * 299.75148 * 22 16 15 24 24 C 1.46868 * 120.67238 * 180.02562 * 13 11 10 25 25 H 0.97006 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46778 * 60.00279 * 9 7 2 27 27 H 1.09004 * 109.46862 * 300.00557 * 9 7 2 28 28 H 1.09000 * 109.46857 * 59.99952 * 10 9 7 29 29 H 1.09004 * 109.46943 * 300.00244 * 10 9 7 30 30 H 1.08997 * 109.61294 * 245.80909 * 14 13 11 31 31 H 1.09000 * 109.60865 * 6.31815 * 14 13 11 32 32 H 1.08997 * 109.46844 * 174.59996 * 15 14 13 33 33 H 1.09003 * 109.46065 * 294.58497 * 15 14 13 34 34 H 1.09003 * 109.46582 * 300.82264 * 19 18 16 35 35 H 1.09006 * 109.46285 * 180.84565 * 19 18 16 36 36 H 1.08999 * 109.50216 * 62.66260 * 20 19 18 37 37 H 1.08999 * 109.49752 * 182.73312 * 20 19 18 38 38 H 1.09008 * 109.56654 * 176.91205 * 21 20 19 39 39 H 1.08996 * 109.57345 * 297.15904 * 21 20 19 40 40 H 1.09000 * 109.56691 * 114.04922 * 24 13 11 41 41 H 1.09001 * 109.64694 * 353.77671 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0011 13 7 2.1655 -6.1344 -0.0008 14 6 3.6349 -6.1515 -0.0003 15 6 4.1142 -7.0114 1.1734 16 6 3.4701 -8.3948 1.0888 17 1 3.8252 -9.0091 1.9161 18 8 3.8285 -9.0244 -0.1418 19 6 3.3138 -10.3502 -0.2869 20 6 1.7842 -10.3119 -0.2472 21 6 1.3280 -9.6663 1.0651 22 6 1.9465 -8.2669 1.1701 23 1 1.6528 -7.8048 2.1126 24 6 1.4461 -7.4148 -0.0019 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6043 -0.8905 30 1 3.9962 -6.5766 -0.9367 31 1 4.0125 -5.1353 0.1127 32 1 5.1986 -7.1123 1.1307 33 1 3.8303 -6.5354 2.1120 34 1 3.6829 -10.9741 0.5271 35 1 3.6422 -10.7650 -1.2400 36 1 1.4128 -9.7272 -1.0887 37 1 1.3931 -11.3275 -0.3090 38 1 0.2409 -9.5869 1.0742 39 1 1.6566 -10.2770 1.9060 40 1 1.6332 -7.9378 -0.9398 41 1 0.3767 -7.2344 0.1082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347436019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = -122.000275 kcal Electronic energy + Delta-G solvation = -21146.744025 eV Core-core repulsion = 18024.750016 eV Total energy + Delta-G solvation = -3121.994009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70813 -40.14891 -37.09095 -35.63361 -35.07003 -33.32712 -32.75863 -31.05658 -28.25459 -26.48142 -25.97083 -24.35642 -23.41196 -22.66433 -20.39894 -19.61431 -18.83165 -17.70780 -17.33579 -16.86260 -16.81041 -16.54315 -16.42677 -15.82343 -15.10199 -15.04589 -14.56343 -14.40169 -14.19025 -13.96687 -13.92733 -13.39598 -13.23228 -13.16395 -12.85003 -12.76491 -12.48827 -12.29102 -11.97297 -11.92484 -11.83651 -11.60747 -11.41895 -11.28120 -11.17404 -10.66343 -10.57785 -10.33233 -9.55766 -8.17784 -6.32088 1.42713 1.44428 1.57849 1.66660 2.05197 2.43786 2.86049 3.15273 3.56056 3.69837 3.79961 3.89289 4.01394 4.10384 4.16705 4.19761 4.33010 4.44887 4.50001 4.52300 4.56369 4.61414 4.73603 4.80450 4.81737 4.84978 4.96399 5.02351 5.07316 5.11086 5.16914 5.28882 5.34731 5.48278 5.61372 5.63595 5.84759 6.17348 6.33834 6.41963 6.86334 7.25280 7.38348 8.95325 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.042867 B = 0.003881 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.030870 B = 7212.423137 C = 7612.426649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.508 3.492 12 O -0.593 6.593 13 N -0.611 5.611 14 C 0.105 3.895 15 C -0.124 4.124 16 C 0.100 3.900 17 H 0.077 0.923 18 O -0.390 6.390 19 C 0.058 3.942 20 C -0.158 4.158 21 C -0.114 4.114 22 C -0.129 4.129 23 H 0.075 0.925 24 C 0.119 3.881 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.019 1.019 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.958 -23.352 2.333 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.154 4.154 11 C 0.299 3.701 12 O -0.474 6.474 13 N -0.344 5.344 14 C -0.017 4.017 15 C -0.162 4.162 16 C 0.042 3.958 17 H 0.095 0.905 18 O -0.310 6.310 19 C -0.018 4.018 20 C -0.196 4.196 21 C -0.152 4.152 22 C -0.149 4.149 23 H 0.094 0.906 24 C -0.003 4.003 25 H 0.071 0.929 26 H -0.002 1.002 27 H 0.000 1.000 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.311 -23.168 2.184 25.874 hybrid contribution -0.736 0.871 0.088 1.144 sum 10.575 -22.297 2.271 24.782 Atomic orbital electron populations 1.70197 1.08390 1.27744 1.51557 1.26163 0.95723 1.04019 0.94589 0.85246 0.79350 0.77935 0.77542 1.17454 1.20670 1.20579 1.21736 0.94027 0.91467 1.50685 0.90468 1.18694 0.93671 0.92553 0.94550 1.21630 0.99280 0.90050 1.04447 1.21437 0.87642 0.86734 0.74287 1.90626 1.16693 1.88049 1.52031 1.48258 1.08220 1.04950 1.73001 1.21911 0.77379 1.02285 1.00116 1.21931 1.02390 0.93146 0.98756 1.21955 0.91960 0.94467 0.87437 0.90493 1.87906 1.74412 1.29710 1.38922 1.22720 0.92643 0.83402 1.03059 1.22251 0.97289 1.02328 0.97703 1.21631 1.00725 0.93991 0.98827 1.22154 0.97502 0.96806 0.98405 0.90618 1.21604 0.96312 0.83147 0.99282 0.92867 1.00184 1.00038 0.87761 0.88097 0.90136 0.88491 0.87547 0.89834 0.91750 0.87871 0.92210 0.88922 0.91674 0.89678 0.90703 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.48 13.29 21.45 0.28 -60.19 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 3 Si 0.98 44.72 29.54 68.60 2.03 46.74 16 4 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 9 C 0.04 2.47 4.26 29.85 0.13 2.60 16 10 C -0.11 -4.85 3.99 29.85 0.12 -4.73 16 11 C 0.51 21.42 7.70 87.66 0.67 22.10 16 12 O -0.59 -31.09 15.40 -3.04 -0.05 -31.14 16 13 N -0.61 -19.19 2.97 -818.81 -2.43 -21.62 16 14 C 0.10 2.40 6.13 86.36 0.53 2.93 16 15 C -0.12 -2.18 5.83 30.60 0.18 -2.00 16 16 C 0.10 1.73 2.73 30.58 0.08 1.81 16 17 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 18 O -0.39 -7.14 9.32 -148.98 -1.39 -8.53 16 19 C 0.06 0.75 6.84 72.00 0.49 1.25 16 20 C -0.16 -2.16 5.74 30.68 0.18 -1.99 16 21 C -0.11 -1.78 5.53 30.78 0.17 -1.61 16 22 C -0.13 -2.67 2.77 -10.53 -0.03 -2.70 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 C 0.12 3.34 5.30 86.41 0.46 3.80 16 25 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 26 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 27 H -0.02 -1.22 8.10 -2.38 -0.02 -1.24 16 28 H 0.10 3.86 7.70 -2.39 -0.02 3.84 16 29 H 0.10 3.81 7.94 -2.39 -0.02 3.79 16 30 H 0.08 1.77 7.86 -2.39 -0.02 1.75 16 31 H 0.10 2.12 5.94 -2.39 -0.01 2.11 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.02 6.37 -2.39 -0.02 1.00 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 2.00 5.82 -2.39 -0.01 1.98 16 41 H 0.06 1.99 7.01 -2.39 -0.02 1.98 16 Total: -1.00 -77.95 317.40 3.12 -74.83 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.00 Total: 9.54 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 3.68 Total: -9.62 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.14 Total: -81.81 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.44 Total: -39.67 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.95 3.12 -74.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347436019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.172 kcal (2) G-P(sol) polarization free energy of solvation -77.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds