Wall clock time and date at job start Mon Mar 30 2020 00:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00038 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.47513 * 125.64492 * 359.69205 * 15 13 12 17 17 C 1.55335 * 104.87434 * 155.94379 * 16 15 13 18 18 H 1.09004 * 110.92370 * 154.16371 * 17 16 15 19 19 O 1.42902 * 111.22990 * 278.14628 * 17 16 15 20 20 C 1.54160 * 101.33251 * 36.22142 * 17 16 15 21 21 C 1.51930 * 121.73412 * 109.12684 * 20 17 16 22 22 C 1.51918 * 121.75449 * 181.86409 * 20 17 16 23 23 C 1.47287 * 125.64733 * 180.02562 * 15 13 12 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 33 33 H 1.09004 * 110.33638 * 274.92091 * 16 15 13 34 34 H 1.09005 * 110.33656 * 37.16089 * 16 15 13 35 35 H 0.96695 * 114.00188 * 292.04018 * 19 17 16 36 36 H 1.08997 * 117.52568 * 218.60359 * 21 20 17 37 37 H 1.09002 * 117.52619 * 3.78520 * 21 20 17 38 38 H 1.09007 * 117.52524 * 356.24355 * 22 20 17 39 39 H 1.08994 * 117.52971 * 141.42566 * 22 20 17 40 40 H 1.09001 * 109.97339 * 301.20201 * 23 15 13 41 41 H 1.09000 * 109.97234 * 62.47731 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7208 -7.4551 -0.0018 14 8 0.5079 -7.4551 -0.0018 15 7 2.3946 -8.6224 -0.0018 16 6 3.8625 -8.7676 -0.0083 17 6 4.1272 -10.1694 0.6063 18 1 5.0760 -10.5755 0.2552 19 8 4.0881 -10.1243 2.0340 20 6 2.9389 -10.9754 0.0453 21 6 3.1283 -12.0410 -1.0209 22 6 2.7235 -12.4361 0.4031 23 6 1.7871 -9.9641 -0.0024 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.1003 -6.0924 -0.8922 32 1 3.1016 -6.0924 0.8877 33 1 4.2434 -8.7203 -1.0285 34 1 4.3226 -7.9926 0.6049 35 1 4.8163 -9.6278 2.4319 36 1 2.3690 -12.1153 -1.7994 37 1 4.1480 -12.2638 -1.3349 38 1 3.4771 -12.9187 1.0254 39 1 1.6981 -12.7701 0.5610 40 1 1.1498 -10.0847 0.8736 41 1 1.2027 -10.1079 -0.9111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347493280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:03 Heat of formation + Delta-G solvation = -74.216254 kcal Electronic energy + Delta-G solvation = -19942.734775 eV Core-core repulsion = 16822.812837 eV Total energy + Delta-G solvation = -3119.921938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57957 -38.73024 -36.27306 -35.12154 -34.82238 -32.59479 -30.04453 -29.25629 -27.83114 -25.34051 -23.51588 -22.86939 -22.07894 -19.99532 -19.77356 -19.25676 -17.72940 -16.92979 -16.21077 -16.12751 -15.69266 -15.22225 -14.89225 -14.81066 -14.40935 -13.97054 -13.47663 -13.27340 -12.67124 -12.55244 -12.53904 -12.11951 -11.96335 -11.64429 -11.58842 -11.34007 -10.98315 -10.94959 -10.61946 -10.51854 -10.49891 -10.40872 -10.37049 -9.75172 -9.58605 -9.20039 -8.97068 -8.73600 -8.28388 -5.93242 -3.95874 2.73096 2.81769 3.13442 3.36337 3.40694 3.42872 3.70766 3.99351 4.08705 4.35015 4.50024 4.53015 4.70649 4.83167 5.02447 5.17396 5.20173 5.25289 5.31603 5.36913 5.37544 5.41948 5.48615 5.57418 5.65913 5.69348 5.84802 6.10474 6.16324 6.34101 6.57292 6.86528 7.04130 7.21093 7.22243 7.43020 7.75981 7.92632 8.08342 8.24204 8.49871 9.11672 9.67536 11.18114 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.046689 B = 0.002833 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.564472 B = 9880.181528 C =10192.220635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.528 3.472 14 O -0.533 6.533 15 N -0.620 5.620 16 C 0.073 3.927 17 C 0.125 3.875 18 H 0.079 0.921 19 O -0.550 6.550 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.147 4.147 23 C 0.150 3.850 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.382 0.618 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.602 -25.855 -0.307 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.172 4.172 13 C 0.318 3.682 14 O -0.409 6.409 15 N -0.356 5.356 16 C -0.050 4.050 17 C 0.065 3.935 18 H 0.096 0.904 19 O -0.356 6.356 20 C -0.146 4.146 21 C -0.191 4.191 22 C -0.184 4.184 23 C 0.027 3.973 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.230 0.770 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.184 -25.981 -0.402 27.908 hybrid contribution 1.056 1.286 0.063 1.665 sum 11.239 -24.695 -0.339 27.135 Atomic orbital electron populations 1.69970 1.06051 1.26610 1.50851 1.25045 0.94844 0.99214 0.95472 0.86668 0.79571 0.83267 0.78528 1.20292 1.21316 1.20294 1.21248 0.92929 0.91222 1.50516 0.92822 1.19092 0.94059 0.91225 0.97335 1.21643 0.99069 0.93975 1.00013 1.21472 0.97043 0.92660 1.03025 1.21768 1.00034 0.91673 1.03710 1.20823 0.87933 0.84274 0.75130 1.90715 1.14026 1.86964 1.49178 1.48495 1.06711 1.05496 1.74934 1.23108 0.82086 0.98184 1.01653 1.22269 0.96428 0.93274 0.81501 0.90370 1.86545 1.53657 1.77312 1.18077 1.21485 0.96939 0.91098 1.05029 1.22960 1.03309 1.00382 0.92496 1.22733 1.03299 0.94645 0.97729 1.21100 0.93627 0.80466 1.02070 0.92986 0.96584 0.96570 0.93509 0.93497 0.91757 0.91763 0.89296 0.89292 0.90276 0.89798 0.77033 0.87872 0.88199 0.88035 0.88203 0.90847 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 12 C -0.13 -1.89 4.70 -27.89 -0.13 -2.02 16 13 C 0.53 8.26 7.85 -10.99 -0.09 8.17 16 14 O -0.53 -10.60 16.31 5.55 0.09 -10.51 16 15 N -0.62 -7.57 3.34 -170.57 -0.57 -8.14 16 16 C 0.07 0.59 6.46 -2.25 -0.01 0.58 16 17 C 0.13 0.88 4.24 -24.89 -0.11 0.78 16 18 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 19 O -0.55 -4.46 13.48 -35.23 -0.47 -4.93 16 20 C -0.14 -1.17 2.01 -154.82 -0.31 -1.48 16 21 C -0.15 -0.91 10.31 -27.16 -0.28 -1.19 16 22 C -0.15 -0.99 10.33 -27.17 -0.28 -1.27 16 23 C 0.15 1.68 6.72 -3.43 -0.02 1.66 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.58 7.48 -51.93 -0.39 0.19 16 35 H 0.38 1.47 9.12 45.56 0.42 1.88 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -35.99 341.60 -8.39 -44.37 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -6.26 Total: -3.06 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.04 Total: -12.84 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.17 Total: -35.23 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.38 Total: -15.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.99 -8.39 -44.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347493280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.842 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds