Wall clock time and date at job start Mon Mar 30 2020 00:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00038 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.47513 * 125.64492 * 359.69205 * 15 13 12 17 17 C 1.55335 * 104.87434 * 155.94379 * 16 15 13 18 18 H 1.09004 * 110.92370 * 154.16371 * 17 16 15 19 19 O 1.42902 * 111.22990 * 278.14628 * 17 16 15 20 20 C 1.54160 * 101.33251 * 36.22142 * 17 16 15 21 21 C 1.51930 * 121.73412 * 109.12684 * 20 17 16 22 22 C 1.51918 * 121.75449 * 181.86409 * 20 17 16 23 23 C 1.47287 * 125.64733 * 180.02562 * 15 13 12 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 33 33 H 1.09004 * 110.33638 * 274.92091 * 16 15 13 34 34 H 1.09005 * 110.33656 * 37.16089 * 16 15 13 35 35 H 0.96695 * 114.00188 * 292.04018 * 19 17 16 36 36 H 1.08997 * 117.52568 * 218.60359 * 21 20 17 37 37 H 1.09002 * 117.52619 * 3.78520 * 21 20 17 38 38 H 1.09007 * 117.52524 * 356.24355 * 22 20 17 39 39 H 1.08994 * 117.52971 * 141.42566 * 22 20 17 40 40 H 1.09001 * 109.97339 * 301.20201 * 23 15 13 41 41 H 1.09000 * 109.97234 * 62.47731 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7208 -7.4551 -0.0018 14 8 0.5079 -7.4551 -0.0018 15 7 2.3946 -8.6224 -0.0018 16 6 3.8625 -8.7676 -0.0083 17 6 4.1272 -10.1694 0.6063 18 1 5.0760 -10.5755 0.2552 19 8 4.0881 -10.1243 2.0340 20 6 2.9389 -10.9754 0.0453 21 6 3.1283 -12.0410 -1.0209 22 6 2.7235 -12.4361 0.4031 23 6 1.7871 -9.9641 -0.0024 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.1003 -6.0924 -0.8922 32 1 3.1016 -6.0924 0.8877 33 1 4.2434 -8.7203 -1.0285 34 1 4.3226 -7.9926 0.6049 35 1 4.8163 -9.6278 2.4319 36 1 2.3690 -12.1153 -1.7994 37 1 4.1480 -12.2638 -1.3349 38 1 3.4771 -12.9187 1.0254 39 1 1.6981 -12.7701 0.5610 40 1 1.1498 -10.0847 0.8736 41 1 1.2027 -10.1079 -0.9111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347493280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:02 Heat of formation + Delta-G solvation = -99.902485 kcal Electronic energy + Delta-G solvation = -19943.848613 eV Core-core repulsion = 16822.812837 eV Total energy + Delta-G solvation = -3121.035777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.42797 -39.72422 -36.81336 -36.66139 -35.93005 -34.61811 -31.70427 -29.99489 -29.00192 -27.03214 -24.50961 -23.62282 -23.34039 -21.77094 -20.50820 -20.19967 -18.44191 -18.32107 -17.93251 -17.24090 -16.60641 -16.37089 -16.18163 -15.96665 -15.48092 -14.96655 -14.54084 -14.46705 -14.27579 -13.69773 -13.64200 -13.39581 -13.20411 -13.14707 -12.79130 -12.40862 -12.37806 -12.17808 -12.16217 -11.98985 -11.53095 -11.39702 -11.37622 -11.23881 -11.10845 -10.94082 -10.76042 -10.54608 -9.70710 -8.18584 -6.31189 1.40338 1.44724 1.52594 1.55859 1.87407 2.42163 2.62269 3.14006 3.14063 3.44875 3.49431 3.72125 3.82027 3.98786 4.01201 4.09268 4.27460 4.45711 4.49419 4.60729 4.62267 4.68495 4.73887 4.76102 4.78494 4.78604 4.84599 4.99230 5.03530 5.15780 5.21892 5.24032 5.32902 5.35376 5.55428 5.76851 5.87306 6.24665 6.41898 6.87175 6.90371 7.09634 7.38516 8.93686 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.046689 B = 0.002833 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.564472 B = 9880.181528 C =10192.220635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.019 3.981 10 C -0.093 4.093 11 C -0.097 4.097 12 C -0.118 4.118 13 C 0.521 3.479 14 O -0.593 6.593 15 N -0.616 5.616 16 C 0.064 3.936 17 C 0.131 3.869 18 H 0.114 0.886 19 O -0.574 6.574 20 C -0.161 4.161 21 C -0.135 4.135 22 C -0.150 4.150 23 C 0.144 3.856 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.017 1.017 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.399 0.601 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.530 -26.500 -0.675 30.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.131 4.131 11 C -0.135 4.135 12 C -0.158 4.158 13 C 0.311 3.689 14 O -0.474 6.474 15 N -0.350 5.350 16 C -0.058 4.058 17 C 0.072 3.928 18 H 0.132 0.868 19 O -0.383 6.383 20 C -0.162 4.162 21 C -0.171 4.171 22 C -0.187 4.187 23 C 0.022 3.978 24 H 0.072 0.928 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.250 0.750 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.186 -26.665 -0.764 30.214 hybrid contribution -0.218 1.415 0.192 1.444 sum 13.968 -25.250 -0.572 28.862 Atomic orbital electron populations 1.70138 1.08153 1.27843 1.51834 1.26123 0.95785 1.03838 0.94745 0.85413 0.78147 0.77550 0.79403 1.18792 1.21127 1.18839 1.21729 0.93795 0.92142 1.50363 0.91408 1.19054 0.94695 0.93855 0.94255 1.21431 0.97784 0.92413 1.01453 1.21264 0.97502 0.93770 1.00943 1.21626 0.98826 0.88870 1.06437 1.21045 0.87333 0.85682 0.74802 1.90690 1.16515 1.87902 1.52288 1.48534 1.08915 1.04776 1.72736 1.23528 0.79073 0.99675 1.03551 1.22359 0.97202 0.92225 0.81012 0.86837 1.86512 1.55091 1.77831 1.18876 1.21509 0.96204 0.91027 1.07445 1.23061 1.04608 0.97717 0.91760 1.22805 1.03425 0.93578 0.98897 1.21129 0.94981 0.81322 1.00409 0.92846 0.99775 0.99841 0.91940 0.91828 0.94100 0.93903 0.86298 0.86519 0.88070 0.88115 0.75026 0.87899 0.85808 0.87124 0.88795 0.93566 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.86 13.29 21.45 0.28 -59.57 16 2 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.09 -3.88 5.15 30.59 0.16 -3.73 16 11 C -0.10 -3.67 4.50 30.59 0.14 -3.54 16 12 C -0.12 -3.18 4.70 29.85 0.14 -3.04 16 13 C 0.52 16.29 7.85 87.66 0.69 16.98 16 14 O -0.59 -24.92 16.31 -3.05 -0.05 -24.97 16 15 N -0.62 -14.44 3.34 -811.94 -2.71 -17.15 16 16 C 0.06 0.81 6.46 86.99 0.56 1.37 16 17 C 0.13 1.42 4.24 31.79 0.13 1.56 16 18 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 19 O -0.57 -7.86 13.48 -148.98 -2.01 -9.87 16 20 C -0.16 -2.31 2.01 -52.38 -0.11 -2.41 16 21 C -0.13 -1.22 10.31 30.32 0.31 -0.91 16 22 C -0.15 -1.77 10.33 30.31 0.31 -1.45 16 23 C 0.14 3.28 6.72 86.34 0.58 3.86 16 24 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 30 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 31 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.12 2.52 7.85 -2.39 -0.02 2.50 16 33 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.10 0.97 7.48 -2.38 -0.02 0.95 16 35 H 0.40 1.90 9.12 -74.06 -0.68 1.23 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 Total: -1.00 -82.12 341.60 1.63 -80.49 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 0.32 Total: 5.65 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 3.76 Total: -21.62 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.42 Total: -76.72 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -2.06 Total: -34.83 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -82.12 1.63 -80.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347493280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.414 kcal (2) G-P(sol) polarization free energy of solvation -82.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds