Wall clock time and date at job start Mon Mar 30 2020 00:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47002 * 2 1 4 4 C 1.46495 * 119.99611 * 269.99651 * 3 2 1 5 5 C 1.34774 * 119.99664 * 89.99776 * 3 2 1 6 6 O 1.21281 * 120.00389 * 0.02562 * 5 3 2 7 7 C 1.50703 * 119.99618 * 179.97438 * 5 3 2 8 8 N 1.46491 * 109.47207 * 180.02562 * 7 5 3 9 9 C 1.35317 * 125.87029 * 125.29585 * 8 7 5 10 10 C 1.35352 * 106.17693 * 180.18381 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.08996 * 109.47724 * 300.00190 * 1 2 3 24 24 H 1.09002 * 109.47109 * 60.00249 * 1 2 3 25 25 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47724 * 239.99810 * 2 1 3 27 27 H 1.09002 * 109.47109 * 119.99751 * 2 1 3 28 28 H 1.09004 * 109.47104 * 269.99453 * 4 3 2 29 29 H 1.09000 * 109.47677 * 29.99979 * 4 3 2 30 30 H 1.09004 * 109.46811 * 150.00074 * 4 3 2 31 31 H 1.08997 * 109.46964 * 60.00001 * 7 5 3 32 32 H 1.08999 * 109.47194 * 299.99933 * 7 5 3 33 33 H 1.08002 * 126.91295 * 0.03783 * 9 8 7 34 34 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 35 35 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 37 37 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2429 2.0166 1.1672 6 8 2.0411 1.4447 2.2175 7 6 2.7457 3.4372 1.1672 8 7 2.9089 3.8975 2.5483 9 6 4.0402 4.4111 3.0845 10 6 3.7495 4.6976 4.3750 11 6 4.6831 5.2886 5.3998 12 7 4.5075 6.7425 5.4393 13 6 5.2509 7.4987 6.3058 14 1 5.9698 7.0236 6.9570 15 6 5.0805 8.8756 6.3473 16 7 5.7953 9.6024 7.1798 17 14 3.8366 9.6971 5.2216 18 1 2.5192 9.7631 5.9039 19 1 4.2950 11.0717 4.8967 20 1 3.7065 8.9098 3.9692 21 7 2.4689 4.3582 4.5603 22 7 1.9994 3.8873 3.4592 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2920 1.9006 -1.5833 29 1 1.5818 1.6876 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 2.0281 4.0766 0.6531 32 1 3.7061 3.4827 0.6536 33 1 4.9856 4.5600 2.5841 34 1 5.7131 5.0542 5.1310 35 1 4.4589 4.8688 6.3804 36 1 3.8616 7.1692 4.8547 37 1 5.6765 10.5648 7.2086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352983363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:25 Heat of formation + Delta-G solvation = 63.289214 kcal Electronic energy + Delta-G solvation = -19845.877957 eV Core-core repulsion = 16660.671111 eV Total energy + Delta-G solvation = -3185.206846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.27820 -41.03221 -37.18064 -36.91902 -35.56141 -33.81105 -32.49470 -31.94428 -29.56799 -27.82496 -27.56079 -24.72831 -24.34921 -22.94648 -22.32535 -20.43127 -19.78447 -18.66679 -18.25140 -17.34128 -16.83994 -16.65791 -16.43121 -15.95988 -15.73955 -15.02636 -14.88790 -14.62185 -14.47243 -14.26530 -13.93405 -13.59601 -13.45685 -13.35668 -13.03589 -12.90689 -12.89693 -12.51866 -12.11415 -12.01093 -11.87358 -11.80506 -11.53994 -11.01997 -10.79926 -10.22879 -9.79607 -9.31654 -8.01609 -5.35312 0.56827 1.23055 1.35541 1.36416 1.42054 1.45039 1.49734 1.97171 2.48924 3.14957 3.29092 3.41173 3.69599 3.82990 3.91920 3.99794 4.07537 4.22645 4.23944 4.28897 4.48484 4.52545 4.72906 4.77842 4.83881 4.95088 4.97767 5.11891 5.14446 5.23506 5.45045 5.59263 5.75890 6.18689 6.21827 6.95833 7.06174 7.50857 7.80809 8.01693 9.19620 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042023 B = 0.003551 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.142305 B = 7882.623716 C = 8099.083915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.608 5.608 4 C 0.060 3.940 5 C 0.494 3.506 6 O -0.569 6.569 7 C 0.092 3.908 8 N -0.282 5.282 9 C -0.013 4.013 10 C -0.047 4.047 11 C 0.241 3.759 12 N -0.752 5.752 13 C -0.232 4.232 14 H 0.066 0.934 15 C -0.059 4.059 16 N -0.981 5.981 17 Si 0.953 3.047 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.255 1.255 21 N -0.303 5.303 22 N -0.095 5.095 23 H 0.026 0.974 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.187 0.813 33 H 0.241 0.759 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.363 0.637 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 -18.855 -28.445 34.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.342 5.342 4 C -0.081 4.081 5 C 0.280 3.720 6 O -0.447 6.447 7 C -0.031 4.031 8 N -0.076 5.076 9 C -0.164 4.164 10 C -0.185 4.185 11 C 0.114 3.886 12 N -0.397 5.397 13 C -0.363 4.363 14 H 0.084 0.916 15 C -0.251 4.251 16 N -0.631 5.631 17 Si 0.780 3.220 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.180 1.180 21 N -0.171 5.171 22 N -0.075 5.075 23 H 0.045 0.955 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.175 0.825 32 H 0.204 0.796 33 H 0.257 0.743 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.196 0.804 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.930 -19.529 -27.465 34.621 hybrid contribution 0.213 0.905 -0.164 0.944 sum -7.717 -18.625 -27.629 34.202 Atomic orbital electron populations 1.22088 0.95624 1.02963 1.01538 1.21557 0.94621 0.81564 1.03628 1.47979 1.65010 1.14801 1.06375 1.22307 1.03776 0.98496 0.83545 1.20797 0.78319 0.88673 0.84179 1.90839 1.52742 1.68107 1.33018 1.22478 1.09808 0.93730 0.77105 1.47104 1.08271 1.40372 1.11820 1.23979 0.94746 1.03334 0.94368 1.22312 0.93325 1.06428 0.96388 1.18891 0.94483 0.81959 0.93306 1.42671 1.47671 1.02707 1.46693 1.19061 1.14587 0.89615 1.13032 0.91599 1.25410 1.01751 0.96804 1.01108 1.69862 1.45606 1.05740 1.41901 0.85445 0.78800 0.77894 0.79823 1.21546 1.21400 1.17984 1.75059 1.10724 1.14102 1.17185 1.78268 1.17263 1.18766 0.93159 0.95465 0.90806 0.90337 0.86793 0.92555 0.89792 0.88810 0.89002 0.82494 0.79596 0.74275 0.91176 0.95274 0.80419 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.24 71.98 0.74 -1.17 16 2 C 0.11 1.21 6.13 86.38 0.53 1.73 16 3 N -0.61 -6.43 2.87 -846.75 -2.43 -8.86 16 4 C 0.06 0.00 10.24 127.77 1.31 1.31 16 5 C 0.49 9.31 7.69 87.66 0.67 9.98 16 6 O -0.57 -18.19 15.25 -3.03 -0.05 -18.23 16 7 C 0.09 1.16 5.49 85.64 0.47 1.63 16 8 N -0.28 -7.40 3.20 -351.48 -1.12 -8.53 16 9 C -0.01 -0.35 11.50 83.49 0.96 0.61 16 10 C -0.05 -1.74 6.61 41.60 0.28 -1.46 16 11 C 0.24 10.03 6.82 85.63 0.58 10.62 16 12 N -0.75 -37.42 5.40 -347.18 -1.87 -39.30 16 13 C -0.23 -13.64 10.47 84.03 0.88 -12.76 16 14 H 0.07 4.15 8.06 -2.91 -0.02 4.12 16 15 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 16 N -0.98 -63.75 13.97 21.65 0.30 -63.45 16 17 Si 0.95 47.31 27.74 68.60 1.90 49.21 16 18 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.26 -11.50 6.52 99.48 0.65 -10.85 16 21 N -0.30 -12.94 12.41 -48.60 -0.60 -13.54 16 22 N -0.10 -3.56 12.13 37.02 0.45 -3.11 16 23 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.11 0.48 8.07 -2.39 -0.02 0.46 16 27 H 0.06 0.97 7.42 -2.39 -0.02 0.96 16 28 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.09 -0.21 8.07 -2.39 -0.02 -0.23 16 30 H 0.09 -0.29 6.44 -2.38 -0.02 -0.30 16 31 H 0.16 1.05 7.40 -2.39 -0.02 1.03 16 32 H 0.19 0.33 8.03 -2.39 -0.02 0.31 16 33 H 0.24 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.36 17.83 5.52 -92.71 -0.51 17.32 16 37 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -92.48 318.63 3.97 -88.52 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.51 Total: 9.90 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.89 Total: 7.39 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -5.28 Total: -136.79 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.90 Total: 49.21 kcal Total: -92.48 3.97 -88.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352983363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.806 kcal (2) G-P(sol) polarization free energy of solvation -92.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds