Wall clock time and date at job start Mon Mar 30 2020 00:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47022 * 2 1 4 4 N 1.46497 * 109.47076 * 180.02562 * 3 2 1 5 5 N 1.40596 * 127.37591 * 270.11747 * 4 3 2 6 6 N 1.28906 * 106.81137 * 180.26828 * 5 4 3 7 7 N 1.28422 * 110.32024 * 359.76745 * 6 5 4 8 8 C 1.31472 * 110.50764 * 0.02562 * 7 6 5 9 9 N 1.38376 * 126.44125 * 179.97438 * 8 7 6 10 10 C 1.47899 * 111.00168 * 239.89932 * 9 8 7 11 11 C 1.53997 * 107.05889 * 145.84134 * 10 9 8 12 12 C 1.54593 * 105.13807 * 358.77516 * 11 10 9 13 13 O 1.42904 * 110.72258 * 96.40366 * 12 11 10 14 14 C 1.50705 * 110.72583 * 219.68092 * 12 11 10 15 15 H 1.07993 * 119.99953 * 118.54560 * 14 12 11 16 16 C 1.37878 * 119.99835 * 298.55374 * 14 12 11 17 17 N 1.31514 * 120.00255 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99873 * 179.97438 * 16 14 12 19 19 H 1.48511 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47273 * 119.99517 * 18 16 14 21 21 H 1.48497 * 109.47130 * 239.99689 * 18 16 14 22 22 C 1.48538 * 110.99883 * 357.29685 * 9 8 7 23 23 H 1.08999 * 109.47226 * 299.99964 * 1 2 3 24 24 H 1.09001 * 109.47459 * 59.99987 * 1 2 3 25 25 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47226 * 240.00035 * 2 1 3 27 27 H 1.08996 * 109.47189 * 119.99641 * 2 1 3 28 28 H 1.08999 * 109.47091 * 59.99953 * 3 2 1 29 29 H 1.09009 * 109.47034 * 299.99963 * 3 2 1 30 30 H 1.09004 * 109.91646 * 26.49161 * 10 9 8 31 31 H 1.08998 * 109.92144 * 265.19552 * 10 9 8 32 32 H 1.09004 * 110.30998 * 117.69119 * 11 10 9 33 33 H 1.08998 * 110.30811 * 239.85930 * 11 10 9 34 34 H 0.96700 * 114.00523 * 61.45046 * 13 12 11 35 35 H 0.96994 * 120.00103 * 180.02562 * 17 16 14 36 36 H 1.09007 * 110.66246 * 318.71204 * 22 9 8 37 37 H 1.08993 * 110.66698 * 81.83898 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3589 1.4401 1.1163 6 7 5.5656 1.4469 0.6630 7 7 5.5596 1.4485 -0.6212 8 6 4.3261 1.4432 -1.0760 9 7 3.9400 1.4435 -2.4048 10 6 3.1213 2.6346 -2.7187 11 6 3.4508 3.0404 -4.1672 12 6 4.5223 2.0294 -4.6359 13 8 3.9216 0.9579 -5.3660 14 6 5.5770 2.7161 -5.4650 15 1 6.6051 2.7212 -5.1344 16 6 5.2292 3.3379 -6.6454 17 7 3.9773 3.3314 -7.0481 18 14 6.5364 4.1896 -7.6727 19 1 7.8561 4.0553 -7.0050 20 1 6.5955 3.5626 -9.0175 21 1 6.1968 5.6285 -7.8119 22 6 5.1213 1.5162 -3.3024 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8901 30 1 3.3737 3.4483 -2.0387 31 1 2.0625 2.3906 -2.6331 32 1 2.5611 2.9658 -4.7927 33 1 3.8496 4.0544 -4.1947 34 1 3.4648 1.2378 -6.1710 35 1 3.7327 3.7685 -7.8787 36 1 5.8565 2.2213 -2.9142 37 1 5.5653 0.5296 -3.4344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354302603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:14 Heat of formation + Delta-G solvation = 73.697279 kcal Electronic energy + Delta-G solvation = -21136.431646 eV Core-core repulsion = 17951.676128 eV Total energy + Delta-G solvation = -3184.755518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.69982 -38.85506 -36.33185 -35.07913 -32.68025 -32.26337 -31.68538 -29.15227 -28.45394 -27.14041 -25.04453 -23.23839 -22.38470 -21.61233 -20.75395 -19.62485 -17.60127 -16.93029 -16.48396 -16.11013 -15.48422 -15.08170 -14.81608 -14.30355 -13.82890 -13.57973 -13.02628 -12.97373 -12.69126 -12.60706 -12.34587 -12.08225 -11.80633 -11.66348 -11.46910 -11.29682 -11.02471 -10.92074 -10.83743 -10.64055 -10.48423 -10.31669 -10.14965 -9.92695 -9.41839 -8.73085 -8.47218 -8.26538 -6.34248 -4.42131 1.26941 1.94061 2.58387 3.16374 3.25958 3.31084 3.82921 4.22631 4.28360 4.55209 4.73654 4.87815 4.93667 5.00760 5.11972 5.21664 5.39733 5.45472 5.54798 5.58068 5.67905 5.75095 5.79932 5.88926 5.97190 6.06804 6.19591 6.33031 6.56969 6.70434 6.84130 7.17509 7.20861 7.27240 7.67951 7.97025 8.61895 8.81107 9.26122 9.35951 10.73449 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.005497 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.293983 B = 5092.633154 C = 5758.480752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.124 3.876 4 N -0.393 5.393 5 N -0.104 5.104 6 N -0.034 5.034 7 N -0.361 5.361 8 C 0.429 3.571 9 N -0.431 5.431 10 C 0.037 3.963 11 C -0.128 4.128 12 C 0.257 3.743 13 O -0.579 6.579 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.902 3.098 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.283 1.283 22 C 0.069 3.931 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.381 0.619 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 -1.688 9.004 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C 0.002 3.998 4 N -0.192 5.192 5 N -0.091 5.091 6 N -0.031 5.031 7 N -0.220 5.220 8 C 0.063 3.937 9 N -0.156 5.156 10 C -0.089 4.089 11 C -0.167 4.167 12 C 0.216 3.784 13 O -0.388 6.388 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.209 1.209 22 C -0.057 4.057 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.230 0.770 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.468 -2.436 10.265 12.926 hybrid contribution -0.193 1.379 -1.401 1.975 sum -7.662 -1.057 8.864 11.764 Atomic orbital electron populations 1.21675 0.93888 1.02660 1.02270 1.21904 0.97002 0.95058 1.03903 1.22132 0.72672 0.99689 1.05271 1.51403 1.08994 1.54715 1.04108 1.82413 0.95151 1.24773 1.06794 1.77822 1.12993 1.09053 1.03185 1.74924 1.16750 1.27356 1.02990 1.23859 0.86144 0.93733 0.89933 1.61583 1.20645 1.38151 0.95188 1.23191 0.97017 0.87997 1.00671 1.23037 1.01853 1.01520 0.90272 1.19373 0.89116 0.83085 0.86794 1.86154 1.74729 1.36347 1.41522 1.21559 0.95033 1.34508 1.06460 0.91489 1.24982 0.95726 0.95103 0.97166 1.69715 1.16419 1.44292 1.23025 0.86374 0.81786 0.78950 0.79995 1.19459 1.20707 1.20864 1.23442 0.88615 1.03056 0.90545 0.92375 0.91962 0.91792 0.90360 0.91054 0.88123 0.87799 0.93703 0.90230 0.90300 0.90839 0.76951 0.92233 0.90265 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.14 -1.42 6.26 -26.73 -0.17 -1.59 16 3 C 0.12 1.38 6.40 -4.04 -0.03 1.36 16 4 N -0.39 -6.15 3.69 -61.86 -0.23 -6.37 16 5 N -0.10 -1.81 13.93 60.35 0.84 -0.97 16 6 N -0.03 -0.67 13.38 60.35 0.81 0.14 16 7 N -0.36 -7.23 11.00 30.09 0.33 -6.90 16 8 C 0.43 7.82 7.01 -320.43 -2.25 5.58 16 9 N -0.43 -8.00 5.32 -170.89 -0.91 -8.90 16 10 C 0.04 0.63 5.51 -2.75 -0.02 0.62 16 11 C -0.13 -2.61 5.26 -25.37 -0.13 -2.74 16 12 C 0.26 5.89 0.95 -89.91 -0.09 5.81 16 13 O -0.58 -13.95 13.09 -35.23 -0.46 -14.41 16 14 C -0.54 -13.54 8.14 -34.44 -0.28 -13.82 16 15 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 16 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 17 N -0.90 -22.27 11.02 55.43 0.61 -21.66 16 18 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.07 1.45 5.26 -1.90 -0.01 1.44 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.07 5.45 -51.92 -0.28 0.79 16 30 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 31 H 0.08 1.13 6.66 -51.93 -0.35 0.79 16 32 H 0.08 1.65 7.99 -51.93 -0.41 1.23 16 33 H 0.07 1.58 7.84 -51.93 -0.41 1.17 16 34 H 0.38 9.20 7.48 45.56 0.34 9.54 16 35 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 36 H 0.08 1.70 7.43 -51.93 -0.39 1.32 16 37 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -27.31 305.92 -6.51 -33.82 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.40 Total: 8.27 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.69 Total: -2.38 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 1.45 Total: -44.66 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.46 Total: -14.41 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.31 -6.51 -33.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354302603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.515 kcal (2) G-P(sol) polarization free energy of solvation -27.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds