Wall clock time and date at job start Mon Mar 30 2020 00:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47022 * 2 1 4 4 N 1.46497 * 109.47076 * 180.02562 * 3 2 1 5 5 N 1.40596 * 127.37591 * 270.11747 * 4 3 2 6 6 N 1.28906 * 106.81137 * 180.26828 * 5 4 3 7 7 N 1.28422 * 110.32024 * 359.76745 * 6 5 4 8 8 C 1.31472 * 110.50764 * 0.02562 * 7 6 5 9 9 N 1.38376 * 126.44125 * 179.97438 * 8 7 6 10 10 C 1.47899 * 111.00168 * 239.89932 * 9 8 7 11 11 C 1.53997 * 107.05889 * 145.84134 * 10 9 8 12 12 C 1.54593 * 105.13807 * 358.77516 * 11 10 9 13 13 O 1.42904 * 110.72258 * 96.40366 * 12 11 10 14 14 C 1.50705 * 110.72583 * 219.68092 * 12 11 10 15 15 H 1.07993 * 119.99953 * 118.54560 * 14 12 11 16 16 C 1.37878 * 119.99835 * 298.55374 * 14 12 11 17 17 N 1.31514 * 120.00255 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99873 * 179.97438 * 16 14 12 19 19 H 1.48511 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47273 * 119.99517 * 18 16 14 21 21 H 1.48497 * 109.47130 * 239.99689 * 18 16 14 22 22 C 1.48538 * 110.99883 * 357.29685 * 9 8 7 23 23 H 1.08999 * 109.47226 * 299.99964 * 1 2 3 24 24 H 1.09001 * 109.47459 * 59.99987 * 1 2 3 25 25 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47226 * 240.00035 * 2 1 3 27 27 H 1.08996 * 109.47189 * 119.99641 * 2 1 3 28 28 H 1.08999 * 109.47091 * 59.99953 * 3 2 1 29 29 H 1.09009 * 109.47034 * 299.99963 * 3 2 1 30 30 H 1.09004 * 109.91646 * 26.49161 * 10 9 8 31 31 H 1.08998 * 109.92144 * 265.19552 * 10 9 8 32 32 H 1.09004 * 110.30998 * 117.69119 * 11 10 9 33 33 H 1.08998 * 110.30811 * 239.85930 * 11 10 9 34 34 H 0.96700 * 114.00523 * 61.45046 * 13 12 11 35 35 H 0.96994 * 120.00103 * 180.02562 * 17 16 14 36 36 H 1.09007 * 110.66246 * 318.71204 * 22 9 8 37 37 H 1.08993 * 110.66698 * 81.83898 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3589 1.4401 1.1163 6 7 5.5656 1.4469 0.6630 7 7 5.5596 1.4485 -0.6212 8 6 4.3261 1.4432 -1.0760 9 7 3.9400 1.4435 -2.4048 10 6 3.1213 2.6346 -2.7187 11 6 3.4508 3.0404 -4.1672 12 6 4.5223 2.0294 -4.6359 13 8 3.9216 0.9579 -5.3660 14 6 5.5770 2.7161 -5.4650 15 1 6.6051 2.7212 -5.1344 16 6 5.2292 3.3379 -6.6454 17 7 3.9773 3.3314 -7.0481 18 14 6.5364 4.1896 -7.6727 19 1 7.8561 4.0553 -7.0050 20 1 6.5955 3.5626 -9.0175 21 1 6.1968 5.6285 -7.8119 22 6 5.1213 1.5162 -3.3024 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8901 30 1 3.3737 3.4483 -2.0387 31 1 2.0625 2.3906 -2.6331 32 1 2.5611 2.9658 -4.7927 33 1 3.8496 4.0544 -4.1947 34 1 3.4648 1.2378 -6.1710 35 1 3.7327 3.7685 -7.8787 36 1 5.8565 2.2213 -2.9142 37 1 5.5653 0.5296 -3.4344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354302603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:13 Heat of formation + Delta-G solvation = 55.117467 kcal Electronic energy + Delta-G solvation = -21137.237327 eV Core-core repulsion = 17951.676128 eV Total energy + Delta-G solvation = -3185.561199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.10475 -40.44631 -37.50899 -36.67744 -34.18252 -33.73765 -33.21084 -30.67363 -30.12462 -28.14523 -26.86127 -24.43608 -23.86147 -22.60443 -22.17384 -21.36087 -19.27793 -18.37146 -17.88054 -17.59629 -16.92621 -16.51274 -16.34729 -15.74225 -15.20453 -14.72145 -14.59059 -14.36318 -14.21986 -13.92983 -13.54742 -13.36636 -13.25115 -13.07276 -12.79255 -12.62826 -12.56901 -12.47571 -12.25745 -12.24305 -11.89031 -11.76903 -11.45310 -11.37417 -11.20437 -10.62795 -10.18518 -9.87868 -8.24028 -6.37807 -0.10482 0.68189 1.13098 1.41141 1.46658 1.56043 2.36166 2.48050 3.01220 3.06943 3.46963 3.64065 3.74767 3.93773 4.05978 4.08325 4.11178 4.12328 4.27196 4.38853 4.52390 4.58142 4.64548 4.76983 4.88152 4.97967 5.04399 5.09139 5.15256 5.21098 5.37403 5.43370 5.53636 5.72930 5.79114 6.11738 6.66659 7.33609 7.39000 7.45275 8.82232 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.005497 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.293983 B = 5092.633154 C = 5758.480752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.112 3.888 4 N -0.375 5.375 5 N -0.096 5.096 6 N -0.054 5.054 7 N -0.388 5.388 8 C 0.420 3.580 9 N -0.427 5.427 10 C 0.044 3.956 11 C -0.118 4.118 12 C 0.245 3.755 13 O -0.586 6.586 14 C -0.563 4.563 15 H 0.053 0.947 16 C 0.040 3.960 17 N -0.905 5.905 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.277 1.277 22 C 0.078 3.922 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.377 0.623 35 H 0.271 0.729 36 H 0.070 0.930 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -1.215 9.761 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.175 5.175 5 N -0.084 5.084 6 N -0.050 5.050 7 N -0.247 5.247 8 C 0.053 3.947 9 N -0.151 5.151 10 C -0.081 4.081 11 C -0.157 4.157 12 C 0.204 3.796 13 O -0.394 6.394 14 C -0.601 4.601 15 H 0.071 0.929 16 C -0.162 4.162 17 N -0.544 5.544 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.202 1.202 22 C -0.048 4.048 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.166 -1.964 11.040 14.483 hybrid contribution 0.270 1.207 -1.599 2.021 sum -8.896 -0.758 9.441 12.994 Atomic orbital electron populations 1.21658 0.91530 1.03350 1.03395 1.21860 0.98871 0.93971 1.02583 1.22677 0.69891 1.00874 1.07380 1.51681 1.10282 1.52849 1.02687 1.82318 0.95004 1.23678 1.07360 1.77815 1.13810 1.10423 1.02969 1.74832 1.18301 1.28031 1.03543 1.23695 0.86305 0.94560 0.90116 1.61586 1.19458 1.38966 0.95095 1.23213 0.98665 0.87887 0.98382 1.22777 1.00516 0.99907 0.92463 1.19497 0.89594 0.83429 0.87050 1.86143 1.74758 1.37047 1.41492 1.21770 0.95135 1.35588 1.07621 0.92855 1.25526 0.97336 0.95484 0.97824 1.69761 1.17124 1.44258 1.23225 0.85569 0.79592 0.78273 0.78555 1.20021 1.20481 1.20245 1.23149 0.89298 1.01897 0.90468 0.90676 0.91399 0.91401 0.92513 0.91601 0.85237 0.86437 0.92557 0.86653 0.90848 0.92388 0.77319 0.91942 0.91173 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.13 -2.39 6.26 30.59 0.19 -2.20 16 3 C 0.11 2.11 6.40 86.38 0.55 2.67 16 4 N -0.37 -10.95 3.69 -349.62 -1.29 -12.24 16 5 N -0.10 -3.18 13.93 37.02 0.52 -2.67 16 6 N -0.05 -2.06 13.38 37.02 0.50 -1.57 16 7 N -0.39 -15.45 11.00 -58.70 -0.65 -16.10 16 8 C 0.42 14.83 7.01 260.65 1.83 16.66 16 9 N -0.43 -15.38 5.32 -694.59 -3.69 -19.07 16 10 C 0.04 1.40 5.51 86.45 0.48 1.87 16 11 C -0.12 -4.72 5.26 31.47 0.17 -4.55 16 12 C 0.24 11.29 0.95 -10.34 -0.01 11.28 16 13 O -0.59 -28.38 13.09 -148.98 -1.95 -30.33 16 14 C -0.56 -28.78 8.14 25.60 0.21 -28.57 16 15 H 0.05 2.79 7.78 -2.91 -0.02 2.77 16 16 C 0.04 1.99 5.28 84.65 0.45 2.44 16 17 N -0.90 -44.70 11.02 21.45 0.24 -44.47 16 18 Si 0.95 40.47 29.54 68.60 2.03 42.50 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 22 C 0.08 3.33 5.26 86.65 0.46 3.79 16 23 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.13 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.12 1.95 5.45 -2.38 -0.01 1.94 16 30 H 0.06 1.68 7.75 -2.39 -0.02 1.66 16 31 H 0.12 2.86 6.66 -2.39 -0.02 2.85 16 32 H 0.07 3.00 7.99 -2.39 -0.02 2.98 16 33 H 0.06 2.48 7.84 -2.39 -0.02 2.46 16 34 H 0.38 18.37 7.48 -74.06 -0.55 17.81 16 35 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 36 H 0.07 3.09 7.43 -2.38 -0.02 3.07 16 37 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -58.34 305.92 1.25 -57.08 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.53 Total: 24.44 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.03 Total: 2.42 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -4.38 Total: -96.11 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.95 Total: -30.33 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -58.34 1.25 -57.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354302603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.201 kcal (2) G-P(sol) polarization free energy of solvation -58.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds