Wall clock time and date at job start Mon Mar 30 2020 00:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47203 * 2 1 4 4 N 1.46501 * 109.47124 * 184.42096 * 3 2 1 5 5 N 1.40586 * 127.38588 * 275.66017 * 4 3 2 6 6 N 1.28908 * 106.81793 * 180.26729 * 5 4 3 7 7 N 1.28419 * 110.31807 * 359.76185 * 6 5 4 8 8 C 1.31481 * 110.50524 * 0.02562 * 7 6 5 9 9 N 1.38386 * 126.43561 * 179.97438 * 8 7 6 10 10 C 1.47442 * 110.99756 * 56.85317 * 9 8 7 11 11 C 1.54326 * 107.36727 * 236.65610 * 10 9 8 12 12 C 1.55399 * 102.89788 * 337.89736 * 11 10 9 13 13 O 1.42906 * 110.86764 * 277.38980 * 12 11 10 14 14 C 1.50696 * 111.06027 * 153.65162 * 12 11 10 15 15 H 1.08002 * 120.00132 * 247.58438 * 14 12 11 16 16 C 1.37880 * 119.99908 * 67.57654 * 14 12 11 17 17 N 1.31510 * 120.00375 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99842 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47489 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47184 * 120.00538 * 18 16 14 21 21 H 1.48497 * 109.47594 * 240.00390 * 18 16 14 22 22 C 1.47836 * 111.00215 * 296.00290 * 9 8 7 23 23 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47207 * 300.00051 * 1 2 3 25 25 H 1.09007 * 109.47163 * 59.99661 * 1 2 3 26 26 H 1.09001 * 109.46847 * 240.00352 * 2 1 3 27 27 H 1.08998 * 109.46950 * 120.00208 * 2 1 3 28 28 H 1.09002 * 109.46864 * 64.42884 * 3 2 1 29 29 H 1.08996 * 109.47840 * 304.42441 * 3 2 1 30 30 H 1.08997 * 109.89245 * 356.13729 * 10 9 8 31 31 H 1.08995 * 109.89457 * 117.17252 * 10 9 8 32 32 H 1.09010 * 110.70459 * 96.17762 * 11 10 9 33 33 H 1.08993 * 110.70298 * 219.41212 * 11 10 9 34 34 H 0.96693 * 114.00067 * 292.30630 * 13 12 11 35 35 H 0.97001 * 120.00589 * 179.97438 * 17 16 14 36 36 H 1.09002 * 110.37498 * 265.19141 * 22 9 8 37 37 H 1.09002 * 110.37876 * 27.53996 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5011 1.4438 -0.1065 5 7 4.4332 1.3059 0.9370 6 7 5.6042 1.3689 0.4018 7 7 5.5059 1.5270 -0.8688 8 6 4.2427 1.5761 -1.2305 9 7 3.7621 1.7381 -2.5180 10 6 4.2808 0.6863 -3.4117 11 6 5.0006 1.3897 -4.5817 12 6 4.3619 2.8063 -4.5806 13 8 3.1150 2.8032 -5.2787 14 6 5.3037 3.8254 -5.1683 15 1 5.7282 4.5942 -4.5397 16 6 5.6236 3.7762 -6.5086 17 7 5.1065 2.8403 -7.2742 18 14 6.7916 5.0390 -7.2369 19 1 7.2320 5.9774 -6.1735 20 1 7.9754 4.3473 -7.8074 21 1 6.0966 5.7960 -8.3088 22 6 4.1495 3.0552 -3.0664 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7429 1.9328 0.9270 29 1 1.6135 1.9788 -0.8476 30 1 4.9840 0.0534 -2.8706 31 1 3.4564 0.0833 -3.7924 32 1 6.0726 1.4506 -4.3939 33 1 4.8016 0.8751 -5.5217 34 1 3.1973 2.6511 -6.2300 35 1 5.3312 2.8059 -8.2171 36 1 3.3517 3.7812 -2.9095 37 1 5.0747 3.4011 -2.6054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354302604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:16 Heat of formation + Delta-G solvation = 73.617545 kcal Electronic energy + Delta-G solvation = -21073.464787 eV Core-core repulsion = 17888.705812 eV Total energy + Delta-G solvation = -3184.758976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.74338 -38.70000 -36.28558 -35.04093 -32.72341 -32.16393 -31.54268 -29.06803 -28.42466 -27.15234 -24.95602 -23.24076 -22.53717 -21.64072 -20.34015 -19.81090 -17.65479 -16.97056 -16.24426 -16.09565 -15.45478 -15.00314 -14.81875 -14.07281 -13.83558 -13.53901 -13.15396 -12.97468 -12.73645 -12.40900 -12.10258 -11.98274 -11.79111 -11.74612 -11.39837 -11.32928 -11.02537 -10.93573 -10.73641 -10.56760 -10.48293 -10.24106 -10.18790 -9.71953 -9.41021 -8.71582 -8.50821 -8.22359 -6.32344 -4.39827 1.17433 1.91299 2.50674 3.18006 3.27174 3.31768 3.89021 4.25518 4.36030 4.57658 4.77077 4.91922 4.94905 5.01207 5.24272 5.39905 5.44644 5.54291 5.66456 5.70534 5.75182 5.79558 5.89552 5.93247 5.96052 6.15599 6.25886 6.38714 6.53447 6.84769 6.99824 7.28136 7.30551 7.35985 7.71667 7.96116 8.62120 8.73117 9.29205 9.44573 10.75474 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.005368 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.841361 B = 5215.160600 C = 5777.017513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.127 3.873 4 N -0.369 5.369 5 N -0.099 5.099 6 N -0.042 5.042 7 N -0.351 5.351 8 C 0.426 3.574 9 N -0.462 5.462 10 C 0.056 3.944 11 C -0.144 4.144 12 C 0.259 3.741 13 O -0.582 6.582 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.067 3.933 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.386 0.614 35 H 0.269 0.731 36 H 0.081 0.919 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 -4.646 9.073 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.005 3.995 4 N -0.167 5.167 5 N -0.085 5.085 6 N -0.038 5.038 7 N -0.207 5.207 8 C 0.060 3.940 9 N -0.190 5.190 10 C -0.070 4.070 11 C -0.183 4.183 12 C 0.218 3.782 13 O -0.392 6.392 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.129 4.129 17 N -0.537 5.537 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.059 4.059 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.663 -4.751 10.477 13.822 hybrid contribution 0.771 0.556 -1.467 1.748 sum -6.892 -4.195 9.010 12.095 Atomic orbital electron populations 1.21677 0.93798 1.02565 1.02485 1.21871 0.97143 0.95058 1.03473 1.22086 0.72357 0.99566 1.05463 1.51669 1.09415 1.50327 1.05294 1.82472 0.93098 1.23278 1.09648 1.77898 1.14834 1.09647 1.01460 1.75026 1.16311 1.23776 1.05628 1.23638 0.85696 0.94212 0.90498 1.60919 1.55724 1.07275 0.95124 1.22929 0.98344 0.92126 0.93590 1.23370 0.99503 0.99148 0.96278 1.19489 0.82448 0.90810 0.85452 1.86070 1.31489 1.95426 1.26220 1.21523 1.27225 1.14011 0.94649 0.91698 1.24973 0.95618 0.95457 0.96845 1.69562 1.44524 1.32936 1.06654 0.86356 0.80384 0.81142 0.79087 1.19567 1.20743 1.20735 1.23274 0.99811 0.86029 0.96762 0.91903 0.92321 0.91757 0.90864 0.91120 0.88296 0.86856 0.92929 0.90219 0.91448 0.89893 0.76184 0.92089 0.90057 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.14 -1.32 6.26 -26.73 -0.17 -1.49 16 3 C 0.13 1.42 6.51 -4.04 -0.03 1.39 16 4 N -0.37 -5.76 3.69 -61.86 -0.23 -5.98 16 5 N -0.10 -1.69 13.93 60.35 0.84 -0.85 16 6 N -0.04 -0.81 13.38 60.35 0.81 0.00 16 7 N -0.35 -7.02 11.62 30.10 0.35 -6.67 16 8 C 0.43 7.73 6.26 -320.40 -2.00 5.73 16 9 N -0.46 -8.57 5.15 -171.65 -0.88 -9.46 16 10 C 0.06 1.05 6.80 -2.83 -0.02 1.03 16 11 C -0.14 -3.13 5.65 -24.76 -0.14 -3.27 16 12 C 0.26 6.05 0.89 -89.49 -0.08 5.97 16 13 O -0.58 -14.11 13.18 -35.23 -0.46 -14.58 16 14 C -0.54 -13.75 8.25 -34.44 -0.28 -14.03 16 15 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 16 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 17 N -0.90 -22.79 10.78 55.43 0.60 -22.19 16 18 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 C 0.07 1.39 5.84 -2.30 -0.01 1.38 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 30 H 0.05 0.96 7.35 -51.93 -0.38 0.58 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.54 8.04 -51.92 -0.42 1.12 16 33 H 0.08 1.87 7.84 -51.93 -0.41 1.46 16 34 H 0.39 9.60 6.93 45.56 0.32 9.91 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.47 7.48 -51.93 -0.39 1.08 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -27.38 311.19 -6.40 -33.77 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.62 Total: 8.45 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.46 Total: -2.24 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 1.48 Total: -45.15 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.46 Total: -14.58 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.38 -6.40 -33.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354302604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.391 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds