Wall clock time and date at job start Mon Mar 30 2020 00:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47203 * 2 1 4 4 N 1.46501 * 109.47124 * 184.42096 * 3 2 1 5 5 N 1.40586 * 127.38588 * 275.66017 * 4 3 2 6 6 N 1.28908 * 106.81793 * 180.26729 * 5 4 3 7 7 N 1.28419 * 110.31807 * 359.76185 * 6 5 4 8 8 C 1.31481 * 110.50524 * 0.02562 * 7 6 5 9 9 N 1.38386 * 126.43561 * 179.97438 * 8 7 6 10 10 C 1.47442 * 110.99756 * 56.85317 * 9 8 7 11 11 C 1.54326 * 107.36727 * 236.65610 * 10 9 8 12 12 C 1.55399 * 102.89788 * 337.89736 * 11 10 9 13 13 O 1.42906 * 110.86764 * 277.38980 * 12 11 10 14 14 C 1.50696 * 111.06027 * 153.65162 * 12 11 10 15 15 H 1.08002 * 120.00132 * 247.58438 * 14 12 11 16 16 C 1.37880 * 119.99908 * 67.57654 * 14 12 11 17 17 N 1.31510 * 120.00375 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99842 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47489 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47184 * 120.00538 * 18 16 14 21 21 H 1.48497 * 109.47594 * 240.00390 * 18 16 14 22 22 C 1.47836 * 111.00215 * 296.00290 * 9 8 7 23 23 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47207 * 300.00051 * 1 2 3 25 25 H 1.09007 * 109.47163 * 59.99661 * 1 2 3 26 26 H 1.09001 * 109.46847 * 240.00352 * 2 1 3 27 27 H 1.08998 * 109.46950 * 120.00208 * 2 1 3 28 28 H 1.09002 * 109.46864 * 64.42884 * 3 2 1 29 29 H 1.08996 * 109.47840 * 304.42441 * 3 2 1 30 30 H 1.08997 * 109.89245 * 356.13729 * 10 9 8 31 31 H 1.08995 * 109.89457 * 117.17252 * 10 9 8 32 32 H 1.09010 * 110.70459 * 96.17762 * 11 10 9 33 33 H 1.08993 * 110.70298 * 219.41212 * 11 10 9 34 34 H 0.96693 * 114.00067 * 292.30630 * 13 12 11 35 35 H 0.97001 * 120.00589 * 179.97438 * 17 16 14 36 36 H 1.09002 * 110.37498 * 265.19141 * 22 9 8 37 37 H 1.09002 * 110.37876 * 27.53996 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5011 1.4438 -0.1065 5 7 4.4332 1.3059 0.9370 6 7 5.6042 1.3689 0.4018 7 7 5.5059 1.5270 -0.8688 8 6 4.2427 1.5761 -1.2305 9 7 3.7621 1.7381 -2.5180 10 6 4.2808 0.6863 -3.4117 11 6 5.0006 1.3897 -4.5817 12 6 4.3619 2.8063 -4.5806 13 8 3.1150 2.8032 -5.2787 14 6 5.3037 3.8254 -5.1683 15 1 5.7282 4.5942 -4.5397 16 6 5.6236 3.7762 -6.5086 17 7 5.1065 2.8403 -7.2742 18 14 6.7916 5.0390 -7.2369 19 1 7.2320 5.9774 -6.1735 20 1 7.9754 4.3473 -7.8074 21 1 6.0966 5.7960 -8.3088 22 6 4.1495 3.0552 -3.0664 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7429 1.9328 0.9270 29 1 1.6135 1.9788 -0.8476 30 1 4.9840 0.0534 -2.8706 31 1 3.4564 0.0833 -3.7924 32 1 6.0726 1.4506 -4.3939 33 1 4.8016 0.8751 -5.5217 34 1 3.1973 2.6511 -6.2300 35 1 5.3312 2.8059 -8.2171 36 1 3.3517 3.7812 -2.9095 37 1 5.0747 3.4011 -2.6054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354302604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:15 Heat of formation + Delta-G solvation = 55.124566 kcal Electronic energy + Delta-G solvation = -21074.266703 eV Core-core repulsion = 17888.705812 eV Total energy + Delta-G solvation = -3185.560891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.15196 -40.35183 -37.38961 -36.73598 -34.11256 -33.76469 -33.09110 -30.65788 -30.14468 -28.17232 -26.78559 -24.45835 -24.00980 -22.62266 -21.84144 -21.58921 -19.35193 -18.38522 -17.77890 -17.51274 -16.93939 -16.58186 -16.21502 -15.74643 -15.00596 -14.83454 -14.63107 -14.54878 -13.90448 -13.81476 -13.63663 -13.28736 -13.21953 -13.05150 -12.92315 -12.67934 -12.53461 -12.40582 -12.25861 -12.19416 -11.99039 -11.75450 -11.38825 -11.30663 -11.13214 -10.63369 -10.15114 -10.04365 -8.25286 -6.39147 -0.20497 0.64942 1.04131 1.40822 1.45524 1.54977 2.36203 2.50162 3.00783 3.15043 3.49470 3.75500 3.79139 3.96454 4.07447 4.16151 4.19183 4.19556 4.27515 4.44249 4.56855 4.63648 4.65365 4.78533 4.84983 5.01124 5.09288 5.10111 5.16528 5.32891 5.39362 5.43597 5.50170 5.77204 5.84429 6.05634 6.64304 7.31064 7.32598 7.48875 8.81176 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.005368 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.841361 B = 5215.160600 C = 5777.017513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.115 3.885 4 N -0.351 5.351 5 N -0.089 5.089 6 N -0.061 5.061 7 N -0.376 5.376 8 C 0.415 3.585 9 N -0.447 5.447 10 C 0.065 3.935 11 C -0.136 4.136 12 C 0.248 3.752 13 O -0.584 6.584 14 C -0.561 4.561 15 H 0.054 0.946 16 C 0.038 3.962 17 N -0.909 5.909 18 Si 0.957 3.043 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.276 1.276 22 C 0.076 3.924 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.381 0.619 35 H 0.272 0.728 36 H 0.087 0.913 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -4.803 9.798 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.005 4.005 4 N -0.149 5.149 5 N -0.076 5.076 6 N -0.057 5.057 7 N -0.233 5.233 8 C 0.048 3.952 9 N -0.175 5.175 10 C -0.061 4.061 11 C -0.175 4.175 12 C 0.207 3.793 13 O -0.394 6.394 14 C -0.600 4.600 15 H 0.072 0.928 16 C -0.164 4.164 17 N -0.549 5.549 18 Si 0.783 3.217 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.201 1.201 22 C -0.050 4.050 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.881 -4.918 11.220 15.131 hybrid contribution 1.079 0.593 -1.645 2.055 sum -7.802 -4.325 9.575 13.086 Atomic orbital electron populations 1.21657 0.91722 1.03336 1.03264 1.21835 0.98751 0.93606 1.02679 1.22614 0.69634 1.01074 1.07166 1.51938 1.10681 1.48365 1.03952 1.82388 0.92983 1.22291 1.09955 1.77888 1.15645 1.10943 1.01231 1.74932 1.17730 1.24427 1.06245 1.23471 0.85713 0.95357 0.90692 1.60905 1.55133 1.06141 0.95306 1.22859 0.98823 0.91965 0.92502 1.23160 0.98609 0.98679 0.97062 1.19593 0.81959 0.91164 0.86594 1.86056 1.31918 1.95498 1.25879 1.21760 1.28285 1.14706 0.95216 0.92767 1.25570 0.96766 0.96926 0.97092 1.69617 1.44845 1.33514 1.06875 0.85521 0.78760 0.79187 0.78232 1.19910 1.20489 1.20149 1.23048 0.99493 0.87308 0.95172 0.91177 0.90774 0.91759 0.92460 0.91135 0.85570 0.86312 0.92496 0.88296 0.93240 0.90995 0.76749 0.91789 0.89446 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.13 -2.20 6.26 30.59 0.19 -2.01 16 3 C 0.11 2.25 6.51 86.38 0.56 2.82 16 4 N -0.35 -10.31 3.69 -349.62 -1.29 -11.60 16 5 N -0.09 -2.94 13.93 37.02 0.52 -2.42 16 6 N -0.06 -2.31 13.38 37.02 0.50 -1.81 16 7 N -0.38 -14.89 11.62 -58.69 -0.68 -15.57 16 8 C 0.41 14.60 6.26 260.65 1.63 16.24 16 9 N -0.45 -16.12 5.15 -696.98 -3.59 -19.71 16 10 C 0.06 2.36 6.80 86.65 0.59 2.95 16 11 C -0.14 -5.93 5.65 31.87 0.18 -5.75 16 12 C 0.25 11.60 0.89 -10.06 -0.01 11.59 16 13 O -0.58 -28.18 13.18 -148.98 -1.96 -30.14 16 14 C -0.56 -29.09 8.25 25.60 0.21 -28.88 16 15 H 0.05 2.85 7.77 -2.91 -0.02 2.83 16 16 C 0.04 1.90 5.29 84.66 0.45 2.35 16 17 N -0.91 -46.10 10.78 21.45 0.23 -45.87 16 18 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 22 C 0.08 3.15 5.84 86.77 0.51 3.66 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.12 2.28 8.09 -2.39 -0.02 2.26 16 30 H 0.06 2.04 7.35 -2.39 -0.02 2.02 16 31 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.05 2.30 8.04 -2.38 -0.02 2.28 16 33 H 0.07 3.27 7.84 -2.39 -0.02 3.25 16 34 H 0.38 19.00 6.93 -74.06 -0.51 18.49 16 35 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 36 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.06 2.43 7.48 -2.39 -0.02 2.42 16 Total: -1.00 -57.52 311.19 1.34 -56.18 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.57 Total: 25.83 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.03 Total: 2.01 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -4.32 Total: -96.98 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.96 Total: -30.14 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -57.52 1.34 -56.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354302604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.305 kcal (2) G-P(sol) polarization free energy of solvation -57.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds