Wall clock time and date at job start Mon Mar 30 2020 00:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48505 * 109.47095 * 270.00115 * 3 2 1 5 5 H 1.48494 * 109.47182 * 30.00639 * 3 2 1 6 6 H 1.48500 * 109.46728 * 150.00699 * 3 2 1 7 7 C 1.37877 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46632 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46784 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00115 * 179.97438 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 N 1.33309 * 126.54982 * 269.68790 * 18 17 16 20 20 N 1.29002 * 107.35464 * 179.83401 * 19 18 17 21 21 N 1.28786 * 108.72526 * 0.43219 * 20 19 18 22 22 H 0.96997 * 125.44735 * 179.72062 * 21 20 19 23 23 N 1.28884 * 109.09854 * 359.72584 * 21 20 19 24 24 H 0.97009 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 29 29 H 1.09002 * 109.47193 * 60.00246 * 11 10 9 30 30 H 1.08992 * 109.47333 * 299.99245 * 11 10 9 31 31 H 0.97003 * 120.00244 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 33 33 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 37 37 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0018 13 6 1.9826 -7.3714 -0.0019 14 8 0.7901 -7.5929 -0.0020 15 6 2.9618 -8.5169 -0.0020 16 6 2.1967 -9.8418 -0.0027 17 6 3.1910 -11.0048 -0.0021 18 6 2.4374 -12.3099 -0.0023 19 7 2.0450 -13.0001 1.0686 20 7 1.4309 -14.0523 0.6444 21 7 1.4367 -14.0434 -0.6434 22 1 1.0441 -14.7238 -1.2125 23 7 2.0476 -12.9858 -1.0551 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 2.8717 -3.6044 0.8894 28 1 2.8717 -3.6044 -0.8905 29 1 0.8536 -5.0445 -0.8914 30 1 0.8531 -5.0451 0.8886 31 1 3.3856 -5.9235 -0.0021 32 1 3.5884 -8.4592 0.8880 33 1 3.5885 -8.4590 -0.8919 34 1 1.5704 -9.8992 -0.8930 35 1 1.5698 -9.8998 0.8870 36 1 3.8183 -10.9470 -0.8917 37 1 3.8169 -10.9472 0.8882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443694755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:37 Heat of formation + Delta-G solvation = 52.175555 kcal Electronic energy + Delta-G solvation = -18645.489443 eV Core-core repulsion = 15459.800673 eV Total energy + Delta-G solvation = -3185.688770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.79105 -39.55741 -36.03858 -35.29048 -34.37482 -33.31654 -32.85227 -31.22469 -28.78989 -26.57407 -24.88122 -23.94270 -22.71150 -21.59556 -20.70852 -19.81438 -19.47209 -17.39171 -16.90945 -16.39863 -16.07337 -15.56079 -15.05502 -14.72609 -14.45344 -14.23637 -13.70118 -13.57815 -12.82676 -12.58781 -12.27775 -12.20867 -11.88369 -11.73724 -11.63780 -11.60075 -11.38255 -10.97941 -10.90599 -10.73385 -10.62004 -10.58755 -9.87032 -9.86862 -9.36065 -9.11545 -8.76310 -8.37639 -6.02169 -4.05350 0.80291 1.75996 1.98690 2.80547 3.30495 3.33629 3.37093 3.40001 3.61901 3.96571 4.43866 4.61192 4.72768 4.78455 5.05000 5.17863 5.27148 5.30792 5.33547 5.37074 5.48778 5.75169 5.77839 5.87089 6.04743 6.08788 6.16639 6.50253 6.59991 6.83782 7.00513 7.63168 7.72825 7.75752 7.89799 7.96577 8.36865 8.42623 9.01383 9.58831 11.09084 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.076786 B = 0.002163 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.564019 B =12941.638490 C =13116.285720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.727 5.727 13 C 0.505 3.495 14 O -0.546 6.546 15 C -0.139 4.139 16 C -0.099 4.099 17 C -0.025 4.025 18 C 0.180 3.820 19 N -0.275 5.275 20 N -0.054 5.054 21 N -0.232 5.232 22 H 0.474 0.526 23 N -0.300 5.300 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.399 0.601 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.203 -26.127 -2.085 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.378 5.378 13 C 0.291 3.709 14 O -0.424 6.424 15 C -0.179 4.179 16 C -0.139 4.139 17 C -0.065 4.065 18 C -0.103 4.103 19 N -0.148 5.148 20 N -0.049 5.049 21 N -0.078 5.078 22 H 0.328 0.672 23 N -0.152 5.152 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.232 0.768 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.906 -26.637 -1.788 27.576 hybrid contribution 0.790 0.998 -0.620 1.416 sum 7.696 -25.639 -2.408 26.877 Atomic orbital electron populations 1.69972 1.06062 1.26683 1.50544 1.25042 0.94874 0.99337 0.95297 0.86572 0.79790 0.83409 0.78082 1.20669 1.21208 1.19892 1.21204 0.92990 0.90944 1.50929 0.92633 1.19036 0.93878 0.90899 0.97650 1.21883 0.99739 0.93381 1.00848 1.21637 0.91942 0.85222 1.01927 1.46239 1.10782 1.06034 1.74766 1.20614 0.89738 0.84191 0.76332 1.90712 1.17107 1.84877 1.49702 1.21633 0.98499 0.93088 1.04728 1.21289 0.97226 0.90706 1.04640 1.20064 0.96481 0.84816 1.05172 1.25743 1.00716 0.99859 0.83978 1.75907 1.11926 1.00599 1.26340 1.78970 1.15273 1.16697 0.93969 1.47805 1.36631 1.17401 1.05927 0.67240 1.74732 1.14138 0.98470 1.27823 0.92927 0.96300 0.96279 0.92713 0.92749 0.91869 0.91830 0.76777 0.88505 0.88614 0.90626 0.90389 0.88522 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 12 N -0.73 -9.81 5.56 -60.29 -0.33 -10.14 16 13 C 0.51 6.88 7.83 -10.99 -0.09 6.80 16 14 O -0.55 -9.98 15.98 5.55 0.09 -9.89 16 15 C -0.14 -1.14 5.70 -27.89 -0.16 -1.30 16 16 C -0.10 -0.90 4.49 -26.73 -0.12 -1.02 16 17 C -0.02 -0.17 5.84 -27.88 -0.16 -0.33 16 18 C 0.18 1.70 7.62 -156.63 -1.19 0.50 16 19 N -0.27 -3.02 12.50 32.45 0.41 -2.61 16 20 N -0.05 -0.51 13.48 60.35 0.81 0.30 16 21 N -0.23 -1.57 7.91 60.34 0.48 -1.09 16 22 H 0.47 0.96 8.96 -340.52 -3.05 -2.10 16 23 N -0.30 -2.63 12.36 32.47 0.40 -2.23 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -35.92 325.01 -7.98 -43.90 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -8.01 Total: -4.71 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.43 Total: -8.74 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 2.50 Total: -41.86 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.92 -7.98 -43.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443694755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.076 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds