Wall clock time and date at job start Mon Mar 30 2020 00:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48505 * 109.47095 * 270.00115 * 3 2 1 5 5 H 1.48494 * 109.47182 * 30.00639 * 3 2 1 6 6 H 1.48500 * 109.46728 * 150.00699 * 3 2 1 7 7 C 1.37877 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46632 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46784 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00115 * 179.97438 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 N 1.33309 * 126.54982 * 269.68790 * 18 17 16 20 20 N 1.29002 * 107.35464 * 179.83401 * 19 18 17 21 21 N 1.28786 * 108.72526 * 0.43219 * 20 19 18 22 22 H 0.96997 * 125.44735 * 179.72062 * 21 20 19 23 23 N 1.28884 * 109.09854 * 359.72584 * 21 20 19 24 24 H 0.97009 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 29 29 H 1.09002 * 109.47193 * 60.00246 * 11 10 9 30 30 H 1.08992 * 109.47333 * 299.99245 * 11 10 9 31 31 H 0.97003 * 120.00244 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 33 33 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 37 37 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4319 -6.1007 -0.0018 13 6 1.9826 -7.3714 -0.0019 14 8 0.7901 -7.5929 -0.0020 15 6 2.9618 -8.5169 -0.0020 16 6 2.1967 -9.8418 -0.0027 17 6 3.1910 -11.0048 -0.0021 18 6 2.4374 -12.3099 -0.0023 19 7 2.0450 -13.0001 1.0686 20 7 1.4309 -14.0523 0.6444 21 7 1.4367 -14.0434 -0.6434 22 1 1.0441 -14.7238 -1.2125 23 7 2.0476 -12.9858 -1.0551 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 2.8717 -3.6044 0.8894 28 1 2.8717 -3.6044 -0.8905 29 1 0.8536 -5.0445 -0.8914 30 1 0.8531 -5.0451 0.8886 31 1 3.3856 -5.9235 -0.0021 32 1 3.5884 -8.4592 0.8880 33 1 3.5885 -8.4590 -0.8919 34 1 1.5704 -9.8992 -0.8930 35 1 1.5698 -9.8998 0.8870 36 1 3.8183 -10.9470 -0.8917 37 1 3.8169 -10.9472 0.8882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443694755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:37 Heat of formation + Delta-G solvation = 24.739626 kcal Electronic energy + Delta-G solvation = -18646.679155 eV Core-core repulsion = 15459.800673 eV Total energy + Delta-G solvation = -3186.878481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.44754 -40.69491 -37.10241 -36.41333 -35.15833 -35.06376 -33.64297 -32.91699 -29.74101 -28.17743 -25.57981 -25.27797 -23.95007 -22.31932 -22.28098 -21.00905 -20.10464 -18.54730 -18.06160 -17.86639 -17.00167 -16.82978 -16.40815 -16.14372 -15.68602 -15.13756 -14.76151 -14.57110 -14.23684 -13.78372 -13.60354 -13.46157 -13.23081 -12.79222 -12.68042 -12.53892 -12.46756 -12.34368 -12.29321 -12.07937 -11.65441 -11.62240 -11.57192 -11.26957 -11.23036 -10.75350 -10.55010 -10.02989 -8.18929 -6.30588 0.14460 1.06504 1.42506 1.44034 1.53364 1.55048 1.74410 2.30594 2.44284 2.96181 3.14768 3.35110 3.81065 4.05744 4.14428 4.20527 4.23882 4.36386 4.56986 4.57438 4.69078 4.75354 4.77246 4.94529 4.96328 5.06690 5.18893 5.22424 5.36120 5.49328 5.57083 5.66192 5.71625 5.84951 6.22734 6.68493 6.87477 7.22623 7.37632 7.39395 8.93189 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.076786 B = 0.002163 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.564019 B =12941.638490 C =13116.285720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.716 5.716 13 C 0.499 3.501 14 O -0.601 6.601 15 C -0.125 4.125 16 C -0.094 4.094 17 C -0.018 4.018 18 C 0.170 3.830 19 N -0.306 5.306 20 N -0.068 5.068 21 N -0.209 5.209 22 H 0.491 0.509 23 N -0.308 5.308 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.418 0.582 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.123 0.877 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.306 -26.520 -2.489 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.368 5.368 13 C 0.288 3.712 14 O -0.482 6.482 15 C -0.164 4.164 16 C -0.133 4.133 17 C -0.058 4.058 18 C -0.113 4.113 19 N -0.178 5.178 20 N -0.063 5.063 21 N -0.059 5.059 22 H 0.349 0.651 23 N -0.160 5.160 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.256 0.744 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.058 -27.062 -2.195 28.954 hybrid contribution -0.255 1.050 -0.534 1.205 sum 9.804 -26.012 -2.729 27.932 Atomic orbital electron populations 1.70124 1.08004 1.27770 1.51761 1.26066 0.95775 1.03697 0.94837 0.85387 0.78687 0.78149 0.78451 1.19809 1.21159 1.18282 1.21694 0.93813 0.91944 1.50319 0.91345 1.18966 0.94536 0.93224 0.94902 1.21585 0.98335 0.91690 1.02240 1.21177 0.92193 0.86054 1.00217 1.46023 1.11154 1.05132 1.74526 1.21666 0.89986 0.85046 0.74519 1.90699 1.19909 1.85585 1.51995 1.21676 0.97229 0.89465 1.08054 1.21168 0.97459 0.92408 1.02294 1.20160 0.95786 0.82412 1.07449 1.26254 1.00771 1.00649 0.83618 1.75883 1.13057 1.01401 1.27500 1.78903 1.15708 1.16743 0.94941 1.47867 1.35321 1.17200 1.05541 0.65117 1.74709 1.14452 0.98922 1.27933 0.92858 0.99149 0.99174 0.91220 0.91173 0.93712 0.93767 0.74420 0.85096 0.84953 0.92839 0.93108 0.85918 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.12 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.80 5.27 30.60 0.16 -3.64 16 11 C 0.13 4.48 5.67 86.38 0.49 4.97 16 12 N -0.72 -18.04 5.56 -463.05 -2.57 -20.61 16 13 C 0.50 12.95 7.83 87.66 0.69 13.63 16 14 O -0.60 -22.38 15.98 -3.05 -0.05 -22.43 16 15 C -0.12 -1.63 5.70 29.85 0.17 -1.46 16 16 C -0.09 -1.56 4.49 30.59 0.14 -1.42 16 17 C -0.02 -0.20 5.84 29.85 0.17 -0.02 16 18 C 0.17 2.98 7.62 138.55 1.06 4.04 16 19 N -0.31 -6.56 12.50 -51.26 -0.64 -7.20 16 20 N -0.07 -1.26 13.48 37.02 0.50 -0.76 16 21 N -0.21 -2.62 7.91 37.00 0.29 -2.33 16 22 H 0.49 1.42 8.96 -347.67 -3.12 -1.70 16 23 N -0.31 -5.01 12.36 -51.20 -0.63 -5.64 16 24 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.42 7.21 8.47 -92.71 -0.79 6.42 16 32 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 35 H 0.05 1.11 8.10 -2.39 -0.02 1.10 16 36 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -81.13 325.01 0.12 -81.01 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.81 Total: 1.76 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 3.72 Total: -12.31 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -2.77 Total: -93.69 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -81.13 0.12 -81.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443694755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.747 kcal (2) G-P(sol) polarization free energy of solvation -81.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds