Wall clock time and date at job start Mon Mar 30 2020 00:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.50702 * 109.46805 * 239.99967 * 2 1 3 5 5 H 1.08004 * 119.99792 * 239.99949 * 4 2 1 6 6 C 1.37875 * 120.00025 * 60.00120 * 4 2 1 7 7 N 1.31515 * 120.00107 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47241 * 120.00108 * 8 6 4 11 11 H 1.48501 * 109.47173 * 240.00025 * 8 6 4 12 12 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 13 13 N 1.46493 * 109.47084 * 299.99612 * 12 2 1 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 12 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 12 17 17 N 1.46497 * 109.47115 * 180.02562 * 16 14 13 18 18 C 1.34344 * 126.76221 * 125.00011 * 17 16 14 19 19 N 1.30886 * 108.20946 * 180.02562 * 18 17 16 20 20 C 1.33652 * 109.77404 * 359.97438 * 19 18 17 21 21 N 1.39608 * 125.61158 * 179.97438 * 20 19 18 22 22 N 1.31202 * 108.77598 * 359.71565 * 20 19 18 23 23 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 24 24 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 25 25 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 28 28 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 29 29 H 0.97000 * 120.00440 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.46593 * 179.97438 * 12 2 1 31 31 H 1.09006 * 109.47216 * 60.00328 * 12 2 1 32 32 H 0.97000 * 120.00740 * 359.72857 * 13 12 2 33 33 H 1.08998 * 109.47224 * 299.99701 * 16 14 13 34 34 H 1.09002 * 109.47054 * 60.00213 * 16 14 13 35 35 H 1.07995 * 125.89653 * 0.03422 * 18 17 16 36 36 H 0.97004 * 119.99727 * 359.97438 * 21 20 19 37 37 H 0.97002 * 119.99977 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 3.1482 -2.2856 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5712 -1.4796 3.7807 16 6 1.3805 0.2231 4.8999 17 7 1.8687 -0.4675 6.0961 18 6 2.5696 0.0729 7.1068 19 7 2.8161 -0.8680 7.9826 20 6 2.2879 -2.0230 7.5662 21 7 2.3555 -3.2400 8.2469 22 7 1.6907 -1.8236 6.4151 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7086 1.1613 -3.4844 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 0.9973 0.7603 2.3565 33 1 1.7480 1.2493 4.8980 34 1 0.2905 0.2275 4.9019 35 1 2.8766 1.1054 7.1835 36 1 2.8168 -3.2944 9.0985 37 1 1.9412 -4.0312 7.8682 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451114166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:10 Heat of formation + Delta-G solvation = 61.046325 kcal Electronic energy + Delta-G solvation = -20107.441064 eV Core-core repulsion = 16922.136960 eV Total energy + Delta-G solvation = -3185.304105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91442 -39.30769 -36.48187 -35.00873 -33.38886 -32.80316 -31.03350 -30.49438 -27.74348 -25.78732 -25.55002 -24.67230 -22.26791 -21.36488 -20.24429 -18.88660 -17.44387 -17.27612 -16.62555 -15.94816 -15.88010 -15.37616 -14.98175 -14.75222 -14.48462 -14.13406 -13.41163 -13.32547 -12.93358 -12.44119 -12.25508 -11.74372 -11.43285 -11.25855 -11.15411 -10.91508 -10.69981 -10.44549 -10.24749 -9.90038 -9.85135 -9.69715 -9.60218 -9.30496 -8.83492 -8.53634 -8.38555 -8.20757 -6.06693 -4.16676 1.74927 2.20357 2.85396 3.19883 3.24619 3.33358 3.36650 3.40489 3.61908 4.36481 4.43651 4.56798 4.93965 4.95077 5.20460 5.22697 5.89763 6.14970 6.26354 6.40491 6.44030 6.70178 6.72949 6.75263 6.87074 6.92850 6.95805 7.29333 7.35157 7.39434 7.49929 7.65133 7.91216 7.95817 8.08993 8.33239 8.41526 8.56020 8.84212 9.49587 10.94768 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043435 B = 0.003576 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.484677 B = 7827.790223 C = 8152.007633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.134 3.866 13 N -0.714 5.714 14 C 0.490 3.510 15 O -0.521 6.521 16 C 0.113 3.887 17 N -0.363 5.363 18 C 0.275 3.725 19 N -0.575 5.575 20 C 0.461 3.539 21 N -0.829 5.829 22 N -0.336 5.336 23 H 0.006 0.994 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.398 0.602 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.219 0.781 36 H 0.411 0.589 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 2.315 16.173 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.012 3.988 13 N -0.367 5.367 14 C 0.272 3.728 15 O -0.397 6.397 16 C -0.014 4.014 17 N -0.155 5.155 18 C -0.023 4.023 19 N -0.309 5.309 20 C 0.089 3.911 21 N -0.386 5.386 22 N -0.173 5.173 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.235 0.765 36 H 0.241 0.759 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.647 1.313 15.876 15.943 hybrid contribution 0.118 -0.057 -0.895 0.905 sum -0.530 1.256 14.981 15.043 Atomic orbital electron populations 1.21833 0.97689 0.99248 1.00095 1.18367 0.92843 0.92763 0.90511 1.21832 0.98599 0.98308 1.00107 1.21024 1.31464 1.12123 0.89873 0.92390 1.24874 0.94822 0.94919 0.98881 1.69804 1.36689 1.22788 1.23181 0.86513 0.78670 0.79772 0.82937 1.19750 1.21024 1.21037 1.21738 0.98119 0.95868 0.83093 1.46245 1.52960 1.31770 1.05679 1.20360 0.81992 0.85708 0.84710 1.90773 1.37326 1.25272 1.86287 1.21602 1.01944 0.95919 0.81949 1.49490 1.42332 1.06692 1.16943 1.25786 0.92368 0.99980 0.84144 1.70166 1.30055 0.98845 1.31832 1.20488 0.93599 0.87960 0.89065 1.40874 1.66552 1.05520 1.25656 1.78393 1.30521 0.92863 1.15554 0.97484 0.89559 0.95413 0.95430 0.89550 0.97492 0.93027 0.92706 0.92625 0.76651 0.85449 0.86718 0.76496 0.75901 0.75776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.13 9.35 55.43 0.52 -22.62 16 8 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 C 0.13 2.75 4.50 -4.04 -0.02 2.73 16 13 N -0.71 -11.56 4.96 -60.29 -0.30 -11.86 16 14 C 0.49 7.88 7.87 -10.98 -0.09 7.80 16 15 O -0.52 -11.04 15.75 5.56 0.09 -10.95 16 16 C 0.11 1.20 7.03 -5.20 -0.04 1.16 16 17 N -0.36 -4.86 3.40 -63.83 -0.22 -5.08 16 18 C 0.27 3.11 12.61 -90.69 -1.14 1.96 16 19 N -0.57 -8.01 11.21 -14.98 -0.17 -8.18 16 20 C 0.46 6.83 9.44 -321.17 -3.03 3.80 16 21 N -0.83 -8.99 9.13 30.00 0.27 -8.72 16 22 N -0.34 -5.57 11.85 29.99 0.36 -5.21 16 23 H 0.01 0.12 6.87 -51.93 -0.36 -0.24 16 24 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.40 5.47 6.16 -40.82 -0.25 5.21 16 33 H 0.13 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.22 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.41 3.45 8.96 -40.82 -0.37 3.09 16 37 H 0.41 3.86 8.96 -40.82 -0.37 3.49 16 LS Contribution 310.62 15.07 4.68 4.68 Total: -1.00 -34.12 310.62 -8.77 -42.89 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.82 Total: 7.67 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -4.16 Total: 1.89 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.46 Total: -61.67 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.12 -8.77 -42.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451114166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.940 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds