Wall clock time and date at job start Mon Mar 30 2020 00:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.50702 * 109.46805 * 239.99967 * 2 1 3 5 5 H 1.08004 * 119.99792 * 239.99949 * 4 2 1 6 6 C 1.37875 * 120.00025 * 60.00120 * 4 2 1 7 7 N 1.31515 * 120.00107 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47241 * 120.00108 * 8 6 4 11 11 H 1.48501 * 109.47173 * 240.00025 * 8 6 4 12 12 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 13 13 N 1.46493 * 109.47084 * 299.99612 * 12 2 1 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 12 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 12 17 17 N 1.46497 * 109.47115 * 180.02562 * 16 14 13 18 18 C 1.34344 * 126.76221 * 125.00011 * 17 16 14 19 19 N 1.30886 * 108.20946 * 180.02562 * 18 17 16 20 20 C 1.33652 * 109.77404 * 359.97438 * 19 18 17 21 21 N 1.39608 * 125.61158 * 179.97438 * 20 19 18 22 22 N 1.31202 * 108.77598 * 359.71565 * 20 19 18 23 23 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 24 24 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 25 25 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 28 28 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 29 29 H 0.97000 * 120.00440 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.46593 * 179.97438 * 12 2 1 31 31 H 1.09006 * 109.47216 * 60.00328 * 12 2 1 32 32 H 0.97000 * 120.00740 * 359.72857 * 13 12 2 33 33 H 1.08998 * 109.47224 * 299.99701 * 16 14 13 34 34 H 1.09002 * 109.47054 * 60.00213 * 16 14 13 35 35 H 1.07995 * 125.89653 * 0.03422 * 18 17 16 36 36 H 0.97004 * 119.99727 * 359.97438 * 21 20 19 37 37 H 0.97002 * 119.99977 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 3.1482 -2.2856 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5712 -1.4796 3.7807 16 6 1.3805 0.2231 4.8999 17 7 1.8687 -0.4675 6.0961 18 6 2.5696 0.0729 7.1068 19 7 2.8161 -0.8680 7.9826 20 6 2.2879 -2.0230 7.5662 21 7 2.3555 -3.2400 8.2469 22 7 1.6907 -1.8236 6.4151 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7086 1.1613 -3.4844 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 0.9973 0.7603 2.3565 33 1 1.7480 1.2493 4.8980 34 1 0.2905 0.2275 4.9019 35 1 2.8766 1.1054 7.1835 36 1 2.8168 -3.2944 9.0985 37 1 1.9412 -4.0312 7.8682 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451114166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:09 Heat of formation + Delta-G solvation = 38.094841 kcal Electronic energy + Delta-G solvation = -20108.436315 eV Core-core repulsion = 16922.136960 eV Total energy + Delta-G solvation = -3186.299356 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.84789 -40.66558 -38.14810 -35.95606 -35.01928 -33.77638 -32.73187 -31.53407 -28.85476 -27.53384 -27.36885 -26.26139 -23.23890 -22.35209 -21.51225 -20.61099 -18.60200 -18.36891 -17.70502 -17.49301 -16.97939 -16.62497 -16.52362 -16.15658 -15.74829 -15.04576 -14.87371 -14.78110 -14.56476 -13.97544 -13.64567 -13.16795 -13.09816 -12.72988 -12.65521 -12.58724 -12.23803 -12.14945 -12.05026 -11.47152 -11.28919 -10.97701 -10.87274 -10.70851 -10.59938 -10.40051 -9.95487 -9.14616 -8.03476 -6.18651 0.84797 1.36386 1.39702 1.44524 1.53389 1.64359 2.19849 2.29981 2.47541 2.69378 3.20234 3.62735 3.77187 4.00971 4.24790 4.40631 4.45501 4.51736 4.73567 5.00386 5.02322 5.08436 5.12327 5.21807 5.37138 5.46360 5.59364 5.67568 5.69935 5.95341 6.18630 6.23502 6.44436 6.47867 6.57125 6.67376 6.85792 7.32503 7.49203 7.52317 8.95193 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043435 B = 0.003576 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.484677 B = 7827.790223 C = 8152.007633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.039 0.961 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.152 3.848 13 N -0.704 5.704 14 C 0.487 3.513 15 O -0.578 6.578 16 C 0.120 3.880 17 N -0.375 5.375 18 C 0.288 3.712 19 N -0.602 5.602 20 C 0.447 3.553 21 N -0.820 5.820 22 N -0.392 5.392 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.013 0.987 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.260 0.740 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.414 0.586 33 H 0.187 0.813 34 H 0.142 0.858 35 H 0.274 0.726 36 H 0.421 0.579 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 4.311 17.507 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.058 0.942 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.028 3.972 13 N -0.357 5.357 14 C 0.273 3.727 15 O -0.457 6.457 16 C -0.005 4.005 17 N -0.166 5.166 18 C -0.008 4.008 19 N -0.337 5.337 20 C 0.075 3.925 21 N -0.378 5.378 22 N -0.230 5.230 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.252 0.748 33 H 0.204 0.796 34 H 0.159 0.841 35 H 0.289 0.711 36 H 0.253 0.747 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.080 3.334 17.227 17.580 hybrid contribution 0.264 -0.677 -1.282 1.473 sum -0.816 2.658 15.945 16.186 Atomic orbital electron populations 1.21678 0.96976 0.98525 1.00729 1.18357 0.93316 0.93255 0.89961 1.21665 0.97893 0.97462 1.00814 1.21321 1.31655 1.12088 0.91866 0.94231 1.25396 0.95164 0.95602 1.00793 1.69895 1.36907 1.23180 1.23545 0.85765 0.78158 0.78744 0.80479 1.20345 1.20711 1.20571 1.21192 0.96777 0.94833 0.84445 1.45990 1.53056 1.31954 1.04747 1.21354 0.80534 0.84986 0.85840 1.90759 1.39859 1.27945 1.87127 1.21911 1.03468 0.97155 0.77995 1.49603 1.43087 1.05914 1.18001 1.26889 0.89875 1.01495 0.82531 1.70196 1.31108 0.99130 1.33236 1.20916 0.93421 0.89111 0.89055 1.40930 1.66226 1.04852 1.25819 1.78267 1.32511 0.95439 1.16763 0.93714 0.91922 0.96776 0.96404 0.92009 0.93491 0.92996 0.94667 0.95186 0.74766 0.79582 0.84086 0.71087 0.74729 0.75237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -4.99 8.08 71.98 0.58 -4.40 16 4 C -0.53 -27.83 8.01 25.60 0.21 -27.62 16 5 H 0.04 2.16 7.74 -2.91 -0.02 2.13 16 6 C 0.03 1.58 5.15 84.65 0.44 2.02 16 7 N -0.90 -46.76 9.35 21.45 0.20 -46.56 16 8 Si 0.94 42.39 29.54 68.60 2.03 44.41 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.15 6.23 4.50 86.38 0.39 6.62 16 13 N -0.70 -21.24 4.96 -463.05 -2.30 -23.54 16 14 C 0.49 14.69 7.87 87.65 0.69 15.38 16 15 O -0.58 -24.47 15.75 -3.04 -0.05 -24.52 16 16 C 0.12 2.05 7.03 85.63 0.60 2.65 16 17 N -0.37 -8.98 3.40 -355.85 -1.21 -10.19 16 18 C 0.29 5.51 12.61 180.37 2.27 7.78 16 19 N -0.60 -15.65 11.21 -201.31 -2.26 -17.91 16 20 C 0.45 12.94 9.44 260.91 2.46 15.41 16 21 N -0.82 -17.55 9.13 -59.01 -0.54 -18.09 16 22 N -0.39 -12.68 11.85 -59.03 -0.70 -13.38 16 23 H 0.04 1.50 6.87 -2.39 -0.02 1.49 16 24 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 28 H 0.05 1.52 6.86 -2.39 -0.02 1.50 16 29 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 30 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.41 9.71 6.16 -92.71 -0.57 9.14 16 33 H 0.19 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.27 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.42 6.87 8.96 -92.71 -0.83 6.04 16 37 H 0.42 7.85 8.96 -92.71 -0.83 7.02 16 Total: -1.00 -78.05 310.62 2.27 -75.78 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -1.11 Total: 18.44 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 8.19 Total: 15.55 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -6.80 Total: -129.67 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -78.05 2.27 -75.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451114166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.877 kcal (2) G-P(sol) polarization free energy of solvation -78.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds