Wall clock time and date at job start Mon Mar 30 2020 00:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40511 * 127.03225 * 2 1 4 4 H 0.96998 * 126.60063 * 359.97438 * 3 2 1 5 5 C 1.35093 * 106.79604 * 179.83767 * 3 2 1 6 6 N 1.30725 * 109.39830 * 0.42967 * 5 3 2 7 7 C 1.34315 * 110.10609 * 359.72718 * 6 5 3 8 8 N 1.32765 * 126.11659 * 179.97438 * 7 6 5 9 9 C 1.33916 * 119.99928 * 0.02562 * 8 7 6 10 10 O 1.21823 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99646 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99887 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47104 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47039 * 299.99688 * 13 12 11 15 15 C 1.52998 * 109.47423 * 59.99745 * 13 12 11 16 16 C 1.50701 * 109.47023 * 180.02562 * 13 12 11 17 17 H 1.07995 * 120.00201 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99932 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99989 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99872 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47474 * 89.99599 * 20 18 16 22 22 H 1.48506 * 109.47041 * 209.99372 * 20 18 16 23 23 H 1.48498 * 109.47239 * 329.99460 * 20 18 16 24 24 H 1.09002 * 109.47391 * 269.68778 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.68835 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.68962 * 1 2 3 27 27 H 1.07998 * 125.29521 * 180.13948 * 5 3 2 28 28 H 0.96999 * 120.00010 * 0.02562 * 11 9 8 29 29 H 1.08998 * 109.47175 * 300.00193 * 12 11 9 30 30 H 1.08998 * 109.47004 * 59.99965 * 12 11 9 31 31 H 1.08998 * 109.46956 * 60.00353 * 14 13 12 32 32 H 1.08999 * 109.47219 * 180.02562 * 14 13 12 33 33 H 1.08998 * 109.47156 * 300.00446 * 14 13 12 34 34 H 1.09007 * 109.47022 * 60.00185 * 15 13 12 35 35 H 1.08998 * 109.47544 * 179.97438 * 15 13 12 36 36 H 1.08998 * 109.47297 * 300.00090 * 15 13 12 37 37 H 0.96994 * 120.00068 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3112 1.1217 0.0000 4 1 2.0379 2.0524 -0.0003 5 6 3.5788 0.6544 0.0037 6 7 3.5597 -0.6527 -0.0034 7 6 2.2918 -1.0959 -0.0059 8 7 1.9070 -2.3666 -0.0133 9 6 2.8230 -3.3435 -0.0185 10 8 4.0092 -3.0663 -0.0160 11 7 2.4323 -4.6334 -0.0265 12 6 3.4343 -5.7022 -0.0317 13 6 2.7307 -7.0607 -0.0411 14 6 1.8539 -7.1897 1.2062 15 6 1.8575 -7.1743 -1.2922 16 6 3.7614 -8.1602 -0.0457 17 1 4.8130 -7.9145 -0.0427 18 6 3.3618 -9.4797 -0.0549 19 7 2.0811 -9.7789 -0.0590 20 14 4.6393 -10.8425 -0.0614 21 1 4.9756 -11.2126 1.3370 22 1 4.0945 -12.0284 -0.7699 23 1 5.8636 -10.3699 -0.7563 24 1 -0.3634 -0.0056 1.0276 25 1 -0.3633 -0.8872 -0.5187 26 1 -0.3633 0.8928 -0.5090 27 1 4.4692 1.2656 0.0068 28 1 1.4877 -4.8540 -0.0289 29 1 4.0586 -5.6106 -0.9204 30 1 4.0566 -5.6210 0.8595 31 1 1.1085 -6.3945 1.2100 32 1 1.3530 -8.1577 1.1998 33 1 2.4760 -7.1088 2.0976 34 1 2.4821 -7.0825 -2.1808 35 1 1.3566 -8.1423 -1.2992 36 1 1.1120 -6.3791 -1.2884 37 1 1.8000 -10.7072 -0.0651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465970340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:18 Heat of formation + Delta-G solvation = 104.318592 kcal Electronic energy + Delta-G solvation = -20251.775468 eV Core-core repulsion = 17068.347789 eV Total energy + Delta-G solvation = -3183.427678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19970 -38.74672 -36.21169 -34.35565 -33.91710 -32.73062 -31.03312 -30.27864 -27.49638 -25.49104 -25.38289 -24.70044 -23.02381 -22.03377 -19.64084 -18.72089 -18.45373 -16.80028 -16.39561 -16.01888 -15.63531 -15.20524 -14.67442 -14.47219 -14.29993 -13.58686 -13.26455 -13.03862 -12.73155 -12.59031 -11.92273 -11.29842 -11.02992 -10.99325 -10.64943 -10.58463 -10.54315 -10.38614 -10.24168 -10.13839 -9.99693 -9.38735 -9.08836 -8.61238 -8.47781 -8.23989 -8.03503 -7.57924 -5.85396 -3.94521 0.95270 0.98372 2.84428 3.35084 3.39399 3.45442 3.50627 4.17327 4.19240 4.48427 4.54755 4.69158 4.83089 4.92494 5.20984 5.40742 5.56327 5.71131 6.39452 6.60139 6.63804 6.77724 6.98024 7.10077 7.11346 7.25170 7.27748 7.48467 7.61143 7.72331 7.78133 7.86882 8.13811 8.22391 8.33814 8.59258 8.80177 9.05879 9.69870 9.73058 11.15990 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045580 B = 0.003757 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.154139 B = 7451.578490 C = 7869.362987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.425 5.425 3 N -0.507 5.507 4 H 0.447 0.553 5 C 0.357 3.643 6 N -0.519 5.519 7 C 0.604 3.396 8 N -0.645 5.645 9 C 0.667 3.333 10 O -0.593 6.593 11 N -0.709 5.709 12 C 0.150 3.850 13 C 0.055 3.945 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.501 4.501 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.892 3.108 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.396 0.604 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.008 0.992 32 H 0.083 0.917 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.083 0.917 36 H 0.008 0.992 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 25.155 0.022 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.234 5.234 3 N -0.236 5.236 4 H 0.295 0.705 5 C 0.060 3.940 6 N -0.252 5.252 7 C 0.242 3.758 8 N -0.407 5.407 9 C 0.364 3.636 10 O -0.470 6.470 11 N -0.362 5.362 12 C 0.026 3.974 13 C 0.054 3.946 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.540 4.540 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.720 3.280 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.089 0.911 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.252 0.748 28 H 0.231 0.769 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.027 0.973 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.752 24.016 0.010 24.482 hybrid contribution 0.067 0.375 0.025 0.382 sum -4.685 24.391 0.036 24.837 Atomic orbital electron populations 1.21925 0.71766 1.04795 1.03474 1.47570 1.03816 0.97387 1.74616 1.45256 1.03136 1.03032 1.72156 0.70534 1.26230 0.86788 0.92984 0.88010 1.72235 1.19332 1.07113 1.26495 1.20377 0.81179 0.87984 0.86301 1.68628 1.37324 0.94181 1.40561 1.16737 0.84878 0.83409 0.78554 1.90953 1.18508 1.83547 1.53998 1.45189 1.10837 1.03593 1.76586 1.21512 0.89909 0.86023 0.99923 1.18357 0.93832 0.89531 0.92839 1.21797 0.98100 1.01246 0.97499 1.21794 0.98100 1.01231 0.97509 1.21034 0.92509 0.90244 1.50184 0.92481 1.24882 0.95209 0.98478 0.95055 1.69824 1.13798 1.17940 1.51049 0.86589 0.81840 0.81540 0.77982 1.20815 1.21389 1.19936 0.91081 0.87442 0.90500 0.74751 0.76908 0.93346 0.93346 0.97272 0.89826 0.95643 0.95640 0.89822 0.97268 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.75 11.51 59.85 0.69 1.43 16 2 N -0.42 -4.18 4.13 -68.90 -0.28 -4.47 16 3 N -0.51 -2.66 7.36 29.64 0.22 -2.44 16 4 H 0.45 0.10 8.96 -182.29 -1.63 -1.53 16 5 C 0.36 2.63 13.06 -90.14 -1.18 1.45 16 6 N -0.52 -8.07 9.19 -14.93 -0.14 -8.21 16 7 C 0.60 9.80 8.40 -321.68 -2.70 7.09 16 8 N -0.64 -12.76 10.50 -17.56 -0.18 -12.95 16 9 C 0.67 15.70 8.47 -87.69 -0.74 14.95 16 10 O -0.59 -15.61 14.88 5.08 0.08 -15.54 16 11 N -0.71 -16.32 4.96 -65.41 -0.32 -16.65 16 12 C 0.15 3.76 4.50 -4.04 -0.02 3.74 16 13 C 0.06 1.43 0.50 -155.66 -0.08 1.35 16 14 C -0.13 -3.24 8.08 37.16 0.30 -2.94 16 15 C -0.13 -3.23 8.08 37.16 0.30 -2.93 16 16 C -0.50 -14.18 8.01 -34.44 -0.28 -14.46 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.80 5.15 -17.82 -0.09 1.71 16 19 N -0.89 -25.05 9.35 55.43 0.52 -24.53 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.24 0.31 8.06 -52.49 -0.42 -0.11 16 28 H 0.40 8.60 6.26 -40.82 -0.26 8.35 16 29 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 32 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 33 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 36 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -40.47 309.18 -10.43 -50.90 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.16 Total: 1.00 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: -3.80 Total: 11.40 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -0.19 Total: -69.25 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.08 Total: -15.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -40.47 -10.43 -50.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465970340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.220 kcal (2) G-P(sol) polarization free energy of solvation -40.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds