Wall clock time and date at job start Mon Mar 30 2020 00:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40511 * 127.03225 * 2 1 4 4 H 0.96998 * 126.60063 * 359.97438 * 3 2 1 5 5 C 1.35093 * 106.79604 * 179.83767 * 3 2 1 6 6 N 1.30725 * 109.39830 * 0.42967 * 5 3 2 7 7 C 1.34315 * 110.10609 * 359.72718 * 6 5 3 8 8 N 1.32765 * 126.11659 * 179.97438 * 7 6 5 9 9 C 1.33916 * 119.99928 * 0.02562 * 8 7 6 10 10 O 1.21823 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99646 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99887 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47104 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47039 * 299.99688 * 13 12 11 15 15 C 1.52998 * 109.47423 * 59.99745 * 13 12 11 16 16 C 1.50701 * 109.47023 * 180.02562 * 13 12 11 17 17 H 1.07995 * 120.00201 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99932 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99989 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99872 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47474 * 89.99599 * 20 18 16 22 22 H 1.48506 * 109.47041 * 209.99372 * 20 18 16 23 23 H 1.48498 * 109.47239 * 329.99460 * 20 18 16 24 24 H 1.09002 * 109.47391 * 269.68778 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.68835 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.68962 * 1 2 3 27 27 H 1.07998 * 125.29521 * 180.13948 * 5 3 2 28 28 H 0.96999 * 120.00010 * 0.02562 * 11 9 8 29 29 H 1.08998 * 109.47175 * 300.00193 * 12 11 9 30 30 H 1.08998 * 109.47004 * 59.99965 * 12 11 9 31 31 H 1.08998 * 109.46956 * 60.00353 * 14 13 12 32 32 H 1.08999 * 109.47219 * 180.02562 * 14 13 12 33 33 H 1.08998 * 109.47156 * 300.00446 * 14 13 12 34 34 H 1.09007 * 109.47022 * 60.00185 * 15 13 12 35 35 H 1.08998 * 109.47544 * 179.97438 * 15 13 12 36 36 H 1.08998 * 109.47297 * 300.00090 * 15 13 12 37 37 H 0.96994 * 120.00068 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3112 1.1217 0.0000 4 1 2.0379 2.0524 -0.0003 5 6 3.5788 0.6544 0.0037 6 7 3.5597 -0.6527 -0.0034 7 6 2.2918 -1.0959 -0.0059 8 7 1.9070 -2.3666 -0.0133 9 6 2.8230 -3.3435 -0.0185 10 8 4.0092 -3.0663 -0.0160 11 7 2.4323 -4.6334 -0.0265 12 6 3.4343 -5.7022 -0.0317 13 6 2.7307 -7.0607 -0.0411 14 6 1.8539 -7.1897 1.2062 15 6 1.8575 -7.1743 -1.2922 16 6 3.7614 -8.1602 -0.0457 17 1 4.8130 -7.9145 -0.0427 18 6 3.3618 -9.4797 -0.0549 19 7 2.0811 -9.7789 -0.0590 20 14 4.6393 -10.8425 -0.0614 21 1 4.9756 -11.2126 1.3370 22 1 4.0945 -12.0284 -0.7699 23 1 5.8636 -10.3699 -0.7563 24 1 -0.3634 -0.0056 1.0276 25 1 -0.3633 -0.8872 -0.5187 26 1 -0.3633 0.8928 -0.5090 27 1 4.4692 1.2656 0.0068 28 1 1.4877 -4.8540 -0.0289 29 1 4.0586 -5.6106 -0.9204 30 1 4.0566 -5.6210 0.8595 31 1 1.1085 -6.3945 1.2100 32 1 1.3530 -8.1577 1.1998 33 1 2.4760 -7.1088 2.0976 34 1 2.4821 -7.0825 -2.1808 35 1 1.3566 -8.1423 -1.2992 36 1 1.1120 -6.3791 -1.2884 37 1 1.8000 -10.7072 -0.0651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465970340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:18 Heat of formation + Delta-G solvation = 74.726938 kcal Electronic energy + Delta-G solvation = -20253.058658 eV Core-core repulsion = 17068.347789 eV Total energy + Delta-G solvation = -3184.710869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.09641 -40.40745 -38.13111 -35.24264 -35.12512 -34.59583 -32.68992 -31.68819 -28.26370 -27.54669 -27.41287 -26.62308 -23.79216 -23.34163 -20.92609 -20.47420 -19.70228 -18.19749 -17.66708 -17.28869 -17.13235 -16.57381 -16.19434 -15.96857 -15.76460 -15.08419 -14.73793 -14.52471 -14.14130 -13.95872 -13.54052 -13.18589 -13.08612 -12.67913 -12.55880 -12.27044 -12.11547 -12.05293 -11.75632 -11.45454 -11.44804 -11.19821 -11.14917 -10.68698 -10.36762 -10.04783 -9.76372 -8.86845 -7.98595 -6.14900 0.05950 0.26040 1.45413 1.46273 1.56690 1.77463 2.36222 2.51897 2.93385 3.15761 3.23887 3.57669 3.98814 4.12831 4.42743 4.44489 4.56541 4.57380 4.73124 4.75208 4.96826 5.01516 5.09519 5.17705 5.22599 5.42258 5.52066 5.68555 5.69052 5.85223 6.15026 6.23553 6.36155 6.46516 6.58019 6.88516 6.97566 7.18145 7.52058 8.12585 9.01094 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045580 B = 0.003757 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.154139 B = 7451.578490 C = 7869.362987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.413 5.413 3 N -0.465 5.465 4 H 0.476 0.524 5 C 0.384 3.616 6 N -0.600 5.600 7 C 0.590 3.410 8 N -0.681 5.681 9 C 0.663 3.337 10 O -0.638 6.638 11 N -0.709 5.709 12 C 0.170 3.830 13 C 0.052 3.948 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.529 4.529 17 H 0.044 0.956 18 C 0.026 3.974 19 N -0.901 5.901 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.276 1.276 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.297 0.703 28 H 0.401 0.599 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 28.223 0.034 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.218 5.218 3 N -0.194 5.194 4 H 0.330 0.670 5 C 0.089 3.911 6 N -0.336 5.336 7 C 0.227 3.773 8 N -0.449 5.449 9 C 0.360 3.640 10 O -0.519 6.519 11 N -0.363 5.363 12 C 0.045 3.955 13 C 0.051 3.949 14 C -0.173 4.173 15 C -0.173 4.173 16 C -0.568 4.568 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.539 5.539 20 Si 0.778 3.222 21 H -0.203 1.203 22 H -0.205 1.205 23 H -0.201 1.201 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.312 0.688 28 H 0.237 0.763 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.567 27.304 0.025 27.866 hybrid contribution 0.239 -0.172 0.026 0.295 sum -5.328 27.133 0.051 27.651 Atomic orbital electron populations 1.22293 0.69371 1.06349 1.04831 1.47935 1.05117 0.97452 1.71246 1.45478 1.02180 1.03225 1.68499 0.66971 1.27367 0.88646 0.91157 0.83938 1.72116 1.19703 1.11222 1.30546 1.20578 0.82795 0.88408 0.85550 1.68537 1.35690 0.95142 1.45510 1.17102 0.84927 0.84025 0.77904 1.90888 1.20310 1.84029 1.56633 1.44950 1.10347 1.03462 1.77568 1.21070 0.89940 0.86582 0.97908 1.18363 0.93730 0.89316 0.93490 1.21624 0.98059 1.00957 0.96710 1.21621 0.98060 1.00942 0.96720 1.21258 0.92459 0.91625 1.51447 0.93807 1.25513 0.97070 1.00198 0.94528 1.69923 1.14873 1.18482 1.50662 0.85664 0.79524 0.78974 0.78066 1.20318 1.20495 1.20083 0.89745 0.89057 0.85931 0.68840 0.76318 0.95398 0.95384 0.95139 0.91529 0.96507 0.96492 0.91526 0.95128 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.02 11.51 127.77 1.47 2.49 16 2 N -0.41 -6.96 4.13 -371.91 -1.54 -8.49 16 3 N -0.46 -2.70 7.36 -60.15 -0.44 -3.14 16 4 H 0.48 -2.70 8.96 -213.06 -1.91 -4.61 16 5 C 0.38 4.19 13.06 180.18 2.35 6.54 16 6 N -0.60 -18.13 9.19 -201.14 -1.85 -19.98 16 7 C 0.59 18.83 8.40 261.09 2.19 21.02 16 8 N -0.68 -27.66 10.50 -328.10 -3.45 -31.10 16 9 C 0.66 32.57 8.47 179.32 1.52 34.09 16 10 O -0.64 -35.28 14.88 -4.74 -0.07 -35.35 16 11 N -0.71 -33.98 4.96 -479.01 -2.38 -36.36 16 12 C 0.17 8.93 4.50 86.38 0.39 9.32 16 13 C 0.05 2.76 0.50 -52.93 -0.03 2.74 16 14 C -0.12 -5.93 8.08 71.98 0.58 -5.35 16 15 C -0.12 -5.93 8.08 71.98 0.58 -5.34 16 16 C -0.53 -30.83 8.01 25.60 0.21 -30.62 16 17 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 18 C 0.03 1.49 5.15 84.66 0.44 1.92 16 19 N -0.90 -51.22 9.35 21.45 0.20 -51.02 16 20 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.12 0.03 8.14 -2.38 -0.02 0.01 16 27 H 0.30 -0.89 8.06 -2.91 -0.02 -0.91 16 28 H 0.40 17.86 6.26 -92.71 -0.58 17.28 16 29 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 1.38 6.86 -2.39 -0.02 1.37 16 32 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 36 H 0.03 1.39 6.86 -2.39 -0.02 1.37 16 37 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -94.69 309.18 0.82 -93.87 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -1.38 Total: 7.50 kcal Atomic # 6 Polarization: 27.10 SS G_CDS: 9.70 Total: 36.81 kcal Atomic # 7 Polarization: -140.64 SS G_CDS: -9.45 Total: -150.09 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.07 Total: -35.35 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -94.69 0.82 -93.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465970340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.593 kcal (2) G-P(sol) polarization free energy of solvation -94.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds