Wall clock time and date at job start Mon Mar 30 2020 00:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46880 * 2 1 4 4 C 1.50697 * 109.47126 * 239.99882 * 2 1 3 5 5 H 1.07994 * 120.00458 * 354.92478 * 4 2 1 6 6 C 1.37888 * 119.99782 * 174.92648 * 4 2 1 7 7 N 1.31514 * 119.99436 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00069 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47299 * 84.86660 * 8 6 4 10 10 H 1.48503 * 109.47202 * 204.86509 * 8 6 4 11 11 H 1.48504 * 109.47326 * 324.86672 * 8 6 4 12 12 N 1.46907 * 109.47459 * 119.99919 * 2 1 3 13 13 C 1.46895 * 110.99682 * 58.95080 * 12 2 1 14 14 C 1.46906 * 110.99690 * 295.00233 * 12 2 1 15 15 C 1.50700 * 109.46861 * 189.99743 * 14 12 2 16 16 C 1.35351 * 126.75046 * 95.00331 * 15 14 12 17 17 N 1.35310 * 106.17354 * 180.02562 * 16 15 14 18 18 C 1.46501 * 125.86679 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47209 * 124.98332 * 18 17 16 20 20 N 1.34779 * 120.00251 * 180.02562 * 19 18 17 21 21 O 1.21280 * 119.99678 * 359.97438 * 19 18 17 22 22 N 1.28706 * 108.26509 * 359.97438 * 17 16 15 23 23 N 1.28631 * 110.17914 * 359.97438 * 22 17 16 24 24 H 1.08994 * 109.47340 * 55.19300 * 1 2 3 25 25 H 1.09001 * 109.46633 * 175.18681 * 1 2 3 26 26 H 1.09001 * 109.47227 * 295.18580 * 1 2 3 27 27 H 0.97005 * 119.99482 * 180.02562 * 7 6 4 28 28 H 1.08991 * 109.47722 * 296.04877 * 13 12 2 29 29 H 1.09003 * 109.46939 * 56.05710 * 13 12 2 30 30 H 1.09002 * 109.46803 * 176.04848 * 13 12 2 31 31 H 1.09004 * 109.47007 * 69.99458 * 14 12 2 32 32 H 1.08996 * 109.47011 * 309.99923 * 14 12 2 33 33 H 1.08006 * 126.91257 * 359.97438 * 16 15 14 34 34 H 1.09000 * 109.47594 * 244.98194 * 18 17 16 35 35 H 1.09009 * 109.47244 * 4.98334 * 18 17 16 36 36 H 0.97001 * 119.99589 * 359.97438 * 20 19 18 37 37 H 0.96997 * 119.99542 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.3341 -1.1919 -1.8989 6 6 3.3836 -0.7457 -1.5027 7 7 3.8219 -1.3661 -2.5763 8 14 4.5914 0.0877 -0.3469 9 1 4.9328 -0.8375 0.7634 10 1 5.8255 0.4428 -1.0925 11 1 3.9760 1.3203 0.2075 12 7 2.0198 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6488 0.0392 2.4181 15 6 2.3680 -0.5571 3.6006 16 6 3.5371 -0.1336 4.1351 17 7 3.7988 -0.9614 5.1730 18 6 4.9657 -0.8887 6.0558 19 6 4.5069 -0.7978 7.4884 20 7 5.4134 -0.7201 8.4827 21 8 3.3219 -0.7935 7.7464 22 7 2.8458 -1.8228 5.2520 23 7 1.9761 -1.6084 4.3289 24 1 -0.3634 0.5866 -0.8437 25 1 -0.3632 -1.0241 -0.0862 26 1 -0.3634 0.4373 0.9300 27 1 4.7726 -1.3913 -2.7677 28 1 0.4421 -2.0731 1.3348 29 1 1.8169 -2.5950 0.3319 30 1 1.9618 -2.5868 2.1059 31 1 0.5722 -0.0345 2.5726 32 1 1.9297 1.0870 2.3125 33 1 4.1403 0.6974 3.8001 34 1 5.5759 -1.7825 5.9258 35 1 5.5556 -0.0066 5.8065 36 1 6.3612 -0.7231 8.2762 37 1 5.1180 -0.6619 9.4048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474340209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:35 Heat of formation + Delta-G solvation = 80.452483 kcal Electronic energy + Delta-G solvation = -20617.865289 eV Core-core repulsion = 17433.402699 eV Total energy + Delta-G solvation = -3184.462591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.04144 -39.80954 -37.35352 -34.56619 -34.16915 -32.55508 -31.33057 -29.42239 -28.64889 -26.69814 -25.43132 -23.58439 -22.69997 -21.29674 -20.48005 -19.04284 -18.15779 -17.65678 -16.74586 -16.53667 -16.07418 -15.51864 -14.81377 -14.71014 -14.36174 -14.01377 -13.75003 -13.38617 -13.10689 -12.74278 -12.43852 -12.06740 -11.38182 -11.31158 -11.00646 -10.93565 -10.73285 -10.61989 -10.41108 -10.25732 -10.22995 -9.88988 -9.82239 -9.59498 -9.16410 -8.76818 -8.49887 -7.17492 -5.98526 -4.04009 1.74109 2.05415 2.17329 2.87036 3.00047 3.49561 3.55131 3.65214 4.11681 4.27602 4.51262 4.62779 4.65622 4.99560 5.24186 5.36193 5.57774 5.71579 6.03115 6.19366 6.21694 6.28718 6.40136 6.45347 6.49285 6.54459 6.57363 6.66737 6.78150 6.93924 7.16035 7.31002 7.69296 7.70441 8.08556 8.30206 8.63861 8.79745 9.03244 9.66410 11.11740 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027719 B = 0.005196 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.876786 B = 5387.279726 C = 5998.301325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.044 0.956 4 C -0.508 4.508 5 H 0.072 0.928 6 C 0.081 3.919 7 N -0.901 5.901 8 Si 0.918 3.082 9 H -0.273 1.273 10 H -0.314 1.314 11 H -0.273 1.273 12 N -0.533 5.533 13 C 0.041 3.959 14 C 0.127 3.873 15 C 0.008 3.992 16 C -0.045 4.045 17 N -0.294 5.294 18 C 0.099 3.901 19 C 0.505 3.495 20 N -0.851 5.851 21 O -0.507 6.507 22 N -0.066 5.066 23 N -0.260 5.260 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.015 0.985 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.403 0.597 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.231 4.406 19.751 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.062 0.938 4 C -0.547 4.547 5 H 0.090 0.910 6 C -0.122 4.122 7 N -0.539 5.539 8 Si 0.749 3.251 9 H -0.199 1.199 10 H -0.243 1.243 11 H -0.198 1.198 12 N -0.258 5.258 13 C -0.107 4.107 14 C -0.003 4.003 15 C -0.128 4.128 16 C -0.194 4.194 17 N -0.088 5.088 18 C -0.027 4.027 19 C 0.287 3.713 20 N -0.418 5.418 21 O -0.380 6.380 22 N -0.046 5.046 23 N -0.128 5.128 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.205 0.795 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.232 0.768 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.510 3.122 20.354 21.596 hybrid contribution 0.978 1.314 0.432 1.694 sum 7.487 4.436 20.786 22.534 Atomic orbital electron populations 1.22293 0.99843 1.01012 0.99241 1.19903 0.89985 0.95320 0.88307 0.93769 1.20888 0.93073 1.35752 1.04943 0.91026 1.25024 0.98660 0.94106 0.94430 1.69963 1.14686 1.42899 1.26339 0.86153 0.78337 0.80240 0.80406 1.19909 1.24291 1.19795 1.62714 1.59563 1.02867 1.00688 1.22111 0.96394 0.90190 1.01996 1.20371 0.96332 0.96974 0.86609 1.22056 0.95226 0.96012 0.99551 1.23289 1.01255 1.01506 0.93371 1.46596 1.17999 1.22126 1.22078 1.21720 0.85998 1.07536 0.87447 1.20377 0.86776 0.76708 0.87446 1.43693 1.10008 1.78282 1.09785 1.90902 1.16314 1.46837 1.83899 1.78322 0.94718 1.13227 1.18299 1.75074 1.20118 1.15029 1.02591 0.93129 0.93123 0.95060 0.92856 0.96631 0.90220 0.93409 0.93366 0.90121 0.79548 0.85392 0.84747 0.76795 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.40 37.16 0.31 -3.05 16 2 C 0.17 3.94 1.70 -68.86 -0.12 3.83 16 3 H 0.04 1.04 6.80 -51.93 -0.35 0.69 16 4 C -0.51 -14.08 7.76 -34.44 -0.27 -14.35 16 5 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.24 16 7 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 8 Si 0.92 22.74 26.26 -169.99 -4.46 18.28 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 11 H -0.27 -6.37 6.52 56.52 0.37 -6.00 16 12 N -0.53 -11.73 2.78 -237.73 -0.66 -12.39 16 13 C 0.04 0.91 8.61 60.06 0.52 1.43 16 14 C 0.13 2.38 4.97 -4.97 -0.02 2.36 16 15 C 0.01 0.16 5.96 -82.78 -0.49 -0.34 16 16 C -0.04 -0.69 11.50 -17.05 -0.20 -0.88 16 17 N -0.29 -4.24 3.20 -62.44 -0.20 -4.44 16 18 C 0.10 0.79 6.94 -5.19 -0.04 0.75 16 19 C 0.51 4.67 8.11 -10.99 -0.09 4.58 16 20 N -0.85 -3.51 8.87 31.22 0.28 -3.23 16 21 O -0.51 -7.77 16.51 5.56 0.09 -7.68 16 22 N -0.07 -1.22 12.13 60.35 0.73 -0.49 16 23 N -0.26 -5.21 11.44 33.29 0.38 -4.83 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 1.05 6.75 -51.93 -0.35 0.70 16 26 H 0.03 0.56 6.53 -51.93 -0.34 0.22 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.32 6.62 -51.93 -0.34 -0.02 16 29 H 0.08 1.94 6.99 -51.93 -0.36 1.58 16 30 H 0.05 1.05 6.55 -51.93 -0.34 0.70 16 31 H 0.05 0.89 6.83 -51.93 -0.35 0.54 16 32 H 0.08 1.37 8.00 -51.93 -0.42 0.96 16 33 H 0.19 2.18 8.06 -52.48 -0.42 1.75 16 34 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.13 0.50 8.07 -51.92 -0.42 0.08 16 36 H 0.40 0.15 8.83 -40.82 -0.36 -0.21 16 37 H 0.41 1.50 8.93 -40.82 -0.36 1.14 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -38.47 306.83 -3.80 -42.26 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.86 Total: -1.91 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.49 Total: -3.43 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 1.30 Total: -52.14 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.46 Total: 18.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.47 -3.80 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474340209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.717 kcal (2) G-P(sol) polarization free energy of solvation -38.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds