Wall clock time and date at job start Mon Mar 30 2020 00:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46880 * 2 1 4 4 C 1.50697 * 109.47126 * 239.99882 * 2 1 3 5 5 H 1.07994 * 120.00458 * 354.92478 * 4 2 1 6 6 C 1.37888 * 119.99782 * 174.92648 * 4 2 1 7 7 N 1.31514 * 119.99436 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00069 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47299 * 84.86660 * 8 6 4 10 10 H 1.48503 * 109.47202 * 204.86509 * 8 6 4 11 11 H 1.48504 * 109.47326 * 324.86672 * 8 6 4 12 12 N 1.46907 * 109.47459 * 119.99919 * 2 1 3 13 13 C 1.46895 * 110.99682 * 58.95080 * 12 2 1 14 14 C 1.46906 * 110.99690 * 295.00233 * 12 2 1 15 15 C 1.50700 * 109.46861 * 189.99743 * 14 12 2 16 16 C 1.35351 * 126.75046 * 95.00331 * 15 14 12 17 17 N 1.35310 * 106.17354 * 180.02562 * 16 15 14 18 18 C 1.46501 * 125.86679 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47209 * 124.98332 * 18 17 16 20 20 N 1.34779 * 120.00251 * 180.02562 * 19 18 17 21 21 O 1.21280 * 119.99678 * 359.97438 * 19 18 17 22 22 N 1.28706 * 108.26509 * 359.97438 * 17 16 15 23 23 N 1.28631 * 110.17914 * 359.97438 * 22 17 16 24 24 H 1.08994 * 109.47340 * 55.19300 * 1 2 3 25 25 H 1.09001 * 109.46633 * 175.18681 * 1 2 3 26 26 H 1.09001 * 109.47227 * 295.18580 * 1 2 3 27 27 H 0.97005 * 119.99482 * 180.02562 * 7 6 4 28 28 H 1.08991 * 109.47722 * 296.04877 * 13 12 2 29 29 H 1.09003 * 109.46939 * 56.05710 * 13 12 2 30 30 H 1.09002 * 109.46803 * 176.04848 * 13 12 2 31 31 H 1.09004 * 109.47007 * 69.99458 * 14 12 2 32 32 H 1.08996 * 109.47011 * 309.99923 * 14 12 2 33 33 H 1.08006 * 126.91257 * 359.97438 * 16 15 14 34 34 H 1.09000 * 109.47594 * 244.98194 * 18 17 16 35 35 H 1.09009 * 109.47244 * 4.98334 * 18 17 16 36 36 H 0.97001 * 119.99589 * 359.97438 * 20 19 18 37 37 H 0.96997 * 119.99542 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.3341 -1.1919 -1.8989 6 6 3.3836 -0.7457 -1.5027 7 7 3.8219 -1.3661 -2.5763 8 14 4.5914 0.0877 -0.3469 9 1 4.9328 -0.8375 0.7634 10 1 5.8255 0.4428 -1.0925 11 1 3.9760 1.3203 0.2075 12 7 2.0198 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6488 0.0392 2.4181 15 6 2.3680 -0.5571 3.6006 16 6 3.5371 -0.1336 4.1351 17 7 3.7988 -0.9614 5.1730 18 6 4.9657 -0.8887 6.0558 19 6 4.5069 -0.7978 7.4884 20 7 5.4134 -0.7201 8.4827 21 8 3.3219 -0.7935 7.7464 22 7 2.8458 -1.8228 5.2520 23 7 1.9761 -1.6084 4.3289 24 1 -0.3634 0.5866 -0.8437 25 1 -0.3632 -1.0241 -0.0862 26 1 -0.3634 0.4373 0.9300 27 1 4.7726 -1.3913 -2.7677 28 1 0.4421 -2.0731 1.3348 29 1 1.8169 -2.5950 0.3319 30 1 1.9618 -2.5868 2.1059 31 1 0.5722 -0.0345 2.5726 32 1 1.9297 1.0870 2.3125 33 1 4.1403 0.6974 3.8001 34 1 5.5759 -1.7825 5.9258 35 1 5.5556 -0.0066 5.8065 36 1 6.3612 -0.7231 8.2762 37 1 5.1180 -0.6619 9.4048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474340209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:34 Heat of formation + Delta-G solvation = 47.242105 kcal Electronic energy + Delta-G solvation = -20619.305399 eV Core-core repulsion = 17433.402699 eV Total energy + Delta-G solvation = -3185.902701 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.21022 -40.54756 -39.05796 -35.63655 -34.82493 -34.46591 -32.88086 -30.98028 -29.59110 -28.26012 -27.37258 -25.25570 -23.68239 -22.50054 -21.50281 -20.75708 -18.93545 -18.74868 -18.41968 -17.35786 -17.06728 -16.68378 -16.25626 -16.01214 -15.89433 -15.43544 -15.04780 -14.74600 -14.64694 -14.20262 -13.89355 -13.47978 -13.08065 -12.78685 -12.69693 -12.59197 -12.38212 -12.09395 -11.79065 -11.73453 -11.56216 -11.54532 -11.09871 -10.86036 -10.76403 -10.66918 -10.11774 -8.88613 -8.16765 -6.27331 0.64717 1.32741 1.42168 1.50482 1.55336 1.64238 1.72039 2.39614 2.59423 3.09337 3.38529 3.66928 3.75600 3.84393 4.00961 4.04437 4.21223 4.50160 4.51934 4.60432 4.69395 4.77539 4.82231 4.86743 5.01823 5.16999 5.23124 5.37206 5.50398 5.60446 5.70647 5.80287 6.12972 6.32931 6.50971 6.61757 6.87607 7.21186 7.47090 7.56717 8.96891 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027719 B = 0.005196 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.876786 B = 5387.279726 C = 5998.301325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.174 3.826 3 H 0.055 0.945 4 C -0.510 4.510 5 H 0.026 0.974 6 C 0.022 3.978 7 N -0.954 5.954 8 Si 0.983 3.017 9 H -0.271 1.271 10 H -0.318 1.318 11 H -0.241 1.241 12 N -0.541 5.541 13 C 0.057 3.943 14 C 0.132 3.868 15 C -0.026 4.026 16 C -0.028 4.028 17 N -0.283 5.283 18 C 0.086 3.914 19 C 0.504 3.496 20 N -0.823 5.823 21 O -0.579 6.579 22 N -0.098 5.098 23 N -0.301 5.301 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.021 0.979 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.230 0.770 34 H 0.158 0.842 35 H 0.187 0.813 36 H 0.425 0.575 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 6.647 22.267 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.549 4.549 5 H 0.045 0.955 6 C -0.176 4.176 7 N -0.594 5.594 8 Si 0.810 3.190 9 H -0.196 1.196 10 H -0.248 1.248 11 H -0.164 1.164 12 N -0.267 5.267 13 C -0.091 4.091 14 C 0.003 3.997 15 C -0.164 4.164 16 C -0.179 4.179 17 N -0.077 5.077 18 C -0.038 4.038 19 C 0.287 3.713 20 N -0.389 5.389 21 O -0.457 6.457 22 N -0.077 5.077 23 N -0.168 5.168 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.246 0.754 34 H 0.175 0.825 35 H 0.204 0.796 36 H 0.258 0.742 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 8.768 5.358 22.932 25.128 hybrid contribution 0.338 0.585 -0.284 0.733 sum 9.105 5.942 22.648 25.122 Atomic orbital electron populations 1.22190 0.97996 1.00593 1.00926 1.19740 0.91549 0.94845 0.87020 0.92745 1.21119 0.92478 1.35075 1.06203 0.95522 1.25958 1.00786 0.94906 0.95987 1.70118 1.15038 1.45375 1.28849 0.85115 0.75585 0.80270 0.77984 1.19631 1.24765 1.16438 1.62435 1.59835 1.02632 1.01751 1.21873 0.96701 0.90513 1.00047 1.20378 0.96619 0.97680 0.85049 1.22139 0.97043 0.96918 1.00282 1.23876 1.00150 1.01504 0.92362 1.47012 1.18196 1.20454 1.22073 1.22419 0.84292 1.11489 0.85554 1.20653 0.86198 0.75766 0.88669 1.43499 1.10638 1.75623 1.09169 1.90890 1.19263 1.50677 1.84899 1.78220 0.95940 1.14979 1.18532 1.74998 1.21723 1.16443 1.03674 0.92796 0.94459 0.92172 0.92934 0.96008 0.93648 0.93357 0.93427 0.87574 0.75357 0.82456 0.79555 0.74220 0.75502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.25 8.40 71.98 0.60 -5.64 16 2 C 0.17 7.84 1.70 44.17 0.08 7.91 16 3 H 0.05 2.37 6.80 -2.39 -0.02 2.36 16 4 C -0.51 -28.80 7.76 25.60 0.20 -28.60 16 5 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 6 C 0.02 1.25 5.47 84.66 0.46 1.72 16 7 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 8 Si 0.98 45.65 26.26 68.60 1.80 47.45 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.32 -14.90 7.11 99.48 0.71 -14.19 16 11 H -0.24 -9.85 6.52 99.48 0.65 -9.21 16 12 N -0.54 -22.83 2.78 -906.03 -2.52 -25.35 16 13 C 0.06 2.53 8.61 127.69 1.10 3.63 16 14 C 0.13 4.56 4.97 85.56 0.43 4.99 16 15 C -0.03 -0.89 5.96 41.60 0.25 -0.64 16 16 C -0.03 -0.74 11.50 83.49 0.96 0.22 16 17 N -0.28 -7.26 3.20 -351.45 -1.12 -8.38 16 18 C 0.09 0.97 6.94 85.63 0.59 1.56 16 19 C 0.50 7.89 8.11 87.66 0.71 8.60 16 20 N -0.82 -3.91 8.87 -173.53 -1.54 -5.45 16 21 O -0.58 -17.25 16.51 -3.03 -0.05 -17.30 16 22 N -0.10 -3.49 12.13 37.02 0.45 -3.04 16 23 N -0.30 -11.84 11.44 -48.60 -0.56 -12.40 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.04 1.54 6.75 -2.39 -0.02 1.52 16 26 H 0.06 2.02 6.53 -2.39 -0.02 2.00 16 27 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 28 H 0.02 0.91 6.62 -2.39 -0.02 0.90 16 29 H 0.04 2.28 6.99 -2.39 -0.02 2.26 16 30 H 0.05 2.12 6.55 -2.39 -0.02 2.11 16 31 H 0.05 1.65 6.83 -2.39 -0.02 1.63 16 32 H 0.11 3.10 8.00 -2.39 -0.02 3.08 16 33 H 0.23 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.19 0.12 8.07 -2.38 -0.02 0.10 16 36 H 0.43 -1.63 8.83 -92.71 -0.82 -2.45 16 37 H 0.41 1.90 8.93 -92.71 -0.83 1.07 16 Total: -1.00 -89.28 306.83 1.55 -87.73 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -0.59 Total: 2.65 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.38 Total: -6.24 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.99 Total: -114.29 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.05 Total: -17.30 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.80 Total: 47.45 kcal Total: -89.28 1.55 -87.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474340209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.977 kcal (2) G-P(sol) polarization free energy of solvation -89.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds